cluster # 8669

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Schistosoma mansoni
cluster # 8669 cluster # 8669 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8669#0 length = 636 sequences # 5

consensus_8669#1 length = 632 sequences # 2

consensusID : consensus_8669#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 636
fasta sequence

                              [ACCATTTGGAGTATATGCCAGATATTATTTCGACTTGTTAACCGTTGGGGAGAGTGCTGGAGTTGCAAATCAAGCTGTTAAACGCAAACGCTTAACTCCTGAAAGAGCACGCAACTTCCGAATTTTACCTACTAATTTGGAAATATGTACATCGGACAAAACATTATTAAATAGAGGATTTCTTTTTGACTTACCCTCTTTCACAAAATCAGAAGTATTGTGCAATAAAAAAGAAAGACAAAAGCATATTATTCAGGAATCAACGGAAGTTAAGTGTTACAAAGACGGTAATCATCAAAAAATGTTCATTAAAACTCCTTTTTTAAGTCGAAATCAGGCAACTAACCATCAAATTAACTTGTCTAACCCAAAGTTTGATCTTATGCCTGATCATGTAACAGTTCCTGTTGATATGAATTATCAGTCTTCCAATAATGTAATTTCCGATGAATCGTTGGTCCCAATCCACCTGGATGAAGAAACTGATTTTGTAAATTCTACTCCCCCGACTTTTCCAAAATTAAAAGAATTTACTTATCAGTCGAAACAGTCAAAGACAAAGTACTCTTTCAAAAATCAAGAGCCTTCTAACCAATTTCATCCCTTATTATTATCATCATTGAATTACCAAAAAGA]

[+] EMBL AI977101             [ACCATTTGGAGTATATGCCAGATATTATTTCGACTTGTTAACCGTTGGGGAGAGTGCTGGAGTTGCAAATCAAGCTGTTAAACGCAAACGCTTAACTCCTGAAAGAGCACGCAACTTCCGAATTTTACCTACTAATTTGGAAATATGTACATCGGACAAAACATTATTAAATAGAGGATTTCTTTTTGACTTACCCTCTTTCACAAAATCAGAAGTATTGTGCAATAAAAAAGAAAGACAAAAGCATATTATTCAGGAATCAACGGAAGTTAAGTGTTACAAAGACGGTAATCATCAAAAAATGTTCATTAAAACTCCTTTTTTAAGTCGAAATCAGGCAACTAACCATCAAATTAACTTGTCTAACCCAAAGTTTGATCTTATGCCTGATCATGTAACAGTTCCTGTTGATATGAATTATCAGTCTTCCAATAATGTAATTTCCGATGAATCGTTGGTCCCAATCCACCTGGATGAAGAAACTGATTNTGTAAATTCTACTCCCCCGACTTTTCCAAAATTAAAAGAATTTACTTATCAGTCGAAACAGTCAAAGACAAA                                                                           ]
[+] EMBL CD190582             [                                                                   AATCAAGCTGTTAAACGCAAACGCTTAACTCCTGAAAGAGCACGCAACTTCCGAATTTTACCTACTAATTTGGAAATATGTACATCGGACAAAACATTATTAAATAGAGGATTTCTTTTTGACTTACCCTCTTTCACAAAATCAGAAGTATTGTGCAATAAAAAAGAAAGACAAAAGCATATTATTCAGGAATCAACGGAAGTTAAGTGTTACAAAGACGGTAATCATCAAAAAATGTTCATTAAAACTCCTTTTTTAAGTCGAAATCAGGCAACTAACCATCAAATTAACTTGTCTAACCCAAAGTTTGATCTTATGCCTGATCATGTAACAGTTCCTGTTGATATGAATTATCAGTCTTCCAATAATGTAATTTCCGATGAATCGTTGGTCCCAATCCACCTGGATGAAGAAACTGATTTTGTAAATTCTACTCCCCCGACTTTTCCAAAATTAAAAGAAATTACTTATCAGTCGAAACAGTCAAAGACAAAGTACTCT                                                                    ]
[-] EMBL CD166322             [                                                                                                                                                                                         TTGACTTACCCTCTTTCACAAAATCAGAAGTATTGTGCAATAAAAAAGAAAGACAAAGGCATATTATTCAGGAATCAACGGAAGTTAAGTGTTACAAAGACGGTAATCATCAAAAAATGTTCATTAAAACTCCTTTTTTAAGTCGAAATCAGGCAACTAACCATCAAATTAACTTGTTTAACCCAAAGTTTGATCTTATGCCTGATCATGTAACAGTTCCTGTTGATATGAATTATCAGTCTTCCAATAATGTAATTTCCGATGAATCGTTGGTCCCAATCCACCTGGATGAAGAAACTGATTTTGTAAATTCTACTCCCCCGACTTTTCCAAAATTAAAAGAATTTACTTATCAGTCGAAACAGTCAAAGACAAAGTACTCTTTCAAAAATCAAGAGCCTTCTAACCAATTTCATCCCTTATTATTATCATCATTGAATTACCAAAAAGA]
[+] EMBL CD170648             [                                                                                                                                                                                         TTGACTTACCCTCTTTCACAAAATCAGAAGTATTGTGCAATAAAAAAGAAAGACAAAAGCATATTATTCAGGAATCAACGGAAGTTAAGTGTTACAAAGACGGTAATCATCAAAAAATGTTCATTAAAACTCCTTTTTTAAGTCGAAATCAGGCAACTAACCATCAAATTAACTTGTCTAACCCAAAGTTTGATCTTATGCCTGATCATGTAACAGTTCCTGTTGATATGAATTATCAGTCTTCCAATAATGTAATTTCCGATGAATCGTTGGTCCCAATCCACCTGGATGAAGAAACTGATTTTGTAAATTCTACTCCCCCGACTTTTCCAAAATTAAAAGAATTTACTTATCAGTCGAAACAGTCAAAGACAAAGTACTCTTTCAAAAATCAAGAGCCTTCTAACCAATTTCATCCCTTATTATTATCATC                  ]
[+] EMBL CD170514             [                                                                                                                                                                                         TTGACTTACCCTCTTTCACAAAATCAGAAGTATTGTGCAATAAAAAAGAAAGACAAAAGCATATTATTCAGGAATCAACGGAAGTTAAGTGTTACAAAGACGGTAATCATCAAAAAATGTTCATTAAAACTCCTTTTTTAAGTCGAAATCAGGCAACTAACCATCAAATTAACTTGTCTAACCCAAAGTTTGATCTTATGCCTGATCATGTAACAGTTCCTGTTGATATGAATTATCAGTCTTCCAATAATGTAATTTCCGATGAATCGTTGGTCCCAATCCACCTGGATGAAGAAACTGATTTTGTAAATTCTACTCCCCCGACTTTTCCAAAATTAAAAGAATTTACTTATCAGTCGAAACAGTCAAAGACAAAGTACTCTTTCAAAAATCAAGAGCCTTCTAACCAATTTCATCCCTTATTATTATCATC                  ]




>consensus_8669#0
ACCATTTGGAGTATATGCCAGATATTATTTCGACTTGTTAACCGTTGGGGAGAGTGCTGG
AGTTGCAAATCAAGCTGTTAAACGCAAACGCTTAACTCCTGAAAGAGCACGCAACTTCCG
AATTTTACCTACTAATTTGGAAATATGTACATCGGACAAAACATTATTAAATAGAGGATT
TCTTTTTGACTTACCCTCTTTCACAAAATCAGAAGTATTGTGCAATAAAAAAGAAAGACA
AAAGCATATTATTCAGGAATCAACGGAAGTTAAGTGTTACAAAGACGGTAATCATCAAAA
AATGTTCATTAAAACTCCTTTTTTAAGTCGAAATCAGGCAACTAACCATCAAATTAACTT
GTCTAACCCAAAGTTTGATCTTATGCCTGATCATGTAACAGTTCCTGTTGATATGAATTA
TCAGTCTTCCAATAATGTAATTTCCGATGAATCGTTGGTCCCAATCCACCTGGATGAAGA
AACTGATTTTGTAAATTCTACTCCCCCGACTTTTCCAAAATTAAAAGAATTTACTTATCA
GTCGAAACAGTCAAAGACAAAGTACTCTTTCAAAAATCAAGAGCCTTCTAACCAATTTCA
TCCCTTATTATTATCATCATTGAATTACCAAAAAGA

consensusID : consensus_8669#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 632
fasta sequence

                              [GAATTCGGCACGAGGTTAAAACTCCTTTTTTAAGGTCGAAATCAGGCAACTAACCATCAAATTAACTTGTCTAACCCAAAGTTTGATCTTATGCCTGATCATGTAACAGTTCCTGTTGATATGAATTATCAGTCTTCCAATAATGTAATTTCCGATGAATCGTTGGTCCCAATCCACCTGGATGAAGAAACTGATTTTGTAAATTCTACTCCCCCGACTTTTCCAAAATTAAAAGAATTTACTTATCAGTCGAAACAGTCAAAGACAAAGTACTCTTTCAAAAATCAAGAGCCTTCTAACCAATTTCATCCCTTATTATTATCATCATTGAATTACCAAAAAGAGACAGTTCCTTGCACGAAGTTTTTGATCAACTCCTCCTGTAAGCCTATTCAAACGTCAGCTTGTGTTCGGAATTTTAACCCACCTTGTTCCTTAAATGAAGCACCAGGTGTAGATCCCAATAACGTAACTGATTCTCGTATGAGAACAGAGTTTATACGATCTCTTATGGGTGGTGATGTAGCTTATTCCTTATTACGTGATTCTGGATTATACTGATTAGCTAAGGTCTAATATATTTGCTTTTAATATTATTTGCGCTATTGGTATTAACGCTTATAGTGAGGGAT]

[+] EMBL CD081832             [GAATTCGGCACGAGGTTAAAACTCCTTTTTTAAGGTCGAAATCAGGCAACTAACCATCAAATTAACTTGTCTAACCCAAAGTTTGATCTTATGCCTGATCATGTAACAGTTCCTGTTGATATGAATTATCAGTCTTCCAATAATGTAATTTCCGATGAATCGTTGGTCCCAATCCACCTGGATGAAGAAACTGATTTTGTAAATTCTACTCCCCCGACTTTTCCAAAATTAAAAGAATTTACTTATCAGTCGAAACAGTCAAAGACAAAGTACTCTTTCAAAAATCAAGAGCCTTCTAACCAATTTCATCCCTTATTATTATCATCATTGAATTACCAAAAAGAGACAGTTCCTTGCACGAAGTTTTTGATCAACTCCTCCTGTAAGCCTATTCAAACGTCAGCTTGTGTTCGGAATTTTAACCCACCTTGTTCCTTAAATGAAGCACCAGGTGTAGATCCCAATAACGTAACTGATTCTCGTATGAGAACAGAGTTTATACGATCTCTTATGGGTGGTGATGTAGCTTATTCCTTATTACGTGATTCTGGATTATACTGATTAGCTAAGGTCTAATATATTTGCTTTTAATATTATTTGCGCTATTGGTATTAACGCTTATAGTGAGGGAT]
[-] EMBL CD192193             [                                                                                                                                                                                                                                                                                                                                                          CAGTTCCTTGCACGAAGTTTTTGATCAACTCCTCCTGTAAGCCTATTCAAACGTCAGCTTGTGTTCGGAATTTTAACCCACCTTGTTCCTTAAATGAAGCACCAGGAGTAGATCCCAATAACGTAACTGATTCTCGTATGAGAACAGAGTTTATACGATCTCTT                                                                                                                          ]




>consensus_8669#1
GAATTCGGCACGAGGTTAAAACTCCTTTTTTAAGGTCGAAATCAGGCAACTAACCATCAA
ATTAACTTGTCTAACCCAAAGTTTGATCTTATGCCTGATCATGTAACAGTTCCTGTTGAT
ATGAATTATCAGTCTTCCAATAATGTAATTTCCGATGAATCGTTGGTCCCAATCCACCTG
GATGAAGAAACTGATTTTGTAAATTCTACTCCCCCGACTTTTCCAAAATTAAAAGAATTT
ACTTATCAGTCGAAACAGTCAAAGACAAAGTACTCTTTCAAAAATCAAGAGCCTTCTAAC
CAATTTCATCCCTTATTATTATCATCATTGAATTACCAAAAAGAGACAGTTCCTTGCACG
AAGTTTTTGATCAACTCCTCCTGTAAGCCTATTCAAACGTCAGCTTGTGTTCGGAATTTT
AACCCACCTTGTTCCTTAAATGAAGCACCAGGTGTAGATCCCAATAACGTAACTGATTCT
CGTATGAGAACAGAGTTTATACGATCTCTTATGGGTGGTGATGTAGCTTATTCCTTATTA
CGTGATTCTGGATTATACTGATTAGCTAAGGTCTAATATATTTGCTTTTAATATTATTTG
CGCTATTGGTATTAACGCTTATAGTGAGGGAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8669#0      ACCATTTGGAGTATATGCCAGATATTATTTCGACTTGTTAACCGTTGGGGAGAGTGCTGG 60
consensus_8669#1      ------------------------------------------------------------
                                                                                  

consensus_8669#0      AGTTGCAAATCAAGCTGTTAAACGCAAACGCTTAACTCCTGAAAGAGCACGCAACTTCCG 120
consensus_8669#1      ------------------------------------------------------------
                                                                                  

consensus_8669#0      AATTTTACCTACTAATTTGGAAATATGTACATCGGACAAAACATTATTAAATAGAGGATT 180
consensus_8669#1      ------------------------------------------------------------
                                                                                  

consensus_8669#0      TCTTTTTGACTTACCCTCTTTCACAAAATCAGAAGTATTGTGCAATAAAAAAGAAAGACA 240
consensus_8669#1      ------------------------------------------------------------
                                                                                  

consensus_8669#0      AAAGCATATTATTCAGGAATCAACGGAAGTTAAGTGTTACAAAGACGGTAATCATCAAAA 300
consensus_8669#1      -----------------------------------------------GAATTCGGCACGA 13
                                                                     * * **  **  *

consensus_8669#0      AATGTTCATTAAAACTCCTTTTTTAAG-TCGAAATCAGGCAACTAACCATCAAATTAACT 359
consensus_8669#1      GG------TTAAAACTCCTTTTTTAAGGTCGAAATCAGGCAACTAACCATCAAATTAACT 67
                              ******************* ********************************

consensus_8669#0      TGTCTAACCCAAAGTTTGATCTTATGCCTGATCATGTAACAGTTCCTGTTGATATGAATT 419
consensus_8669#1      TGTCTAACCCAAAGTTTGATCTTATGCCTGATCATGTAACAGTTCCTGTTGATATGAATT 127
                      ************************************************************

consensus_8669#0      ATCAGTCTTCCAATAATGTAATTTCCGATGAATCGTTGGTCCCAATCCACCTGGATGAAG 479
consensus_8669#1      ATCAGTCTTCCAATAATGTAATTTCCGATGAATCGTTGGTCCCAATCCACCTGGATGAAG 187
                      ************************************************************

consensus_8669#0      AAACTGATTTTGTAAATTCTACTCCCCCGACTTTTCCAAAATTAAAAGAATTTACTTATC 539
consensus_8669#1      AAACTGATTTTGTAAATTCTACTCCCCCGACTTTTCCAAAATTAAAAGAATTTACTTATC 247
                      ************************************************************

consensus_8669#0      AGTCGAAACAGTCAAAGACAAAGTACTCTTTCAAAAATCAAGAGCCTTCTAACCAATTTC 599
consensus_8669#1      AGTCGAAACAGTCAAAGACAAAGTACTCTTTCAAAAATCAAGAGCCTTCTAACCAATTTC 307
                      ************************************************************

consensus_8669#0      ATCCCTTATTATTATCATCATTGAATTACCAAAAAGA----------------------- 636
consensus_8669#1      ATCCCTTATTATTATCATCATTGAATTACCAAAAAGAGACAGTTCCTTGCACGAAGTTTT 367
                      *************************************                       

consensus_8669#0      ------------------------------------------------------------
consensus_8669#1      TGATCAACTCCTCCTGTAAGCCTATTCAAACGTCAGCTTGTGTTCGGAATTTTAACCCAC 427
                                                                                  

consensus_8669#0      ------------------------------------------------------------
consensus_8669#1      CTTGTTCCTTAAATGAAGCACCAGGTGTAGATCCCAATAACGTAACTGATTCTCGTATGA 487
                                                                                  

consensus_8669#0      ------------------------------------------------------------
consensus_8669#1      GAACAGAGTTTATACGATCTCTTATGGGTGGTGATGTAGCTTATTCCTTATTACGTGATT 547
                                                                                  

consensus_8669#0      ------------------------------------------------------------
consensus_8669#1      CTGGATTATACTGATTAGCTAAGGTCTAATATATTTGCTTTTAATATTATTTGCGCTATT 607
                                                                                  

consensus_8669#0      -------------------------
consensus_8669#1      GGTATTAACGCTTATAGTGAGGGAT 632