These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8679#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1275 fasta sequence [GCTCGGTACCCCAGGTGGAAATAGGATGTTACAAAAGTGCTCTGGACATTTTTCTGTTATGGGACAAGTGGTCTGAAATAATCGAATGCTATATCCACCTAAATAAGAGAGAAAAAGCAGAAGAAGTGATTCGTTCTCGTCTAAATTCTGGAGATGAATCTGCTGAATTATATTGTTCTCTTGGAGATGTGACAAATGATCGCCAACACTATTTAAAGGCTTGGGATGTATCTGGTTGTAAGTCGGCTCGAGCAATACGCAGCTTAGCTGTTACATATATGTACACAGATAAAGACTATCAAAAAGCAATTGAATGTTTTGAAAAATCACTAGAAATTAACACTTTGCAAGTTAATGTATGGTTTACATTTGGATGTTGTTGTCTTCAAGCCAAGGAGTTTGTAAAAGCTGAAAATGCTTTTCGTTCATGCGTTCGTTTAGATCCAGATAATTTTGAAGCGTGGAATAATTGTGCTACTGCTGTCCTGATTCAAGGAAAAAAGAATATAGCATTAAAACTAATGAAAGAAGCGTGTAAATATAGTTATGAAAACTGGCGCATATGGGAAAATATTCTGTTGATTAGTGCTGATGTAAAAGCTTTTCATGAAACTATATATGCCTATCATCGCCTATTAGATTTACAAGGAAAGTATGCANATCTACAAGTCCTCAGTGTTATGGTTAAAGGTGTTATTTTAAATGAAATGGATTCTACAGGAAACCCTGCAAGTAATTTACGTGCCAAGCTACTTGAATTGTTTGGTCGAGTTACAGCATCGACTCCTAACGACGCTGTTATATGGAATGAATATGCACATCTTTTGGTTGATGAACTTCCTCAAACGACTTATACTACATATCAACGTGCTGTCCACTGTCTTCAAGCAGCTCATCGTTGTCGTATACAATCAAGTGAAGGACCATGGGAACAATCAACAAAAAAATGTGAAACTATTATTGATGGTTTAAAAGCTTTACTTGATTTATTAAATAATCCTCCTAAATTAAAAAATGATGATAATGAATCGAATGAAGAAGATCAACTTAATACTTTCATTCAATCAGCCTTGGCCACTCTACGAATAAGCATAAAATCTGTAATTTCCAAAATGAAGATTGCTGAAGAATCTATTCTTTCAACCGATGTTCAAGATATGATTCATTCCTCAGTTAAAGATTTAAATGAATTATTAATTGATGTTGAAAGAAAATTAAACTAAACTCTTACGTTGTATATGCTTTTTTTATCGACTATCGTAATATCAATAAAAG] [+] EMBL CD129570 [GCTCGGTACCCCAGGTGGAAATAGGATGTTACAAAAGTGCTCTGGACATTTTTCTGTTATGGGACAAGTGGTCTGAAATAATCGAATGCTATATCCACCTAAATAAGAGAGAAAAAGCAGAAGAAGTGATTCGTTCTCGTCTAAATTCTGGAGATGAATCTGCTGAATTATATTGTTCTCTTGGAGATGTGACAAATGATCGCCAACACTATTTAAAGGCTTGGGATGTATCTGGTTGTAAGTCGGCTCGAGCAATACGCAGCTTAGCTGTTACATATATGTACACAGATAAAGACTATCAAAAAGCAATTGAATGTTTTGAAAAATCACTAGAAATTAACACTTTGCAAGTTAATGTATGGTTTACATTTGGATGTTGTTGTCTTCAAGCCAAGGAGTTTGTAAAAGCTGAAAATGCTTTTCGTTCATGCGTTCGTTTAGATCCAGATAATTTTGAAGCGTGGAATAATTGT ] [+] EMBL CD061340 [ gacaacATAGGATGTTACAAAAGTGCTCTGGACATTTTACTG TATGGGACAAGTGGTCTGAAATAATCGAATGCTATATCCACCTAAATAAGAGAGAAAAAGCAGAAGAAGTGATTCGTTCTCGTCTAAATTCTGGAGATGAATCTGCTGAATTATATTGTTCTCTTGGAGATGTGACAAATGATCGCCAACACTATTTAAAGGCTTGGGATGTATCTGGTTGTAAGTCGGCTCGAGCAATACGCAGCTTAGCT ] [+] EMBL CD078291 [ ATATTGTTCTCTTGGAGATGTGACAAATGATCGCCAACACTATTTAAAGGCTTGGGATGTATCTGGTTGTAAGTCGGCTCGAGCAATACGCAGCTTAGCTGTTACATATATGTACACAGATAAAGACTATCAAAAAGCAATTGAATGTTTTGAAAAATCACTAGAAATTAACACTTTGCAAGTTAATGTATGGTTTACATTTGGATGTTGTTGTCTTCAAGCCAAGGAGTTTGTAAAAGCTGAAAATGCTTTTCGTTCATGCGTTCGTTTAGATCCAGATAATTTTGAAGCGTGGAATAATTGTGCTACTGCTGTCCTGATTCAAGGAAAAAAGAATATAGCATTAAAACTAATGAAAGAAGCGTGTAAATATAGTTATGAAAACTGGCGCATATGGGAAAATATTCTGTTGATTAGTGCTGATGTAAAAGCTTTTCATGAAACTATATATGCCTATCATCGCCTATTAGATTTACAAGGAAAGTATGCANATCTACAAGTCCTCAGTGTTATGGTTAAAGGTGTTATTTTAAATGAAATGGATTCTACAGGANACCCTGCAAGTAATTTACGTGCCAAGCTACTTGAATTGTTTGGTCGAGTTACAGCATCGACTCCTAACGACGCTGTTAT ] [+] EMBL CD078378 [ ATATTGTTCTCTTGGAGATGTGACAAATGATCGCCAACACTATTTAAAGGCTTGGGATGTATCTGGTTGTAAGTCGGCTCGAGCAATACGCAGCTTAGCTGTTACATATATGTACACAGATAAAGACTATCAAAAAGCAATTGAATGTTTTGAAAAATCACTAGAAATTAACACTTTGCAAGTTAATGTATGGTTTACATTTGGATGTTGTTGTCTTCAAGCCAAGGAGTTTGTAAAAGCTGAAAATGCTTTTCGTTCATGCGTTCGTTTAGATCCAGATAATTTTGAAGCGTGGAATAATTGTGCTACTGCTGTCCTGATTCAAGGAAAAAAGAATATAGCATTAAAACTAATGAAAGAAGCGTGTAAATATAGTTATGAAAACTGGCGCATATGGGAAAATATTCTGTTGATTAGTGCTGATGTAAAAGCTTTTCATGAAACTATATATGCCTATCATCGCCTATTAGATTTACAAGGAAAGTATGCANATCTACAAGTCCTCAGTGTTATGGTTAAAGGTGTTATTTTAAATGAAATGGATTCTACAGGAAACCCTGNCAGTAATTTACGTGCCAAGCTACTTGAATTGTTTGGTCGAGTTACAGCATCGACTCCTAACGACGCTGn ] [-] EMBL CD072939 [ GTTAAAGGTGTTA TTTAAATGAAATGGATTCTACAGGAAACCCTGCAAGTAATTTACGTGCCAAGCTACTTGAATTGTTTGGTCGAGTTACAGCATCGACTCCTAACGACGCTGTTATATGGAATGAATATGCACATCTTTTGGTTGATGAACTTCCTCAAACGACTTATACTACATATCAACGTGCTGTCCACTGTCTTCAAGCAGCTCATCGTTGTCGTATACAATCAAGTGAAGGACCATGGGAACAATCAACAAAAAAATGTGAAACTATTATTGATGGTTTAAAAGCTTTACTTGATTTATTAAATAATCCTCCTAAATTAAAAAATGATGATAATGAATCGAATGAAGAAGATCAACTTAATACTTTCATTCAATCAGCCTTGGCCACTCTACGAATAAGCATAAAATCTGTAATTTCCAAAATGAAGATTGCTGAAGAATCTATTCTTTCAACCGATGTTCAAGATATGATTCATTCCTCAGTTAAAGATTTAAATGAATTATTAATTGATGTTGAAAGAAAATTAAACTAAACTCTTACGTTGTATATGCTTTTTTTATCGACTATCGTAATATCAATAAAAG] consensusID : consensus_8679#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 519 fasta sequence [ATATAACAGAACAGCAGTGTTTAGCTTACATCAATACCGTTATCCGGGCTATTTACCCGGATTCTGAAAATGAAATAAAAAGTAGTTCTTCTTGGCCTATTGCCACAGAAACATTGTTTAGAAGAAGTTTACTGGAACATAATTCTGTTAGAAGAACTGAGCGTGCATTATCTCAGTTAGAGGAGTTAAGCTGTCAGTTTAAGAGAACTAGTCCGTCGTTTTCTGAGAGATCTCCCAGTACCTTCTTCCTTTCCAGAATGCCGTCTATTTGGACTCTCCAAGTAGAGCAAGGTCGACTACTTATGAAAATAGGATGTTACAAAAGTGCTCTGGTCATTTTTCTGTTACGGGACAAGTGGTCTGAAATAATCGAATGCTATATCCACCTAAATAAGAGAGAAAAAGCAGAAGAAGTGATTCGTTCTCGTCTAAATTCTGGAGATGAATCTGCTGAATTATATTGTTCTCTTGGAGATGTGACANATGATCGCCAACACTATTTAAAGGCTTGNGATGTAT] [+] EMBL CD156840 [ATATAACAGAACAGCAGTGTTTAGCTTACATCAATACCGTTATCCGGGCTATTTACCCGGATTCTGAAAATGAAATAAAAAGTAGTTCTTCTTGGCCTATTGCCACAGAAACATTGTTTAGAAGAAGTTTACTGGAACATAATTCTGTTAGAAGAACTGAGCGTGCATTATCTCAGTTAGAGGAGTTAAGCTGTCAGTTTAAGAGAACTAGTCCGTCGTTTTCTGAGAGATCTCCCAGTACCTTCTTCCTTTCCAGAATGCCGTCTATTTGGACTCTCCAAGTAGAGCAAGGTCGACTACTTATGAAAATAGGATGTTACAAAAGTGCTCTGGTCATTTTTCTGTTACGGGACAAGTGGTCTGAAATAATCGAATGCTATATCCACCTAAATAAGAGAGAAAAAGCAGAAGAAGTGATTCGTTCTCGTCTAAATTCTGGAGATGAATCTGCTGAATTATATTGTTCTCTTGGAGATGTGACANATGATCGCCAACACTATTTAAAGGCTTGNGATGTAT] [+] EMBL CD156906 [ATATAACAGAACAGCAGTGTTTAGCTTACATCAATACCGTTATCCGGGCTATTTACCCGGATTCTGAAAATGAAATAAAAAGTAGTTCTTCTTGGCCTATTGCCACAGAAACATTGTTTAGAAGAAGTTTACTGGAACATAATTCTGTTAGAAGAACTGAGCGTGCATTATCTCAGTTAGAGGAGTTAAGCTGTCAGTCTAAGAGAACTAGTCCGTCGTTTTCTGAGAGATCTCCCAGTACCTTCTTCCTTTCCAGAATGCCGTCTATTTGGACTCTCCAAGTTGAGCAAGGTCGACTACTTATGAAAATAGGATGTTACAAAAGTGCTCTGGACATTTTTCTGTTATGGGACAAGTGGTCTGAAATAATCGAATGCTATATCCACCTAAATAAGAGAGAAAAAGCAGAAGAAGTGATTCGTTCTCGTCTAAATTCTGGAGATGAATCTGCTGAATTATATTGTTCTCTTGGAGATGTGACAAATGATCGCCAACACTATTTAAAGGCTTGNGATGTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8679#0 GCTCGGTACCCCAGGTGGAAATAGGATGTTACAAAAGTGCTCTGGACATTTTTCTGTTAT 60 consensus_8679#1 ------------------------------------------------------------ consensus_8679#0 GGGACAAGTGGTCTGAAATAATCGAATGCTATATCCACCTAAATAAGAGAGAAAAAGCAG 120 consensus_8679#1 ------------------------------------------------------------ consensus_8679#0 AAGAAGTGATTCGTTCTCGTCTAAATTCTGGAGATGAATCTGCTGAATTATATTGTTCTC 180 consensus_8679#1 ------------------------------------------------------------ consensus_8679#0 TTGGAGATGTGACAAATGATCGCCAACACTATTTAAAGGCTTGGGATGTATCTGGTTGTA 240 consensus_8679#1 ---------------------------------------------ATATAACAGAACAGC 15 ** ** * * consensus_8679#0 AGTCGGCTCGAGCAATACGCAGCTTAGCTGTTACATATATGTACACAGATAAAGACTATC 300 consensus_8679#1 AGT--GTTTAGCTTACAT-CAATACCGTTATCCGGGCTATTTACCCGGATTCTGAAAATG 72 *** * * * * ** * * * *** *** * *** ** ** consensus_8679#0 AAAAAGCAATTGAATGTT-TTGAAAAATCACTAGAAATTAACACTTTGCAAGTTAATGTA 359 consensus_8679#1 AAATAAAAAGTAGTTCTTCTTGGCCTATTGCCACAGA--AACATT------GTTTAGAAG 124 *** * ** * * ** *** ** * * * * **** * *** * consensus_8679#0 TGGTTTACATTTGGATGTTGTTGTCTTCAAGCCAAGGAGTTTGTAAAAGCTGAAAATGCT 419 consensus_8679#1 AAGTTTAC--TGGAACATAATTCTGTTAGAAGAACTGAGCGTGCATTATCTCAGTTAGAG 182 ****** * * * * ** * ** * * *** ** * * ** * * consensus_8679#0 TTTCGTTCATGCGTTCGTTTAGATCCAGATAATTTTGAAGCGTGGAATAATTGTGCTACT 479 consensus_8679#1 G--AGTTAAGCTGTCAGTTTAAGAG-AACTAGTCCGTCGTTTTCTGAGAGATCTCCCAGT 239 *** * ** ***** * ** * * * * * * * * * consensus_8679#0 GCTGTCCTGATTCAAGGAAAAAAGAATATAGCATTAAAACTAATGAAAGAAGCGTGTAAA 539 consensus_8679#1 ACCTTCTTCCTTTCCAGAATGCCGTCTAT----TTGGACTCTCCAAGTAGAGCAAGGTCG 295 * ** * ** *** * *** ** * * *** * consensus_8679#0 TATAGTTATGAAAACTGGCGCATATGGGAAAATATTCTGTTGATTAGTGC-TGATGTAAA 598 consensus_8679#1 ACTACTTATGAAAATAGGATGTTACA--AAAGTGCTCTGGTCATTTTTCTGTTACGGGAC 353 ** ********* ** ** *** * **** * *** * * * * * consensus_8679#0 AGCTTTTCATGAAACTATATATGCCTATCATCGCCTATTAGATTTACAAGGAAAGTATGC 658 consensus_8679#1 AAGTGGTC-TGAAATAATCGAATGCTATATCCACCTA--AATAAGAGAGAAAAAGCAGAA 410 * * ** ***** ** * **** * **** * * * **** * consensus_8679#0 ANATCTACAAGTCCTCAGTGTTATGGTTAAAGGTGT-TATTTTAAATGAAATGGATTCTA 717 consensus_8679#1 GAAGTGATTCGTTCTC-GTCTAAATTCTGGAGATGAATCTGCTGAATTATATTG-TTCTC 468 * * ** *** ** * * * ** ** * * * *** * ** * **** consensus_8679#0 CAGGAAACCCTGCAAGTAATTTACGTGCCAA-GCTACTTGAATTGTTTGGTCGAGTTACA 776 consensus_8679#1 TTGGAGATGTGACANATGATC-----GCCAACACTATTTAAAGGCTTGNGATGTAT---- 519 *** * ** * ** ***** *** ** ** ** * * * consensus_8679#0 GCATCGACTCCTAACGACGCTGTTATATGGAATGAATATGCACATCTTTTGGTTGATGAA 836 consensus_8679#1 ------------------------------------------------------------ consensus_8679#0 CTTCCTCAAACGACTTATACTACATATCAACGTGCTGTCCACTGTCTTCAAGCAGCTCAT 896 consensus_8679#1 ------------------------------------------------------------ consensus_8679#0 CGTTGTCGTATACAATCAAGTGAAGGACCATGGGAACAATCAACAAAAAAATGTGAAACT 956 consensus_8679#1 ------------------------------------------------------------ consensus_8679#0 ATTATTGATGGTTTAAAAGCTTTACTTGATTTATTAAATAATCCTCCTAAATTAAAAAAT 1016 consensus_8679#1 ------------------------------------------------------------ consensus_8679#0 GATGATAATGAATCGAATGAAGAAGATCAACTTAATACTTTCATTCAATCAGCCTTGGCC 1076 consensus_8679#1 ------------------------------------------------------------ consensus_8679#0 ACTCTACGAATAAGCATAAAATCTGTAATTTCCAAAATGAAGATTGCTGAAGAATCTATT 1136 consensus_8679#1 ------------------------------------------------------------ consensus_8679#0 CTTTCAACCGATGTTCAAGATATGATTCATTCCTCAGTTAAAGATTTAAATGAATTATTA 1196 consensus_8679#1 ------------------------------------------------------------ consensus_8679#0 ATTGATGTTGAAAGAAAATTAAACTAAACTCTTACGTTGTATATGCTTTTTTTATCGACT 1256 consensus_8679#1 ------------------------------------------------------------ consensus_8679#0 ATCGTAATATCAATAAAAG 1275 consensus_8679#1 ------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||