cluster # 8673

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Schistosoma mansoni
cluster # 8673 cluster # 8673 Sequences # 7 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8673#0 length = 978 sequences # 5

consensus_8673#1 length = 427 sequences # 1
consensus_8673#2 length = 133 sequences # 1

consensusID : consensus_8673#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 978
fasta sequence

                              [GTTCTGGATTGCAGTTAACTCCTATGGTCGTAAAGAACTATACGATTCCGTCGTCTGTTTATAACCAACACTCATGCAATATATTCGGGTTACATAACATACCAACTAATGCCGTTGTTGTGTGCTTATCGTCGGAGCGTGGTAGACAGGGAAGCCTGCTTAGATTTTCATCTGTTTCATCGTCAAGTTGGGACGTTATCACAGTGAAAAGTACCTTTGCAAATATGGTTAAGCTAACGGACAATGATTTTCTGTTAACCTCTTCATCGTTGGAGCCCACCACTGGGGCTGTATATCATTTAGATTCCTCTGGTATTCCAGTTTTAAAATATTTTGTCAATAATTCTATGATTGGATGTTTGGGAACGCTAAATGGTCGATCGTATTTATTTACACTTCATCACAATGTAGATCAGTATTTTAAGAATCTGGCTCTAAACATCTATGATTTAGAATCTGGTGAATTATCCAAAGAACTACCACCTCGTCATTTCACTCTTGCTAGTCATCATGGTACAATTGAATCGATATCTGCTATCATGTTTACTGATGCTACCGGTGCTCCGAGTTTCCGATTATTGCTATATACAGAGGATGATGCTGTACAACTAATCCGACAAAATGGTAAACAACAATGGATTCGTGAAGAGGCGTTAGCGAACATAGTTGCTGTTGAGGTAATCGATTTACCTGTTTCAGAGTTTCAAGCGAAAATTGAAGAAGAGTTTAATCATGCAAGCAACAACATTCTGGAAATGTTTATTCAACGCTTAAAATCACAGATGTCTCAATTAGTTGTATGGACGAAGCATTGGATNTATAACATACCANATNTATTCATGGCTATTGTATCGTCTAAACCGTTTTTCAAGCATTCATCTAATGGTGATCTGTCANAACGTAGAGTACTACCATCATCATCTCCTTCTTTACAGGACTATTNCATCAGTGATCCATCGTCTTTTTCAAGTATTCACA]

[+] EMBL CD118652             [GTTCTGGATTGCAGTTAACTCCTATGGTCGTAAAGAACTATACGATTCCGTCGTCTGTTTATAACCAACACTCATGCAATATATTCGGGTTACATAACATACCAACTAATGCCGTTGTTGTGTGCTTATCGTCGGAGCGTGGTAGACAGGGAAGCCTGCTTAGATTTTCATCTGTTTCATCGTCAAGTTGGGACGTTATCACAGTGAAAAGTACCTTTGCAAATATGGTTAAGCTAACGGACAATGATTTTCTGTTAACCTCTTCATCGTTGGAGCCCACCACTGGGGCTGTATATCATTTAGATTCCTCTGGTATTCCAGTTTTAAAATATTTTGTCAATAATTCTATGATTGGATGTTTGGGAACGCTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD118576             [GTTCTGGATTGCAGTTAACTCCTATCTTCGTAAAGAACTATACGATTCCGTCGTCTGTTTATAACCAACACTCATGCAATATATTCGGGTTACATAACATACCAACTAATGCCGTTGTTGTGTGCTTATCGCCGGAGCGTGGTAGACAGGGAAGCCTGCTTAGATTTTCATCTGTTTCATCGTCAAGTTGGGACGTTATCACAGTGAAAAGTACCTTTGCAAATATGGTTAAGCTAACGGACAATGATTTTCTGTTAACCTCTTCATCGTTGGAGCCCACCACTGGGGCTGTATATCATTTAGATTCCTCTGGTATTCCAGCTTTAAAATATTTTGTCAATAATTCTATGATTGGATGTTTGGGAACGCTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD153089             [                                                                                                                                                                                                                                                                                         ACTGGGGCTGTATATCATTTAGATTCCTCTGGTATTCCAGTTTTAAAATATTTTGTCAATAATTCAATGATTGGATGTTTGGGAACGCTAAATGGTCGATCGTATTTATTTACACTTCATCACAATGTAGATCAGTATTTTAAGAATCTGGCTCTAAACATCTATGATTTAGAATCTGGTGAATTATCCAAAGAACTACCACCTCGTCATTTCACTCTTGCTAGTCATCATGGTACAATTGAATCGATATCTGCTATCATGTTTACTGATGCTACCGGTGCTCCGAGTTTCCGATTATTGCTATATACAGAGGATGATGCTGTACAACTAATCCGACAAAATGGTAAACAACAATGGATTCGTGAAGAGGCGTTAGCGAACATAGTTGCTGTTGAGGTAATCGATTTACCTGTTTCAGAGTTTCAAGCGAAAATTGAAGAAGAGTTTA                                                                                                                                                                                                                                                         ]
[+] EMBL CD185749             [                                                                                                                                                                                                                                                                                                        CATTTAGATTCCTCTGGTATTCCAGTTTTAAAATATTTTGTCAATAATTCTATGATTGGATGTTTGGGAACGCTAAATGGTCGATCGTATTTATTTACACTTCATCACAATGTAGATCAGTATTTTAAGAATCTGGCTCTAAACATCTATGATTTAGAATCTGGTGAATTATCCAAAGAACTACCACCTCGTCATTTCACTCTTGCTAGTCATCATGGTACAATTGAATCGATATCTGCTATCATGTTTACTGATGCTACCGGTGCTCCGAGTTTCCGATTATTGCTATATACAGAGGATGATGCTGTACAACTAATCCGACAAAATGGTAAACAACAATGGATTCGTGAAGAGGCGTTAGCGAACATAGTTGCTGTTGAGGTAATCGATTTACCTGTTTCAGAGTTTCAAGCGAAAATTGAAGAAGAGTTTAATCATGCAAGCAACAACATTCTGGAAATGTTTATTCAACGCTTAAAATCACAGATGTCTCAATTAGTTGTATGGACGAAGCATTGGATNTATAACATACCANATNTATTCATGGCTATTGTATCGTCTAAACCGTTTTTCAAGCATTCATCTAATGGTGATCTGTCANAACGTAGAGTACTACCATCATCATCTCCTTCTTTACAGGACTATTNCATCAGTGATCCATCGTCTTTTTCAAGTATTCACA]
[-] EMBL CD119158             [                                                                                                                                                                                                                                                                                                                                                         CTATGATTGGATGTTTGGGAACGCTAAATGGTCGATCGTATTTATTTACACTTCATCACAATGTAGATCAGTATTTTAAGAATCTGGCTCTAAACATCTATGATTTAGAATCTGGTGAATTATCCAAAGAACTACCACCTCGTCATTTCACTCTTGCTAGTCATCATGGTACAATTGAATCGATATCTGCTATCATGTTTACTGATGCTACCGGTGCTCCGAGTTTCCGATTATTGCTATATACAGAGGATGATGCTGTACAACTAATCCGACAAAATGGTAAACAACAATGGATTCGTGAAGAGGCGTTAGCGAACATAGTTGCTGTTGAGGTAATCGATTTACCTGTTTCAGAGTTTCAAGCGAAAATTGAAGAAGAGTTTAATCATGCAAGCAACAACATTCTGGAAATGTTTATTCAACGCT                                                                                                                                                                                                               ]




>consensus_8673#0
GTTCTGGATTGCAGTTAACTCCTATGGTCGTAAAGAACTATACGATTCCGTCGTCTGTTT
ATAACCAACACTCATGCAATATATTCGGGTTACATAACATACCAACTAATGCCGTTGTTG
TGTGCTTATCGTCGGAGCGTGGTAGACAGGGAAGCCTGCTTAGATTTTCATCTGTTTCAT
CGTCAAGTTGGGACGTTATCACAGTGAAAAGTACCTTTGCAAATATGGTTAAGCTAACGG
ACAATGATTTTCTGTTAACCTCTTCATCGTTGGAGCCCACCACTGGGGCTGTATATCATT
TAGATTCCTCTGGTATTCCAGTTTTAAAATATTTTGTCAATAATTCTATGATTGGATGTT
TGGGAACGCTAAATGGTCGATCGTATTTATTTACACTTCATCACAATGTAGATCAGTATT
TTAAGAATCTGGCTCTAAACATCTATGATTTAGAATCTGGTGAATTATCCAAAGAACTAC
CACCTCGTCATTTCACTCTTGCTAGTCATCATGGTACAATTGAATCGATATCTGCTATCA
TGTTTACTGATGCTACCGGTGCTCCGAGTTTCCGATTATTGCTATATACAGAGGATGATG
CTGTACAACTAATCCGACAAAATGGTAAACAACAATGGATTCGTGAAGAGGCGTTAGCGA
ACATAGTTGCTGTTGAGGTAATCGATTTACCTGTTTCAGAGTTTCAAGCGAAAATTGAAG
AAGAGTTTAATCATGCAAGCAACAACATTCTGGAAATGTTTATTCAACGCTTAAAATCAC
AGATGTCTCAATTAGTTGTATGGACGAAGCATTGGATNTATAACATACCANATNTATTCA
TGGCTATTGTATCGTCTAAACCGTTTTTCAAGCATTCATCTAATGGTGATCTGTCANAAC
GTAGAGTACTACCATCATCATCTCCTTCTTTACAGGACTATTNCATCAGTGATCCATCGT
CTTTTTCAAGTATTCACA

consensusID : consensus_8673#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 427
fasta sequence

                              [CACGATATTGCGCCATTGCCTGCGTGGATAACTCTCATATCTGACATAGTTAGACTCCACTGATCACGGCTTCTCATTAGAACTTCAGGAATCGCATCTTGAAGCTAGTGACTAGTGATCACATGATACAAGAATTAGCTGTTCAGTGCTTTCTGGTTTTTACTAGATGTTGAGTTTGGGTGTGTTCGTTATGTTGATATGAAACTGGTTGTTAAAAGTGATTTACCTATTGTAATTGTTTTGATACTGTGGGAGAGCTTAGAATTATGTTCTATATTTCATTCTGTTGTTTCAACAGACAACATTCTGGAAATGTTTATTCAACGCTTAAAATCACAGATGGCTTAATTAGTTGTAAGTGATTGATTTCTCTTACCTTATATACAGTTTGTTTAATTTTGTTTATTTAATACTTAGAGTAACAAAG]

[+] EMBL CD169637             [CACGATATTGCGCCATTGCCTGCGTGGATAACTCTCATATCTGACATAGTTAGACTCCACTGATCACGGCTTCTCATTAGAACTTCAGGAATCGCATCTTGAAGCTAGTGACTAGTGATCACATGATACAAGAATTAGCTGTTCAGTGCTTTCTGGTTTTTACTAGATGTTGAGTTTGGGTGTGTTCGTTATGTTGATATGAAACTGGTTGTTAAAAGTGATTTACCTATTGTAATTGTTTTGATACTGTGGGAGAGCTTAGAATTATGTTCTATATTTCATTCTGTTGTTTCAACAGACAACATTCTGGAAATGTTTATTCAACGCTTAAAATCACAGATGGCTTAATTAGTTGTAAGTGATTGATTTCTCTTACCTTATATACAGTTTGTTTAATTTTGTTTATTTAATACTTAGAGTAACAAAG]




>consensus_8673#1
CACGATATTGCGCCATTGCCTGCGTGGATAACTCTCATATCTGACATAGTTAGACTCCAC
TGATCACGGCTTCTCATTAGAACTTCAGGAATCGCATCTTGAAGCTAGTGACTAGTGATC
ACATGATACAAGAATTAGCTGTTCAGTGCTTTCTGGTTTTTACTAGATGTTGAGTTTGGG
TGTGTTCGTTATGTTGATATGAAACTGGTTGTTAAAAGTGATTTACCTATTGTAATTGTT
TTGATACTGTGGGAGAGCTTAGAATTATGTTCTATATTTCATTCTGTTGTTTCAACAGAC
AACATTCTGGAAATGTTTATTCAACGCTTAAAATCACAGATGGCTTAATTAGTTGTAAGT
GATTGATTTCTCTTACCTTATATACAGTTTGTTTAATTTTGTTTATTTAATACTTAGAGT
AACAAAG

consensusID : consensus_8673#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 133
fasta sequence

                              [TTACAAACTTTAGGTTGGTTGATGAGGCTATTTACACTTCATCACAATGTAGATCAGTATTTTAAGAATCTGGCTCTAAACATCTATGATTTAGAATCTGGTGAATTATCCAAAGAACTACCACCTCGTCATA]

[+] EMBL CD061251             [TTACAAACTTTAGGTTGGTTGATGAGGCTATTTACACTTCATCACAATGTAGATCAGTATTTTAAGAATCTGGCTCTAAACATCTATGATTTAGAATCTGGTGAATTATCCAAAGAACTACCACCTCGTCATA]




>consensus_8673#2
TTACAAACTTTAGGTTGGTTGATGAGGCTATTTACACTTCATCACAATGTAGATCAGTAT
TTTAAGAATCTGGCTCTAAACATCTATGATTTAGAATCTGGTGAATTATCCAAAGAACTA
CCACCTCGTCATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8673#0      GTTCTGGATTGCAGTTAACTCCTATGGTCGTAAAGAACTATACGATTCCGTCGTCTGTTT 60
consensus_8673#2      ------------------------------------------------------------
consensus_8673#1      ------------------------------------------------------------
                                                                                  

consensus_8673#0      ATAACCAACACTCATGCAATATATTCGGGTTACATAACATACCAACTAATGCCGTTGTTG 120
consensus_8673#2      ------------------------------------------------------------
consensus_8673#1      ------------------------------------------------------------
                                                                                  

consensus_8673#0      TGTGCTTATCGTCGGAGCGTGGTAGACAGGGAAGCCTGCTTAGATTTTCATCTGTTTCAT 180
consensus_8673#2      ------------------------------------------------------------
consensus_8673#1      --------------------------------------------CACGATATTGCGCCAT 16
                                                                                  

consensus_8673#0      CGTCAAGTTGGGACGTTATCACAGTGAAAAGTACCTTTGCAAATATGGTTAAGCTAACGG 240
consensus_8673#2      ------------------------------------------------------------
consensus_8673#1      TGCCTGCGTGGATAACTCTCATA-TCTGACATAGTTAGACTCCACTGATCACGGCTTCTC 75
                                                                                  

consensus_8673#0      ACAATGATTTTCTGTTAACCTCTTCATCGTTGGAGCCCACCACTGGGGCTGTATATCATT 300
consensus_8673#2      ------------------------------------------------------------
consensus_8673#1      ATTAGAACTTCAGGAATCGCATCTTGAAGCTAGTGACTAGTGATCACATGATACAAGAAT 135
                                                                                  

consensus_8673#0      TAGATTCCTCTGGTATTCCAGTTTTAAAATATTTTGTCAATAATTCTATGATTGGATGTT 360
consensus_8673#2      -----------------------------------------------------------T 1
consensus_8673#1      TAGCTGTTCAGTGCTTTCTGGTTTTTA-----CTAGATGTTGAGTTTGGGTGTGTTCGTT 190
                                                                                 *

consensus_8673#0      -TGGGAACGCTAAAT-GGTCGATCGTATTTATTTACACTTCATCACAATGTAGATCAGTA 418
consensus_8673#2      -TACAAACTTTAGGTTGGTTGAT-GAGGCTATTTACACTTCATCACAATGTAGATCAGTA 59
consensus_8673#1      ATGTTGATATGAAACTGGTTGTTAAAAGTGATTTAC---CTATTGTAAT-TGTTTTGATA 246
                       *    *    *    *** * *       ******     **   *** *   *   **

consensus_8673#0      TTTTAAGAATCTGGCTCTAAACATCTATGATTTAGAATCTGGTGAATTATCCAAAGAACT 478
consensus_8673#2      TTTTAAGAATCTGGCTCTAAACATCTATGATTTAGAATCTGGTGAATTATCCAAAGAACT 119
consensus_8673#1      CTGTGGGAG---AGCTTAGAAT---TATGTTCTATATTTCATTCTGTTGTTTCAACAGAC 300
                       * *  **     ***   **    **** * ** * *    *   ** *   ** *   

consensus_8673#0      ACCACCTCGTCA---TTTCACTCTTGCTAGTCATCATGGTACAATTGAATCGATATCTGC 535
consensus_8673#2      ACCACCTCGTCA---TA------------------------------------------- 133
consensus_8673#1      AACATTCTGGAAATGTTTATTCAACGCTTAAAATCACAGATGGCTTAATTAGTTGTAAGT 360
                      * **    *  *   *                                            

consensus_8673#0      TATCATGTTTACTGATGCTACCGGTGCTCCGAGTTTCCGATTATTGCTATATACAGAGGA 595
consensus_8673#2      ------------------------------------------------------------
consensus_8673#1      GATTGATTTCTCTTACCTTATATACAGTTTGT-TTAATTTTGTTTATTTAATACTTAGAG 419
                                                                                  

consensus_8673#0      TGATGCTGTACAACTAATCCGACAAAATGGTAAACAACAATGGATTCGTGAAGAGGCGTT 655
consensus_8673#2      ------------------------------------------------------------
consensus_8673#1      TAACAAAG---------------------------------------------------- 427
                                                                                  

consensus_8673#0      AGCGAACATAGTTGCTGTTGAGGTAATCGATTTACCTGTTTCAGAGTTTCAAGCGAAAAT 715
consensus_8673#2      ------------------------------------------------------------
consensus_8673#1      ------------------------------------------------------------
                                                                                  

consensus_8673#0      TGAAGAAGAGTTTAATCATGCAAGCAACAACATTCTGGAAATGTTTATTCAACGCTTAAA 775
consensus_8673#2      ------------------------------------------------------------
consensus_8673#1      ------------------------------------------------------------
                                                                                  

consensus_8673#0      ATCACAGATGTCTCAATTAGTTGTATGGACGAAGCATTGGATNTATAACATACCANATNT 835
consensus_8673#2      ------------------------------------------------------------
consensus_8673#1      ------------------------------------------------------------
                                                                                  

consensus_8673#0      ATTCATGGCTATTGTATCGTCTAAACCGTTTTTCAAGCATTCATCTAATGGTGATCTGTC 895
consensus_8673#2      ------------------------------------------------------------
consensus_8673#1      ------------------------------------------------------------
                                                                                  

consensus_8673#0      ANAACGTAGAGTACTACCATCATCATCTCCTTCTTTACAGGACTATTNCATCAGTGATCC 955
consensus_8673#2      ------------------------------------------------------------
consensus_8673#1      ------------------------------------------------------------
                                                                                  

consensus_8673#0      ATCGTCTTTTTCAAGTATTCACA 978
consensus_8673#2      -----------------------
consensus_8673#1      -----------------------