cluster # 8660

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Schistosoma mansoni
cluster # 8660 cluster # 8660 Sequences # 7 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8660#0 length = 347 sequences # 5

consensus_8660#1 length = 92 sequences # 1
consensus_8660#2 length = 77 sequences # 1

consensusID : consensus_8660#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 347
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTATTTAGTATAGAATAATTTTCTAAAATGTATATTATACTAACGAATTTATTTCTGCGGCAGTTCGTTAGATACTAATTTGTTCTAAAATAGTTTTACACTTCTCATTTAAGCACACTGAATATTGTCTTGGCAACCTGATGATCTACGCACCCTAGTAAATCTACTAATTCTTCTTCACAACTTTCCTTTGTTCTGCTTTGTCTGTCTCCACATTCTTCTAGTTTTTTGAGAAAAGGACTGCAGTGGTGAGAAACTCTGGCTTCTTTGCGAAGCGTATCCAAAGGATCAACAGCCTCTTCGTCAGACATCGTTTCGCGCGCCCCACTT]

[+] EMBL AI395212             [TTTTTTTTTTTTTTTTTTTATTTAGTATAGAATAATTTTCTAAAATGTATATTATACTAACGAATTTATTTCTGCGGCAGTTCGTTAGATACTAATTTGTTCTAAAATAGTTTTACACTTCTCATTTAAGCACACTGAATATTGTCTTGGCAACCTGATGATCTACGCACCCTAGTAAATCTACTAATTCTTCTTCACAACTTTCCTTTGTTCTGCTTTGTCTGTCTCCACATTCTTCTAGTTTTTTGAGAAAAGGACTGCAGTGGTGAGAAACTCTGGCTTCTTTGCGAAGCGTATCCAAAGGATC                                        ]
[+] EMBL AI395458             [    TTTTTTTTTTTTTTTAATTAGTATAGAATAATTTTCTAAAATGTATATTATACTAACGAATTTATTTCTGCGGCAATTCGTTAGATACTAATTTGTTCTAAAATAGTTTTACACTTCTCATTTAAGCACACTGAATATTGTCTTGGCAACCTGATGATCTACGCACCCTAGTAAATCTACTAATTCTTCTTCACAACTTTCCTTTGTTCTGCTTTGTCTGTCTCCACATTCTTCTAGTTTTTTGAGAAAAGGACTGCAGTGGTGAGAAACTCTGGCTTCTTTGCGAAGCGTATCCAAAGGATCAACAGCCTCTTCGTCAGACATCGTTTCGCGCGCCCCACTT]
[+] EMBL AA999282             [                                                         TAACGAATTTATTTCTGCGGCAGTTCGTTAGATACTAATTTGTTCTAAAATAGTTTTACACTTCTCATTTAAGCNCACTGAATATTGTCTTGGCAACCTGATGATCTACGCACCCTAGTAAATCTACTAATTCTTCTTCACAACTTTCCTTTGTTCTGCTTTGTCTGTCTCCACATTCTTCTAGTTTTTTGAGAAAAGGNCTGCAGTGGTGAGAAACTCTGGCTTCTTTGCG                                                          ]
[+] EMBL CD095279             [                                                                                     TAGATACTAATTTGTTCTAAAATAGTTTTACACTTCTCATTTAAGCACACTGAATATTGTCTTGGCAACCTGATGATCTACGCACCCTAGTAAATCTACTAATTCTTCTTCACAACTTTCCTTTGTTCTGCTTTGTCTGTCTCCACATTCTTCTAGTTTTTTGAGAAAAGGACTGCAGTGGTGAGAAACTCTGGCTTCTTTGCGAAGCGTATCCAAAGGATCAACAGCCTCTTCGTCAGA                      ]
[+] EMBL CD086646             [                                                                                                                                                            GATGATCTACGCACCCTAGTAAATCTACTAATTCTTCTTCACAACTTTCCTTTGTTCTGCTTTGTCTGTCTCCACATTCTTCTAGTTTTTTGAAAAAAGGACTGCAGTGGTGAAAAACTCTGGCTTCTTTGCAAAGCCTATCCAAAGGGTCAA                                      ]




>consensus_8660#0
TTTTTTTTTTTTTTTTTTTATTTAGTATAGAATAATTTTCTAAAATGTATATTATACTAA
CGAATTTATTTCTGCGGCAGTTCGTTAGATACTAATTTGTTCTAAAATAGTTTTACACTT
CTCATTTAAGCACACTGAATATTGTCTTGGCAACCTGATGATCTACGCACCCTAGTAAAT
CTACTAATTCTTCTTCACAACTTTCCTTTGTTCTGCTTTGTCTGTCTCCACATTCTTCTA
GTTTTTTGAGAAAAGGACTGCAGTGGTGAGAAACTCTGGCTTCTTTGCGAAGCGTATCCA
AAGGATCAACAGCCTCTTCGTCAGACATCGTTTCGCGCGCCCCACTT

consensusID : consensus_8660#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 92
fasta sequence

                              [TGCACTGACCGGAAACCTGATGATCTACGCACCCTAGTAAATCTACTAATTCTTCTTCACAACTTTCCTTTGATCTGCTTTGGCTGTCTACA]

[+] EMBL CD086554             [TGCACTGACCGGAAACCTGATGATCTACGCACCCTAGTAAATCTACTAATTCTTCTTCACAACTTTCCTTTGATCTGCTTTGGCTGTCTACA]




>consensus_8660#1
TGCACTGACCGGAAACCTGATGATCTACGCACCCTAGTAAATCTACTAATTCTTCTTCAC
AACTTTCCTTTGATCTGCTTTGGCTGTCTACA

consensusID : consensus_8660#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 77
fasta sequence

                              [TCTGACGAAGAGGCTGTTTGATCCTTTGGATACGCTTCGCAAAGAAGCCAGAGTTTCTCACACTGCTGTCTTTCCAA]

[+] EMBL AA864165             [TCTGACGAAGAGGCTGTTTGATCCTTTGGATACGCTTCGCAAAGAAGCCAGAGTTTCTCACACTGCTGTCTTTCCAA]




>consensus_8660#2
TCTGACGAAGAGGCTGTTTGATCCTTTGGATACGCTTCGCAAAGAAGCCAGAGTTTCTCA
CACTGCTGTCTTTCCAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8660#0      TTTTTTTTTTTTTTTTTTTATTTAGTATAGAATAATTTTCTAAAATGTATATTATACTAA 60
consensus_8660#1      ------------------------------------------------------------
consensus_8660#2      ------------------------------------------------------------
                                                                                  

consensus_8660#0      CGAATTTATTTCTGCGGCAGTTCGTTAGATACTAATTTGTTCTAAAATAGTTTTACACTT 120
consensus_8660#1      ------------------------------------------------------------
consensus_8660#2      ------------------------------------------------------------
                                                                                  

consensus_8660#0      CTCATTTAAGCACACTGAATATTGTCTTGGCAACCTGATGATCTACGCAC-CCTAGTAAA 179
consensus_8660#1      -----------------TGCACTGACC-GGAAACCTGATGATCTACGCAC-CCTAGTAAA 41
consensus_8660#2      -----------------TCTGACGAAGAGGCTGTTTGATCCTTTGGATACGCTTCGCAAA 43
                                             *    **     ****  * *    ** * * * ***

consensus_8660#0      TCTACTAATTCTTCTT-CACAACTTTCCTTTGTTCTGCTTTGTCTGTCTCCACATTCTTC 238
consensus_8660#1      TCTACTAATTCTTCTT-CACAACTTTCCTTTGATCTGCTTTGGCTGTCTACA-------- 92
consensus_8660#2      GAAGCCAGAGTTTCTCACACTGCTGTCTTTCCAA-------------------------- 77
                          * *    ****  ***  ** ** **                              

consensus_8660#0      TAGTTTTTTGAGAAAAGGACTGCAGTGGTGAGAAACTCTGGCTTCTTTGCGAAGCGTATC 298
consensus_8660#1      ------------------------------------------------------------
consensus_8660#2      ------------------------------------------------------------
                                                                                  

consensus_8660#0      CAAAGGATCAACAGCCTCTTCGTCAGACATCGTTTCGCGCGCCCCACTT 347
consensus_8660#1      -------------------------------------------------
consensus_8660#2      -------------------------------------------------