These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8662#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 510 fasta sequence [ATGTGTGCGACCAAGTGGCCGTTTACAATTTAGATTGCTATTTATACCTGACGTATAGGGAACATGTTCT-AAACTCTTATTTCCAAGGTTTGTGGTTGATTTTGGCTCCTTCGTAATTTGAGGAGGGTCGTGTGTTGTTAAAGATGCTTGAGATGGTTTGCTAGGTTCGAGTATATCGACGTTAAGAGTGTGGTCAGGCAGATAAATTTTATGACCAGTTTTCCAGTTATCCGTTGCACAGTCACTATAACTGGTTTTTGCACTAACAGCGACTTGGACTGTGTTATCCCATTCGAAATCAGTACAACTACTTAGGGTTGAATCTAAGTCAACATTCTTAAAAGGATGGGCATCACCTACATTGGGACTACTTTCTTTTGGGCTTTGAACATTAGGAGATTCAGGAGAGTTTTCCGGTGGTTGCATATTCGTAAAGTTAGATGTCCGCTTAGGATCGGACTTAATTTTATGACCTTTAGGATTATGATACGCTTGGGTGCTTGATGCTGG] [+] EMBL CD160041 [ATGTGTGCGACCAAGTGGCCGTTTACAATTTAGATTGCTATTTATACCTGACGTATAGGGAACATGTTCT AAACTCTTATTTCCAAGGTTTGTGGTTGATTTTGGCTCCTTCGTAATTTGAGGGGGGTCGTGTGTTGTTAAAGATGCTTGAGATGGTTTGCTAGGTTCGAGTATATCGACGTTAAGAGTGTGGTCAGGCAGATAAATTTTATGACCAGTTTTCCAGTTATCCGTTGCACAGTCACTATAACTGGTTTTTGCACTAACAGCGACTTGGACTGTGTTATCCCATTCGAAATCAGTACAACTACTTAGGGTTGAATCTAAGTCAACATTCTTAAAAGGATGGGCATCACCTACATTGGGACTACTTTCTTTTGGGCTTTGAACATTAGGAGACTCAGGAGAGTTTTCCGGTGGTTGCATATTCGTAAAGTTAGATGTCCGCTTg ] [+] EMBL CD177760 [ATGTGTGCGAACAAGTGGCCGTTTACAATTTAGACTGCTATTTATACCTGACGTATAGGGAACATGTTCTAAAACGCTTATTTCCAAAGTTTGTGGTTGATTTTGGCTCCTTCGTAATTTGAGGAGGGTCGTGTGTTGTTAAAGAAGCTTGAGATGGTTTGCTAGGTTCGAGTATATCGACGTTAAGcg ] [-] EMBL CD191456 [ TGGCTCCTTCGTAATTTGAGGAGGGTCGTGTGTTGTTAAAGATGCTTGAGATGGTTTGCTAGGTTCGAGTATATCGACGTTAAGCGTGTGGTCAGGCAGATAATTTTTATGACCAGTTTTCCCGTTATCCGTTGCACAGTCACTGTAACTGGTTGTTGCACTAACAGCGACTTGGACTGTGTTATCCCATTCGAAATCAATACAACTACTTAGGGTTGAATCTAAGTCAACATTCTTAAAAGGAAGGGCATCACCTACATTGGGACTACTTTCTTTTGGGCTTTGAACTTTAGGAGATTCAGGAGAGTTTTTCGGTGGTTGCATATTCGTAAAGTTAGATGTCCGCTTAGGATCGGACTTAATTTTATGACCTTTAGGATTATGATACGCTTGGGTGCTTGATGC ] [+] EMBL CD180267 [ CGTTAAGAGTGTGGTCAGGCAGATAAATTTTATGACCAGTTCTCCAGTTATCCGTTGCACAGTCACTATAACTGGTTTTTGCACTAACAGCGACTTGGACTGTGTTATCCCATTCGAAATCAGTACAACTACTTAGGGTTGAATCTAAGTCAACATTCTTAAAAGGATGGGCATCACCTACATTGGGACTACTTTCTTTTGGGCTTTGAACATTAGGAGATTCAGGAGAGTTTTCCGGTGGTTGCATATTCGTAAAGTTAGATGTCCGCTTAAGATCGGACTTAATTTAATGACCTTTAGGATTATGATACGCTTGGGTGTTTGATGCTGG] consensusID : consensus_8662#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 365 fasta sequence [CAATTGGCCGTTTACAATTTAAATTGCTATTTATACCTGACGTATAGGGAACATGTTCTAAACGCTTATTACCAAGGGTTGTGGTTGATTTTGGCTCCTTCGTAATTTGAGGAGGGTCGTGTGTTGTTAAAGATGCTTGAGATGGTTAGCAAGGTTCAAGTTTATTGACGTTAAGCGTGTGGTCAGGCAGATAATTTTTATGACCAGTTTCCCCGTTATCCGTTGCACAGTCACTGTAACTGGTTGTTACACTAACAGCGATTTAGACTGTGTCATCACATTCGTAATCAGTACAACTACTTGGAGTTGAATCTAAGTGAACATTCTTAAAAGGATGGGCATCACCTAACATTGAGACTACTTTC] [+] EMBL CD061092 [CAATTGGCCGTTTACAATTTAAATTGCTATTTATACCTGACGTATAGGGAACATGTTCTAAACGCTTATTACCAAGGGTTGTGGTTGATTTTGGCTCCTTCGTAATTTGAGGAGGGTCGTGTGTTGTTAAAGATGCTTGAGATGGTTAGCAAGGTTCAAGTTTATTGACGTTAAGCGTGTGGTCAGGCAGATAATTTTTATGACCAGTTTCCCCGTTATCCGTTGCACAGTCACTGTAACTGGTTGTTACACTAACAGCGATTTAGACTGTGTCATCACATTCGTAATCAGTACAACTACTTGGAGTTGAATCTAAGTGAACATTCTTAAAAGGATGGGCATCACCTAACATTGAGACTACTTTC] [+] EMBL CD195772 [ TTGATTTTGGCTCCTTCGTAATTTGAGGAGGGTCGTGTGTTGTTAAAGATGCTTGAGATGGTTAGCAAGGTTCGAGTTTATCGACGTTAAGCGTGTGGTCAGGCAGATAATTTTTATGACCAGTTTCCCCGTTATCCGTTGCACAGTCACTGT ] consensusID : consensus_8662#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 275 fasta sequence [AATATGCAACCACCGAAAAACTCTCCTGAATCTCCTAAAGTTCAAAACCCAAAAGAAAGTAGTCCCAATGTAGGTGATATGCATGCTTATTACGTTAGAGTCCTGTGATAACGGTAGTTTACACGTGAAGCTCGTGTGACAATTGAGGTTTGAAACCGTGAGGTACTGGCAGATCTGCGGAGAACATATTTACAATACACTGTTGTATTTTATTGGAATTTAAAATCTGAGCATGCTTAATAAAATACAGCGTTTAAAAATTAACGCTTGCAAAT] [+] EMBL CD078032 [AATATGCAACCACCGAAAAACTCTCCTGAATCTCCTAAAGTTCAAAACCCAAAAGAAAGTAGTCCCAATGTAGGTGATATGCATGCTTATTACGTTAGAGTCCTGTGATAACGGTAGTTTACACGTGAAGCTCGTGTGACAATTGAGGTTTGAAACCGTGAGGTACTGGCAGATCTGCGGAGAACATATTTACAATACACTGTTGTATTTTATTGGAATTTAAAATCTGAGCATGCTTAATAAAATACAGCGTTTAAAAATTAACGCTTGCAAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8662#0 ATGTGTGCGACCAAGTGGCCGTTTACAATTTAGATTGCTATTTATACCTGACGTATAGGG 60 consensus_8662#1 -----------CAATTGGCCGTTTACAATTTAAATTGCTATTTATACCTGACGTATAGGG 49 consensus_8662#2 ------------------------------------------------------------ consensus_8662#0 AACATGTTCTAAACTCTTATTTCCAAGGTTTGTGGTTGATTTTGGCTCCTTCGTAATTTG 120 consensus_8662#1 AACATGTTCTAAACGCTTATTACCAAGGGTTGTGGTTGATTTTGGCTCCTTCGTAATTTG 109 consensus_8662#2 --------------------------AATATGCAACCACCGAAAAACTCTCCTGAATCTC 34 ** ** * *** * consensus_8662#0 AGGAGGGTCGTGTGTTGTTAAAGATGCTTGAGATGGTTTGCTAGGTTCGAGTATATCGAC 180 consensus_8662#1 AGGAGGGTCGTGTGTTGTTAAAGATGCTTGAGATGGTTAGCAAGGTTCAAGTTTATTGAC 169 consensus_8662#2 CTAAAGTTCAAAACCCAAAAGAAAGTAGTCCCAATGTAGGTGATATGCATGCTTATT-AC 93 * * ** * * * * * ** * * * * * *** ** consensus_8662#0 GTTAAGAGTGTGGTCAGGCAGATAAATTTTATGACCAGTTTTCCAGTTATCCGTTGCACA 240 consensus_8662#1 GTTAAGCGTGTGGTCAGGCAGATAATTTTTATGACCAGTTTCCCCGTTATCCGTTGCACA 229 consensus_8662#2 GTTA-GAGTCCTGTGATAACGGTAGTTTACACGTGAAGCTCGTGTGACAATTGAGGT--- 149 **** * ** ** * * ** ** * * ** * * * * * consensus_8662#0 GTCACTATAACTGGTTTTTGCACTAACAGCGACTTGGACTGTGTTATCCCATTCGAAATC 300 consensus_8662#1 GTCACTGTAACTGGTTGTTACACTAACAGCGATTTAGACTGTGTCATCACATTCGTAATC 289 consensus_8662#2 ----TTGAAACCG--TGAGGTACTGGCAGATCTGCGGAGAACATATTTACAAT--ACACT 201 * *** * * *** *** ** * * ** * * consensus_8662#0 AGTACAACTACTTAGGGTTGAATCTAAGTCAACATTCTTAAAAGGATGGGCATCACCTA- 359 consensus_8662#1 AGTACAACTACTTGGAGTTGAATCTAAGTGAACATTCTTAAAAGGATGGGCATCACCTAA 349 consensus_8662#2 GTTGTATTTTATTGGAATTTAAAAT--CTGAGCATGCTTAATAAAAT--ACAGCGTTTAA 257 * * * ** * ** ** * * * *** ***** * ** ** * ** consensus_8662#0 CATTGGGACTACTTTCTTTTGGGCTTTGAACATTAGGAGATTCAGGAGAGTTTTCCGGTG 419 consensus_8662#1 CATTGAGACTACTTTC-------------------------------------------- 365 consensus_8662#2 AAATTAA--CGCTTGCAAAT---------------------------------------- 275 * * *** * consensus_8662#0 GTTGCATATTCGTAAAGTTAGATGTCCGCTTAGGATCGGACTTAATTTTATGACCTTTAG 479 consensus_8662#1 ------------------------------------------------------------ consensus_8662#2 ------------------------------------------------------------ consensus_8662#0 GATTATGATACGCTTGGGTGCTTGATGCTGG 510 consensus_8662#1 ------------------------------- consensus_8662#2 ------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||