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Schistosoma mansoni
cluster # 8690 cluster # 8690       Sequences # 7       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8690#0 length = 826 sequences # 4  
consensus_8690#1 length = 466 sequences # 3  

consensusID : consensus_8690#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 826
fasta sequence
                              [GGCCAGAAATGGCACGAGGTCCACGCGTGATTTTCCAGTGCGCATCACTTTTTGCTTACCTATATTTGTTTCCATATTTAGTGGTTTTTTCGAAGTAAAATTGACAGACGTATCGAATATGCCGAATAGTCTGCTAAAAAGTTCCAGTCGTCTAATGTTATGTTTAGATACAATGTGTCAAACTGTTGGTACAGTAATCATGCCCGCTGTTCCTTGCTTGTTAACTCTTCTCACATACCACTTAGAATGGACTGCGAGCTGGCGACTTGAAAGTAAAAATATGGAGTATTTTGTGCGTCTGCGTTTGGCAGCTCTTTCTTGCTTACTCCATCTTACCACCGCGAGTTTAAAGTTTTCGTACGCATATTTTATAGAAATGATACCACGAATATTTTCACAGTTGATTTATGATTTACGAGGATTTCTTTCTACTTGTCAATATACATATCCAA-TCACATCCGCCAATGCTGTTTTCAATAGTGACCATCCGAAACCTCAAGTTGATTCGCCCGGAATGTTTGAGAAGCGTATGCTGTTGGCGATCCTGCTCCTGATAGAATATATTTTTAAAGATCCAGGGGTTCTGCGCTATGTGGAACTCTCCAAAGCAATAGACTCGAGTTGCACGACTAGTAAAGAAAATCCCTCCAGTCATACGCCTGTTTATAACGAAGTGAATAGTCTTTTGAACTGTATAGTCAGCTTACTCTCACATATAAATGTTATTCTTAGCTATGGAGTGTCTCATACTCAGCGGCAGGAAAAGACCGGTTTTACGGATTTGGTCAGTCCACCTCTGTTAATTGCTTTAGCAAAAGCTTCCTTT]

[+] EMBL CD081449             [GGCCAGAAATGGCACGAGGTCCACGCGTGATTTTCCAGTGCGCATCACTTTTTGCTTACCTATATTTGTTTCCATATTTAGTGGTTTTTTCGAAGTAAAATTGACAGACGTATCGAATATGCCGAATAGTCTGCTAAAAAGTTCCAGTCGTCTAATGTTATGTTTAGATACAATGTGTCAAACTGTTGGTACAGTAATCATGCCCGCTGTTCCTTGCTTGTTAACTCTTCTCACATACCACTTAGAATGGACTGCGAGCTGGCGACTTGAAAGTAAAAATATGGAGTATTTTGTGCGTCTGCGTTTGGCAGCTCTTTCTTGCTTACTCCATCTTACCACCGCGAGTTTAAAGTTTTCGTACGCATATTTTATAGAAATGATACCACGAATATTTTCACAGTTGATTTATGATTTACGAGGATTTCTTTCTACTTGTCAATATACATATCCAA TCACATCCGCCAATGCTGTTTTCAATAGTGACCATCCGAAACCTCAAGTTGATTCGCCCGGAATGTTTGAGAAGCGTATGCTGTTGGCGATCCTGCTCCTGATAGAATATATTTTTAAAGATCCAGGGGTTCTGCGCTATGTGGAACTCTCCAAAGC ATAGACTCGAGTTGCACGACTAGTAAAGAAAATCCCTCCAGTCATACGCCTGTT                                                                                                                                                                  ]
[+] EMBL CD083335             [                                                                                                                                                                                                                                                          gagGCGAGCTGGCGACTTGAAAGTAAAAATATGGAGTATTTTGTGCGTCTGCGTTTGGCAGCTCTTTCTTGCTTACTCCATCTTACCACCGCGAGTTTAAAGTTTTCGTACGCATATTTTATAGAAATGATACCACGAATATTTTCACAGTTGATTTATGATTTACGAGGATTTCTTTCTACTTGTCAATATACATTTCCAATTCACATCCGCCAATGCTGTTTTCAATAGTGACCATCC                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CD152784             [                                                                                                                                                                                                                                                                                                                                                                                                                                                             TATCCAA TCACATCCGCCAATGCTGTTTTCAATAGTGACCATCCGAAACCTCAAGTTGATTCGCCCGGAATGTTTGAGAAGCGTATGCTGTTGGCGATCCTGCTCCTGATAGAATATATTTTTAAAGATCCAGGGGTTCTGCGCTATGTGGAACTCTCCAAAGCAATAGACTCGAGTTGCACGACTAGTATAGAAAATCCCTCCAGTCATACGCCTGTTTATAACGAAGTGAATAGTCTTTTGAACTGTATAGTCAGCTTACTCTCACATATAAATGTTATTCTTAGCTATGGAGTGTCTCATACTCAGCGGCAGGAAAAGACCGGTTTTACGGATTTGG                                         ]
[-] EMBL CD154608             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ATAGAATATATTTTTAAAGATCCAGGGGTTCTGCGCTATGTGGAACTCTCCAAAGCAATAGACTCGAGTTGCACGACTAGTAAAGAAAATCCCTCCAGTCATACGCCTGTTCATAACGAAGTGAATAGTCTTTTGAACTGTATAGTCAGCTTACTCTCACATATAAATGTTATTCTTAGCTATGGAGTGTCTCATACTCAGCGGCAGGAAAAGACCGGTTTTACGGATTTGGTCAGTCCACCTCTGTTAATTGCTTTAGCAAAAGCTTCCTTT]


>consensus_8690#0 GGCCAGAAATGGCACGAGGTCCACGCGTGATTTTCCAGTGCGCATCACTTTTTGCTTACC TATATTTGTTTCCATATTTAGTGGTTTTTTCGAAGTAAAATTGACAGACGTATCGAATAT GCCGAATAGTCTGCTAAAAAGTTCCAGTCGTCTAATGTTATGTTTAGATACAATGTGTCA AACTGTTGGTACAGTAATCATGCCCGCTGTTCCTTGCTTGTTAACTCTTCTCACATACCA CTTAGAATGGACTGCGAGCTGGCGACTTGAAAGTAAAAATATGGAGTATTTTGTGCGTCT GCGTTTGGCAGCTCTTTCTTGCTTACTCCATCTTACCACCGCGAGTTTAAAGTTTTCGTA CGCATATTTTATAGAAATGATACCACGAATATTTTCACAGTTGATTTATGATTTACGAGG ATTTCTTTCTACTTGTCAATATACATATCCAATCACATCCGCCAATGCTGTTTTCAATAG TGACCATCCGAAACCTCAAGTTGATTCGCCCGGAATGTTTGAGAAGCGTATGCTGTTGGC GATCCTGCTCCTGATAGAATATATTTTTAAAGATCCAGGGGTTCTGCGCTATGTGGAACT CTCCAAAGCAATAGACTCGAGTTGCACGACTAGTAAAGAAAATCCCTCCAGTCATACGCC TGTTTATAACGAAGTGAATAGTCTTTTGAACTGTATAGTCAGCTTACTCTCACATATAAA TGTTATTCTTAGCTATGGAGTGTCTCATACTCAGCGGCAGGAAAAGACCGGTTTTACGGA TTTGGTCAGTCCACCTCTGTTAATTGCTTTAGCAAAAGCTTCCTTT



consensusID : consensus_8690#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 466
fasta sequence
                              [ACGA-GCG-TCAAACGTATTTAAATTCGAAGGTAGACGATTTTTCATGTATTATTCCGGTAGACAAGATAAAAAAGCTACCTGACGACTTCTCCAAGTTGCTGATTATGCGTGTTGATTTTTTCACCTATTGCTTACGTTATATCTTCACGCGTGATTTTCCAGTGCGCATCACTTTTTGCTTACCTATATTTGTTTCCATATTTAGTGGTTTTTTCGAAGTAAAATTGACAGACGTATCGAATATGCCGAATAGTCTGCTAAAAAGTTCCAGTCGTCTAATGTTATGTTTAGATACAATGTGTCAAACTGTTGGTACAGTAATCATGCCCGCTGTTCCTTGCTTGTTAACTCTTCTCACATACCACTTAGAATGGACTGCGAGCTGGC-GACTTGAAA-GTAAAAATATGGAGTATTT-TGTGCGTCTGCGTTTGGCAGCTCTTTCT----GT-CTCCATCTACCACCGCGAGTT]

[+] EMBL CD084110             [ACGAGGCG TCAAACGTATTTAAATTCGAAGGTAGACGATTTTTCATGTATTATTCCGGTAGACAAGATAAAAAAGCTACCTGACGACTTCTCCAAGTTGCTGATTATGCGTGTTGATTTTTTCACCTATTGCTTACGTTATATCTTCACGCGTGATTTTCCAGTGCGCATCACTTTTTGCTTACCTATATTTGTTTCCATATTTAGTGGTTTTTTCGAAGTAAAATTGACAGACGTATCGAATATGCCGAATAGTCTGCTAAAAAGTTCCAGTCGTCTAATGTTATGTTTAGATACAATGTGTCAAACTGTTGGTACAGTAATCATGCCCGCTGTTCCTTGCTTGTTAACTCTTCTCACATACCACTTAGAATGGACTGCGA                                                                                             ]
[-] EMBL CD065474             [ CGA CCGTTCAAACGTATTTAAATTCGAAGGTAGACGATTTTACATGTATTATTCCGGTAGACAAGATAAAAAAGCTACCTGACGACTTCTCCAAGTTGCTGATTATGCGTGTTGATTTTTTCACCTATTGCTTACGTTATATCTTCACGCGTGATTTTCCAGTGCGCATCACTTTTTGCTTACCTATATTTGTTTCCATATTTAGTGGTTTTTTCGAAGTAAAATTGACAGACGTATCGAATATGCCGAATAGTCTGCTAAAAAGTTCCAGTCGTCTAATGTTATGTTTAGATACAATGTGTCAAACTGTTGGTACAGTAATCATGCCCGCTGTTCCTTGCTTGTTAACTCTTCTCACATACCACTTAGAATGGACTGCGAGCTGGC GACTTGAAA GTAAAAATATGGAGTATTT TGTGCGTCTGCGTTTGGCAGCTCTTTCT    GT CTCCATCTACCACCGCGAGTT]
[-] EMBL CD065701             [          CAGACGTATTTAAATTCGAAGATAGACGATTTTTCATGTATTATTCCGGTAGACAAGATACAAAAGCTACCTGACGACCTCTCCAAGTTGCTGATTATGCGTGTTGATTTTTTCACCTATTGCTTACCTTATATCTTCACGCGTGATTTTCCAGTGCGCATCACTTTTTGCTTACCTATATTTGTTTCCATATTTAGTGGTTTTTTCGGAGTAAAATTGACAGACGTATCGAATATGCCGAATAGTCTGCTAAGAAGTTCCAGTTGTCTAATGTTATGTTTAGATACAATGTGTCAAACTGTTGGTACAGTAATCATGCCCGCTGTTCCTTGCTTGTTAACTCTTCTCACATACCACTTAGAATGGACTGCGAGCTGTCGGACTTGAAATGTATAAATATGGAGTATTTCTGTGCGTCCGCG TTGGCAGCTCTTTCTTCGCGTACTCCATCTACCc         ]


>consensus_8690#1 ACGAGCGTCAAACGTATTTAAATTCGAAGGTAGACGATTTTTCATGTATTATTCCGGTAG ACAAGATAAAAAAGCTACCTGACGACTTCTCCAAGTTGCTGATTATGCGTGTTGATTTTT TCACCTATTGCTTACGTTATATCTTCACGCGTGATTTTCCAGTGCGCATCACTTTTTGCT TACCTATATTTGTTTCCATATTTAGTGGTTTTTTCGAAGTAAAATTGACAGACGTATCGA ATATGCCGAATAGTCTGCTAAAAAGTTCCAGTCGTCTAATGTTATGTTTAGATACAATGT GTCAAACTGTTGGTACAGTAATCATGCCCGCTGTTCCTTGCTTGTTAACTCTTCTCACAT ACCACTTAGAATGGACTGCGAGCTGGCGACTTGAAAGTAAAAATATGGAGTATTTTGTGC GTCTGCGTTTGGCAGCTCTTTCTGTCTCCATCTACCACCGCGAGTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8690#0      ------------------------------------------------------------
consensus_8690#1      ACGAGCGTCAAACGTATTTAAATTCGAAGGTAGACGATTTTTCATGTATTATTCCGGTAG 60
                                                                                  

consensus_8690#0      ------------------------------------------------------------
consensus_8690#1      ACAAGATAAAAAAGCTACCTGACGACTTCTCCAAGTTGCTGATTATGCGTGTTGATTTTT 120
                                                                                  

consensus_8690#0      --GGCCAGAAATGGCACGAGGTC--CACGCGTGATTTTCCAGTGCGCATCACTTTTTGCT 56
consensus_8690#1      TCACCTATTGCTTACGTTATATCTTCACGCGTGATTTTCCAGTGCGCATCACTTTTTGCT 180
                          * *    *  *   *  **  ***********************************

consensus_8690#0      TACCTATATTTGTTTCCATATTTAGTGGTTTTTTCGAAGTAAAATTGACAGACGTATCGA 116
consensus_8690#1      TACCTATATTTGTTTCCATATTTAGTGGTTTTTTCGAAGTAAAATTGACAGACGTATCGA 240
                      ************************************************************

consensus_8690#0      ATATGCCGAATAGTCTGCTAAAAAGTTCCAGTCGTCTAATGTTATGTTTAGATACAATGT 176
consensus_8690#1      ATATGCCGAATAGTCTGCTAAAAAGTTCCAGTCGTCTAATGTTATGTTTAGATACAATGT 300
                      ************************************************************

consensus_8690#0      GTCAAACTGTTGGTACAGTAATCATGCCCGCTGTTCCTTGCTTGTTAACTCTTCTCACAT 236
consensus_8690#1      GTCAAACTGTTGGTACAGTAATCATGCCCGCTGTTCCTTGCTTGTTAACTCTTCTCACAT 360
                      ************************************************************

consensus_8690#0      ACCACTTAGAATGGACTGCGAGCTGGCGACTTGAAAGTAAAAATATGGAGTATTTTGTGC 296
consensus_8690#1      ACCACTTAGAATGGACTGCGAGCTGGCGACTTGAAAGTAAAAATATGGAGTATTTTGTGC 420
                      ************************************************************

consensus_8690#0      GTCTGCGTTTGGCAGCTCTTTCTTGCTTACTCCATCTTACCACCGCGAGTTTAAAGTTTT 356
consensus_8690#1      GTCTGCGTTTGGCAGCTCTTTCTGTCT----CCATCT-ACCACCGCGAGTT--------- 466
                      ***********************  **    ****** *************         

consensus_8690#0      CGTACGCATATTTTATAGAAATGATACCACGAATATTTTCACAGTTGATTTATGATTTAC 416
consensus_8690#1      ------------------------------------------------------------
                                                                                  

consensus_8690#0      GAGGATTTCTTTCTACTTGTCAATATACATATCCAATCACATCCGCCAATGCTGTTTTCA 476
consensus_8690#1      ------------------------------------------------------------
                                                                                  

consensus_8690#0      ATAGTGACCATCCGAAACCTCAAGTTGATTCGCCCGGAATGTTTGAGAAGCGTATGCTGT 536
consensus_8690#1      ------------------------------------------------------------
                                                                                  

consensus_8690#0      TGGCGATCCTGCTCCTGATAGAATATATTTTTAAAGATCCAGGGGTTCTGCGCTATGTGG 596
consensus_8690#1      ------------------------------------------------------------
                                                                                  

consensus_8690#0      AACTCTCCAAAGCAATAGACTCGAGTTGCACGACTAGTAAAGAAAATCCCTCCAGTCATA 656
consensus_8690#1      ------------------------------------------------------------
                                                                                  

consensus_8690#0      CGCCTGTTTATAACGAAGTGAATAGTCTTTTGAACTGTATAGTCAGCTTACTCTCACATA 716
consensus_8690#1      ------------------------------------------------------------
                                                                                  

consensus_8690#0      TAAATGTTATTCTTAGCTATGGAGTGTCTCATACTCAGCGGCAGGAAAAGACCGGTTTTA 776
consensus_8690#1      ------------------------------------------------------------
                                                                                  

consensus_8690#0      CGGATTTGGTCAGTCCACCTCTGTTAATTGCTTTAGCAAAAGCTTCCTTT 826
consensus_8690#1      --------------------------------------------------
                                                                        




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)