cluster # 8679

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Schistosoma mansoni
cluster # 8679 cluster # 8679 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8679#0 length = 1275 sequences # 5

consensus_8679#1 length = 519 sequences # 2

consensusID : consensus_8679#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1275
fasta sequence

                              [GCTCGGTACCCCAGGTGGAAATAGGATGTTACAAAAGTGCTCTGGACATTTTTCTGTTATGGGACAAGTGGTCTGAAATAATCGAATGCTATATCCACCTAAATAAGAGAGAAAAAGCAGAAGAAGTGATTCGTTCTCGTCTAAATTCTGGAGATGAATCTGCTGAATTATATTGTTCTCTTGGAGATGTGACAAATGATCGCCAACACTATTTAAAGGCTTGGGATGTATCTGGTTGTAAGTCGGCTCGAGCAATACGCAGCTTAGCTGTTACATATATGTACACAGATAAAGACTATCAAAAAGCAATTGAATGTTTTGAAAAATCACTAGAAATTAACACTTTGCAAGTTAATGTATGGTTTACATTTGGATGTTGTTGTCTTCAAGCCAAGGAGTTTGTAAAAGCTGAAAATGCTTTTCGTTCATGCGTTCGTTTAGATCCAGATAATTTTGAAGCGTGGAATAATTGTGCTACTGCTGTCCTGATTCAAGGAAAAAAGAATATAGCATTAAAACTAATGAAAGAAGCGTGTAAATATAGTTATGAAAACTGGCGCATATGGGAAAATATTCTGTTGATTAGTGCTGATGTAAAAGCTTTTCATGAAACTATATATGCCTATCATCGCCTATTAGATTTACAAGGAAAGTATGCANATCTACAAGTCCTCAGTGTTATGGTTAAAGGTGTTATTTTAAATGAAATGGATTCTACAGGAAACCCTGCAAGTAATTTACGTGCCAAGCTACTTGAATTGTTTGGTCGAGTTACAGCATCGACTCCTAACGACGCTGTTATATGGAATGAATATGCACATCTTTTGGTTGATGAACTTCCTCAAACGACTTATACTACATATCAACGTGCTGTCCACTGTCTTCAAGCAGCTCATCGTTGTCGTATACAATCAAGTGAAGGACCATGGGAACAATCAACAAAAAAATGTGAAACTATTATTGATGGTTTAAAAGCTTTACTTGATTTATTAAATAATCCTCCTAAATTAAAAAATGATGATAATGAATCGAATGAAGAAGATCAACTTAATACTTTCATTCAATCAGCCTTGGCCACTCTACGAATAAGCATAAAATCTGTAATTTCCAAAATGAAGATTGCTGAAGAATCTATTCTTTCAACCGATGTTCAAGATATGATTCATTCCTCAGTTAAAGATTTAAATGAATTATTAATTGATGTTGAAAGAAAATTAAACTAAACTCTTACGTTGTATATGCTTTTTTTATCGACTATCGTAATATCAATAAAAG]

[+] EMBL CD129570             [GCTCGGTACCCCAGGTGGAAATAGGATGTTACAAAAGTGCTCTGGACATTTTTCTGTTATGGGACAAGTGGTCTGAAATAATCGAATGCTATATCCACCTAAATAAGAGAGAAAAAGCAGAAGAAGTGATTCGTTCTCGTCTAAATTCTGGAGATGAATCTGCTGAATTATATTGTTCTCTTGGAGATGTGACAAATGATCGCCAACACTATTTAAAGGCTTGGGATGTATCTGGTTGTAAGTCGGCTCGAGCAATACGCAGCTTAGCTGTTACATATATGTACACAGATAAAGACTATCAAAAAGCAATTGAATGTTTTGAAAAATCACTAGAAATTAACACTTTGCAAGTTAATGTATGGTTTACATTTGGATGTTGTTGTCTTCAAGCCAAGGAGTTTGTAAAAGCTGAAAATGCTTTTCGTTCATGCGTTCGTTTAGATCCAGATAATTTTGAAGCGTGGAATAATTGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CD061340             [              gacaacATAGGATGTTACAAAAGTGCTCTGGACATTTTACTG TATGGGACAAGTGGTCTGAAATAATCGAATGCTATATCCACCTAAATAAGAGAGAAAAAGCAGAAGAAGTGATTCGTTCTCGTCTAAATTCTGGAGATGAATCTGCTGAATTATATTGTTCTCTTGGAGATGTGACAAATGATCGCCAACACTATTTAAAGGCTTGGGATGTATCTGGTTGTAAGTCGGCTCGAGCAATACGCAGCTTAGCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CD078291             [                                                                                                                                                                         ATATTGTTCTCTTGGAGATGTGACAAATGATCGCCAACACTATTTAAAGGCTTGGGATGTATCTGGTTGTAAGTCGGCTCGAGCAATACGCAGCTTAGCTGTTACATATATGTACACAGATAAAGACTATCAAAAAGCAATTGAATGTTTTGAAAAATCACTAGAAATTAACACTTTGCAAGTTAATGTATGGTTTACATTTGGATGTTGTTGTCTTCAAGCCAAGGAGTTTGTAAAAGCTGAAAATGCTTTTCGTTCATGCGTTCGTTTAGATCCAGATAATTTTGAAGCGTGGAATAATTGTGCTACTGCTGTCCTGATTCAAGGAAAAAAGAATATAGCATTAAAACTAATGAAAGAAGCGTGTAAATATAGTTATGAAAACTGGCGCATATGGGAAAATATTCTGTTGATTAGTGCTGATGTAAAAGCTTTTCATGAAACTATATATGCCTATCATCGCCTATTAGATTTACAAGGAAAGTATGCANATCTACAAGTCCTCAGTGTTATGGTTAAAGGTGTTATTTTAAATGAAATGGATTCTACAGGANACCCTGCAAGTAATTTACGTGCCAAGCTACTTGAATTGTTTGGTCGAGTTACAGCATCGACTCCTAACGACGCTGTTAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CD078378             [                                                                                                                                                                         ATATTGTTCTCTTGGAGATGTGACAAATGATCGCCAACACTATTTAAAGGCTTGGGATGTATCTGGTTGTAAGTCGGCTCGAGCAATACGCAGCTTAGCTGTTACATATATGTACACAGATAAAGACTATCAAAAAGCAATTGAATGTTTTGAAAAATCACTAGAAATTAACACTTTGCAAGTTAATGTATGGTTTACATTTGGATGTTGTTGTCTTCAAGCCAAGGAGTTTGTAAAAGCTGAAAATGCTTTTCGTTCATGCGTTCGTTTAGATCCAGATAATTTTGAAGCGTGGAATAATTGTGCTACTGCTGTCCTGATTCAAGGAAAAAAGAATATAGCATTAAAACTAATGAAAGAAGCGTGTAAATATAGTTATGAAAACTGGCGCATATGGGAAAATATTCTGTTGATTAGTGCTGATGTAAAAGCTTTTCATGAAACTATATATGCCTATCATCGCCTATTAGATTTACAAGGAAAGTATGCANATCTACAAGTCCTCAGTGTTATGGTTAAAGGTGTTATTTTAAATGAAATGGATTCTACAGGAAACCCTGNCAGTAATTTACGTGCCAAGCTACTTGAATTGTTTGGTCGAGTTACAGCATCGACTCCTAACGACGCTGn                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL CD072939             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           GTTAAAGGTGTTA TTTAAATGAAATGGATTCTACAGGAAACCCTGCAAGTAATTTACGTGCCAAGCTACTTGAATTGTTTGGTCGAGTTACAGCATCGACTCCTAACGACGCTGTTATATGGAATGAATATGCACATCTTTTGGTTGATGAACTTCCTCAAACGACTTATACTACATATCAACGTGCTGTCCACTGTCTTCAAGCAGCTCATCGTTGTCGTATACAATCAAGTGAAGGACCATGGGAACAATCAACAAAAAAATGTGAAACTATTATTGATGGTTTAAAAGCTTTACTTGATTTATTAAATAATCCTCCTAAATTAAAAAATGATGATAATGAATCGAATGAAGAAGATCAACTTAATACTTTCATTCAATCAGCCTTGGCCACTCTACGAATAAGCATAAAATCTGTAATTTCCAAAATGAAGATTGCTGAAGAATCTATTCTTTCAACCGATGTTCAAGATATGATTCATTCCTCAGTTAAAGATTTAAATGAATTATTAATTGATGTTGAAAGAAAATTAAACTAAACTCTTACGTTGTATATGCTTTTTTTATCGACTATCGTAATATCAATAAAAG]




>consensus_8679#0
GCTCGGTACCCCAGGTGGAAATAGGATGTTACAAAAGTGCTCTGGACATTTTTCTGTTAT
GGGACAAGTGGTCTGAAATAATCGAATGCTATATCCACCTAAATAAGAGAGAAAAAGCAG
AAGAAGTGATTCGTTCTCGTCTAAATTCTGGAGATGAATCTGCTGAATTATATTGTTCTC
TTGGAGATGTGACAAATGATCGCCAACACTATTTAAAGGCTTGGGATGTATCTGGTTGTA
AGTCGGCTCGAGCAATACGCAGCTTAGCTGTTACATATATGTACACAGATAAAGACTATC
AAAAAGCAATTGAATGTTTTGAAAAATCACTAGAAATTAACACTTTGCAAGTTAATGTAT
GGTTTACATTTGGATGTTGTTGTCTTCAAGCCAAGGAGTTTGTAAAAGCTGAAAATGCTT
TTCGTTCATGCGTTCGTTTAGATCCAGATAATTTTGAAGCGTGGAATAATTGTGCTACTG
CTGTCCTGATTCAAGGAAAAAAGAATATAGCATTAAAACTAATGAAAGAAGCGTGTAAAT
ATAGTTATGAAAACTGGCGCATATGGGAAAATATTCTGTTGATTAGTGCTGATGTAAAAG
CTTTTCATGAAACTATATATGCCTATCATCGCCTATTAGATTTACAAGGAAAGTATGCAN
ATCTACAAGTCCTCAGTGTTATGGTTAAAGGTGTTATTTTAAATGAAATGGATTCTACAG
GAAACCCTGCAAGTAATTTACGTGCCAAGCTACTTGAATTGTTTGGTCGAGTTACAGCAT
CGACTCCTAACGACGCTGTTATATGGAATGAATATGCACATCTTTTGGTTGATGAACTTC
CTCAAACGACTTATACTACATATCAACGTGCTGTCCACTGTCTTCAAGCAGCTCATCGTT
GTCGTATACAATCAAGTGAAGGACCATGGGAACAATCAACAAAAAAATGTGAAACTATTA
TTGATGGTTTAAAAGCTTTACTTGATTTATTAAATAATCCTCCTAAATTAAAAAATGATG
ATAATGAATCGAATGAAGAAGATCAACTTAATACTTTCATTCAATCAGCCTTGGCCACTC
TACGAATAAGCATAAAATCTGTAATTTCCAAAATGAAGATTGCTGAAGAATCTATTCTTT
CAACCGATGTTCAAGATATGATTCATTCCTCAGTTAAAGATTTAAATGAATTATTAATTG
ATGTTGAAAGAAAATTAAACTAAACTCTTACGTTGTATATGCTTTTTTTATCGACTATCG
TAATATCAATAAAAG

consensusID : consensus_8679#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 519
fasta sequence

                              [ATATAACAGAACAGCAGTGTTTAGCTTACATCAATACCGTTATCCGGGCTATTTACCCGGATTCTGAAAATGAAATAAAAAGTAGTTCTTCTTGGCCTATTGCCACAGAAACATTGTTTAGAAGAAGTTTACTGGAACATAATTCTGTTAGAAGAACTGAGCGTGCATTATCTCAGTTAGAGGAGTTAAGCTGTCAGTTTAAGAGAACTAGTCCGTCGTTTTCTGAGAGATCTCCCAGTACCTTCTTCCTTTCCAGAATGCCGTCTATTTGGACTCTCCAAGTAGAGCAAGGTCGACTACTTATGAAAATAGGATGTTACAAAAGTGCTCTGGTCATTTTTCTGTTACGGGACAAGTGGTCTGAAATAATCGAATGCTATATCCACCTAAATAAGAGAGAAAAAGCAGAAGAAGTGATTCGTTCTCGTCTAAATTCTGGAGATGAATCTGCTGAATTATATTGTTCTCTTGGAGATGTGACANATGATCGCCAACACTATTTAAAGGCTTGNGATGTAT]

[+] EMBL CD156840             [ATATAACAGAACAGCAGTGTTTAGCTTACATCAATACCGTTATCCGGGCTATTTACCCGGATTCTGAAAATGAAATAAAAAGTAGTTCTTCTTGGCCTATTGCCACAGAAACATTGTTTAGAAGAAGTTTACTGGAACATAATTCTGTTAGAAGAACTGAGCGTGCATTATCTCAGTTAGAGGAGTTAAGCTGTCAGTTTAAGAGAACTAGTCCGTCGTTTTCTGAGAGATCTCCCAGTACCTTCTTCCTTTCCAGAATGCCGTCTATTTGGACTCTCCAAGTAGAGCAAGGTCGACTACTTATGAAAATAGGATGTTACAAAAGTGCTCTGGTCATTTTTCTGTTACGGGACAAGTGGTCTGAAATAATCGAATGCTATATCCACCTAAATAAGAGAGAAAAAGCAGAAGAAGTGATTCGTTCTCGTCTAAATTCTGGAGATGAATCTGCTGAATTATATTGTTCTCTTGGAGATGTGACANATGATCGCCAACACTATTTAAAGGCTTGNGATGTAT]
[+] EMBL CD156906             [ATATAACAGAACAGCAGTGTTTAGCTTACATCAATACCGTTATCCGGGCTATTTACCCGGATTCTGAAAATGAAATAAAAAGTAGTTCTTCTTGGCCTATTGCCACAGAAACATTGTTTAGAAGAAGTTTACTGGAACATAATTCTGTTAGAAGAACTGAGCGTGCATTATCTCAGTTAGAGGAGTTAAGCTGTCAGTCTAAGAGAACTAGTCCGTCGTTTTCTGAGAGATCTCCCAGTACCTTCTTCCTTTCCAGAATGCCGTCTATTTGGACTCTCCAAGTTGAGCAAGGTCGACTACTTATGAAAATAGGATGTTACAAAAGTGCTCTGGACATTTTTCTGTTATGGGACAAGTGGTCTGAAATAATCGAATGCTATATCCACCTAAATAAGAGAGAAAAAGCAGAAGAAGTGATTCGTTCTCGTCTAAATTCTGGAGATGAATCTGCTGAATTATATTGTTCTCTTGGAGATGTGACAAATGATCGCCAACACTATTTAAAGGCTTGNGATGTAT]




>consensus_8679#1
ATATAACAGAACAGCAGTGTTTAGCTTACATCAATACCGTTATCCGGGCTATTTACCCGG
ATTCTGAAAATGAAATAAAAAGTAGTTCTTCTTGGCCTATTGCCACAGAAACATTGTTTA
GAAGAAGTTTACTGGAACATAATTCTGTTAGAAGAACTGAGCGTGCATTATCTCAGTTAG
AGGAGTTAAGCTGTCAGTTTAAGAGAACTAGTCCGTCGTTTTCTGAGAGATCTCCCAGTA
CCTTCTTCCTTTCCAGAATGCCGTCTATTTGGACTCTCCAAGTAGAGCAAGGTCGACTAC
TTATGAAAATAGGATGTTACAAAAGTGCTCTGGTCATTTTTCTGTTACGGGACAAGTGGT
CTGAAATAATCGAATGCTATATCCACCTAAATAAGAGAGAAAAAGCAGAAGAAGTGATTC
GTTCTCGTCTAAATTCTGGAGATGAATCTGCTGAATTATATTGTTCTCTTGGAGATGTGA
CANATGATCGCCAACACTATTTAAAGGCTTGNGATGTAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8679#0      GCTCGGTACCCCAGGTGGAAATAGGATGTTACAAAAGTGCTCTGGACATTTTTCTGTTAT 60
consensus_8679#1      ------------------------------------------------------------
                                                                                  

consensus_8679#0      GGGACAAGTGGTCTGAAATAATCGAATGCTATATCCACCTAAATAAGAGAGAAAAAGCAG 120
consensus_8679#1      ------------------------------------------------------------
                                                                                  

consensus_8679#0      AAGAAGTGATTCGTTCTCGTCTAAATTCTGGAGATGAATCTGCTGAATTATATTGTTCTC 180
consensus_8679#1      ------------------------------------------------------------
                                                                                  

consensus_8679#0      TTGGAGATGTGACAAATGATCGCCAACACTATTTAAAGGCTTGGGATGTATCTGGTTGTA 240
consensus_8679#1      ---------------------------------------------ATATAACAGAACAGC 15
                                                                   ** ** * *      

consensus_8679#0      AGTCGGCTCGAGCAATACGCAGCTTAGCTGTTACATATATGTACACAGATAAAGACTATC 300
consensus_8679#1      AGT--GTTTAGCTTACAT-CAATACCGTTATCCGGGCTATTTACCCGGATTCTGAAAATG 72
                      ***  * *      * *  **     * * *      *** *** * ***   **  ** 

consensus_8679#0      AAAAAGCAATTGAATGTT-TTGAAAAATCACTAGAAATTAACACTTTGCAAGTTAATGTA 359
consensus_8679#1      AAATAAAAAGTAGTTCTTCTTGGCCTATTGCCACAGA--AACATT------GTTTAGAAG 124
                      *** *  ** *   * ** ***    **  * * * *  **** *      *** *    

consensus_8679#0      TGGTTTACATTTGGATGTTGTTGTCTTCAAGCCAAGGAGTTTGTAAAAGCTGAAAATGCT 419
consensus_8679#1      AAGTTTAC--TGGAACATAATTCTGTTAGAAGAACTGAGCGTGCATTATCTCAGTTAGAG 182
                        ******  * * *  *  ** * **  *   *  ***  ** *  * ** *    *  

consensus_8679#0      TTTCGTTCATGCGTTCGTTTAGATCCAGATAATTTTGAAGCGTGGAATAATTGTGCTACT 479
consensus_8679#1      G--AGTTAAGCTGTCAGTTTAAGAG-AACTAGTCCGTCGTTTTCTGAGAGATCTCCCAGT 239
                          *** *   **  *****     *  ** *         *   * *  * * * * *

consensus_8679#0      GCTGTCCTGATTCAAGGAAAAAAGAATATAGCATTAAAACTAATGAAAGAAGCGTGTAAA 539
consensus_8679#1      ACCTTCTTCCTTTCCAGAATGCCGTCTAT----TTGGACTCTCCAAGTAGAGCAAGGTCG 295
                       *  ** *  **    ***    *  ***    **  *       *    ***  *    

consensus_8679#0      TATAGTTATGAAAACTGGCGCATATGGGAAAATATTCTGTTGATTAGTGC-TGATGTAAA 598
consensus_8679#1      ACTACTTATGAAAATAGGATGTTACA--AAAGTGCTCTGGTCATTTTTCTGTTACGGGAC 353
                        ** *********  **    **    *** *  **** * ***  *   * * *  * 

consensus_8679#0      AGCTTTTCATGAAACTATATATGCCTATCATCGCCTATTAGATTTACAAGGAAAGTATGC 658
consensus_8679#1      AAGTGGTC-TGAAATAATCGAATGCTATATCCACCTA--AATAAGAGAGAAAAAGCAGAA 410
                      *  *  ** *****  **  *   ****   * ****  *     * *   **** *   

consensus_8679#0      ANATCTACAAGTCCTCAGTGTTATGGTTAAAGGTGT-TATTTTAAATGAAATGGATTCTA 717
consensus_8679#1      GAAGTGATTCGTTCTC-GTCTAAATTCTGGAGATGAATCTGCTGAATTATATTG-TTCTC 468
                        *   *   ** *** ** * *    *  ** **  * *  * *** * ** * **** 

consensus_8679#0      CAGGAAACCCTGCAAGTAATTTACGTGCCAA-GCTACTTGAATTGTTTGGTCGAGTTACA 776
consensus_8679#1      TTGGAGATGTGACANATGATC-----GCCAACACTATTTAAAGGCTTGNGATGTAT---- 519
                        *** *     **  * **      *****  *** ** **   **  *  *  *    

consensus_8679#0      GCATCGACTCCTAACGACGCTGTTATATGGAATGAATATGCACATCTTTTGGTTGATGAA 836
consensus_8679#1      ------------------------------------------------------------
                                                                                  

consensus_8679#0      CTTCCTCAAACGACTTATACTACATATCAACGTGCTGTCCACTGTCTTCAAGCAGCTCAT 896
consensus_8679#1      ------------------------------------------------------------
                                                                                  

consensus_8679#0      CGTTGTCGTATACAATCAAGTGAAGGACCATGGGAACAATCAACAAAAAAATGTGAAACT 956
consensus_8679#1      ------------------------------------------------------------
                                                                                  

consensus_8679#0      ATTATTGATGGTTTAAAAGCTTTACTTGATTTATTAAATAATCCTCCTAAATTAAAAAAT 1016
consensus_8679#1      ------------------------------------------------------------
                                                                                  

consensus_8679#0      GATGATAATGAATCGAATGAAGAAGATCAACTTAATACTTTCATTCAATCAGCCTTGGCC 1076
consensus_8679#1      ------------------------------------------------------------
                                                                                  

consensus_8679#0      ACTCTACGAATAAGCATAAAATCTGTAATTTCCAAAATGAAGATTGCTGAAGAATCTATT 1136
consensus_8679#1      ------------------------------------------------------------
                                                                                  

consensus_8679#0      CTTTCAACCGATGTTCAAGATATGATTCATTCCTCAGTTAAAGATTTAAATGAATTATTA 1196
consensus_8679#1      ------------------------------------------------------------
                                                                                  

consensus_8679#0      ATTGATGTTGAAAGAAAATTAAACTAAACTCTTACGTTGTATATGCTTTTTTTATCGACT 1256
consensus_8679#1      ------------------------------------------------------------
                                                                                  

consensus_8679#0      ATCGTAATATCAATAAAAG 1275
consensus_8679#1      -------------------