These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8690#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 826 fasta sequence [GGCCAGAAATGGCACGAGGTCCACGCGTGATTTTCCAGTGCGCATCACTTTTTGCTTACCTATATTTGTTTCCATATTTAGTGGTTTTTTCGAAGTAAAATTGACAGACGTATCGAATATGCCGAATAGTCTGCTAAAAAGTTCCAGTCGTCTAATGTTATGTTTAGATACAATGTGTCAAACTGTTGGTACAGTAATCATGCCCGCTGTTCCTTGCTTGTTAACTCTTCTCACATACCACTTAGAATGGACTGCGAGCTGGCGACTTGAAAGTAAAAATATGGAGTATTTTGTGCGTCTGCGTTTGGCAGCTCTTTCTTGCTTACTCCATCTTACCACCGCGAGTTTAAAGTTTTCGTACGCATATTTTATAGAAATGATACCACGAATATTTTCACAGTTGATTTATGATTTACGAGGATTTCTTTCTACTTGTCAATATACATATCCAA-TCACATCCGCCAATGCTGTTTTCAATAGTGACCATCCGAAACCTCAAGTTGATTCGCCCGGAATGTTTGAGAAGCGTATGCTGTTGGCGATCCTGCTCCTGATAGAATATATTTTTAAAGATCCAGGGGTTCTGCGCTATGTGGAACTCTCCAAAGCAATAGACTCGAGTTGCACGACTAGTAAAGAAAATCCCTCCAGTCATACGCCTGTTTATAACGAAGTGAATAGTCTTTTGAACTGTATAGTCAGCTTACTCTCACATATAAATGTTATTCTTAGCTATGGAGTGTCTCATACTCAGCGGCAGGAAAAGACCGGTTTTACGGATTTGGTCAGTCCACCTCTGTTAATTGCTTTAGCAAAAGCTTCCTTT] [+] EMBL CD081449 [GGCCAGAAATGGCACGAGGTCCACGCGTGATTTTCCAGTGCGCATCACTTTTTGCTTACCTATATTTGTTTCCATATTTAGTGGTTTTTTCGAAGTAAAATTGACAGACGTATCGAATATGCCGAATAGTCTGCTAAAAAGTTCCAGTCGTCTAATGTTATGTTTAGATACAATGTGTCAAACTGTTGGTACAGTAATCATGCCCGCTGTTCCTTGCTTGTTAACTCTTCTCACATACCACTTAGAATGGACTGCGAGCTGGCGACTTGAAAGTAAAAATATGGAGTATTTTGTGCGTCTGCGTTTGGCAGCTCTTTCTTGCTTACTCCATCTTACCACCGCGAGTTTAAAGTTTTCGTACGCATATTTTATAGAAATGATACCACGAATATTTTCACAGTTGATTTATGATTTACGAGGATTTCTTTCTACTTGTCAATATACATATCCAA TCACATCCGCCAATGCTGTTTTCAATAGTGACCATCCGAAACCTCAAGTTGATTCGCCCGGAATGTTTGAGAAGCGTATGCTGTTGGCGATCCTGCTCCTGATAGAATATATTTTTAAAGATCCAGGGGTTCTGCGCTATGTGGAACTCTCCAAAGC ATAGACTCGAGTTGCACGACTAGTAAAGAAAATCCCTCCAGTCATACGCCTGTT ] [+] EMBL CD083335 [ gagGCGAGCTGGCGACTTGAAAGTAAAAATATGGAGTATTTTGTGCGTCTGCGTTTGGCAGCTCTTTCTTGCTTACTCCATCTTACCACCGCGAGTTTAAAGTTTTCGTACGCATATTTTATAGAAATGATACCACGAATATTTTCACAGTTGATTTATGATTTACGAGGATTTCTTTCTACTTGTCAATATACATTTCCAATTCACATCCGCCAATGCTGTTTTCAATAGTGACCATCC ] [-] EMBL CD152784 [ TATCCAA TCACATCCGCCAATGCTGTTTTCAATAGTGACCATCCGAAACCTCAAGTTGATTCGCCCGGAATGTTTGAGAAGCGTATGCTGTTGGCGATCCTGCTCCTGATAGAATATATTTTTAAAGATCCAGGGGTTCTGCGCTATGTGGAACTCTCCAAAGCAATAGACTCGAGTTGCACGACTAGTATAGAAAATCCCTCCAGTCATACGCCTGTTTATAACGAAGTGAATAGTCTTTTGAACTGTATAGTCAGCTTACTCTCACATATAAATGTTATTCTTAGCTATGGAGTGTCTCATACTCAGCGGCAGGAAAAGACCGGTTTTACGGATTTGG ] [-] EMBL CD154608 [ ATAGAATATATTTTTAAAGATCCAGGGGTTCTGCGCTATGTGGAACTCTCCAAAGCAATAGACTCGAGTTGCACGACTAGTAAAGAAAATCCCTCCAGTCATACGCCTGTTCATAACGAAGTGAATAGTCTTTTGAACTGTATAGTCAGCTTACTCTCACATATAAATGTTATTCTTAGCTATGGAGTGTCTCATACTCAGCGGCAGGAAAAGACCGGTTTTACGGATTTGGTCAGTCCACCTCTGTTAATTGCTTTAGCAAAAGCTTCCTTT] consensusID : consensus_8690#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 466 fasta sequence [ACGA-GCG-TCAAACGTATTTAAATTCGAAGGTAGACGATTTTTCATGTATTATTCCGGTAGACAAGATAAAAAAGCTACCTGACGACTTCTCCAAGTTGCTGATTATGCGTGTTGATTTTTTCACCTATTGCTTACGTTATATCTTCACGCGTGATTTTCCAGTGCGCATCACTTTTTGCTTACCTATATTTGTTTCCATATTTAGTGGTTTTTTCGAAGTAAAATTGACAGACGTATCGAATATGCCGAATAGTCTGCTAAAAAGTTCCAGTCGTCTAATGTTATGTTTAGATACAATGTGTCAAACTGTTGGTACAGTAATCATGCCCGCTGTTCCTTGCTTGTTAACTCTTCTCACATACCACTTAGAATGGACTGCGAGCTGGC-GACTTGAAA-GTAAAAATATGGAGTATTT-TGTGCGTCTGCGTTTGGCAGCTCTTTCT----GT-CTCCATCTACCACCGCGAGTT] [+] EMBL CD084110 [ACGAGGCG TCAAACGTATTTAAATTCGAAGGTAGACGATTTTTCATGTATTATTCCGGTAGACAAGATAAAAAAGCTACCTGACGACTTCTCCAAGTTGCTGATTATGCGTGTTGATTTTTTCACCTATTGCTTACGTTATATCTTCACGCGTGATTTTCCAGTGCGCATCACTTTTTGCTTACCTATATTTGTTTCCATATTTAGTGGTTTTTTCGAAGTAAAATTGACAGACGTATCGAATATGCCGAATAGTCTGCTAAAAAGTTCCAGTCGTCTAATGTTATGTTTAGATACAATGTGTCAAACTGTTGGTACAGTAATCATGCCCGCTGTTCCTTGCTTGTTAACTCTTCTCACATACCACTTAGAATGGACTGCGA ] [-] EMBL CD065474 [ CGA CCGTTCAAACGTATTTAAATTCGAAGGTAGACGATTTTACATGTATTATTCCGGTAGACAAGATAAAAAAGCTACCTGACGACTTCTCCAAGTTGCTGATTATGCGTGTTGATTTTTTCACCTATTGCTTACGTTATATCTTCACGCGTGATTTTCCAGTGCGCATCACTTTTTGCTTACCTATATTTGTTTCCATATTTAGTGGTTTTTTCGAAGTAAAATTGACAGACGTATCGAATATGCCGAATAGTCTGCTAAAAAGTTCCAGTCGTCTAATGTTATGTTTAGATACAATGTGTCAAACTGTTGGTACAGTAATCATGCCCGCTGTTCCTTGCTTGTTAACTCTTCTCACATACCACTTAGAATGGACTGCGAGCTGGC GACTTGAAA GTAAAAATATGGAGTATTT TGTGCGTCTGCGTTTGGCAGCTCTTTCT GT CTCCATCTACCACCGCGAGTT] [-] EMBL CD065701 [ CAGACGTATTTAAATTCGAAGATAGACGATTTTTCATGTATTATTCCGGTAGACAAGATACAAAAGCTACCTGACGACCTCTCCAAGTTGCTGATTATGCGTGTTGATTTTTTCACCTATTGCTTACCTTATATCTTCACGCGTGATTTTCCAGTGCGCATCACTTTTTGCTTACCTATATTTGTTTCCATATTTAGTGGTTTTTTCGGAGTAAAATTGACAGACGTATCGAATATGCCGAATAGTCTGCTAAGAAGTTCCAGTTGTCTAATGTTATGTTTAGATACAATGTGTCAAACTGTTGGTACAGTAATCATGCCCGCTGTTCCTTGCTTGTTAACTCTTCTCACATACCACTTAGAATGGACTGCGAGCTGTCGGACTTGAAATGTATAAATATGGAGTATTTCTGTGCGTCCGCG TTGGCAGCTCTTTCTTCGCGTACTCCATCTACCc ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8690#0 ------------------------------------------------------------ consensus_8690#1 ACGAGCGTCAAACGTATTTAAATTCGAAGGTAGACGATTTTTCATGTATTATTCCGGTAG 60 consensus_8690#0 ------------------------------------------------------------ consensus_8690#1 ACAAGATAAAAAAGCTACCTGACGACTTCTCCAAGTTGCTGATTATGCGTGTTGATTTTT 120 consensus_8690#0 --GGCCAGAAATGGCACGAGGTC--CACGCGTGATTTTCCAGTGCGCATCACTTTTTGCT 56 consensus_8690#1 TCACCTATTGCTTACGTTATATCTTCACGCGTGATTTTCCAGTGCGCATCACTTTTTGCT 180 * * * * * ** *********************************** consensus_8690#0 TACCTATATTTGTTTCCATATTTAGTGGTTTTTTCGAAGTAAAATTGACAGACGTATCGA 116 consensus_8690#1 TACCTATATTTGTTTCCATATTTAGTGGTTTTTTCGAAGTAAAATTGACAGACGTATCGA 240 ************************************************************ consensus_8690#0 ATATGCCGAATAGTCTGCTAAAAAGTTCCAGTCGTCTAATGTTATGTTTAGATACAATGT 176 consensus_8690#1 ATATGCCGAATAGTCTGCTAAAAAGTTCCAGTCGTCTAATGTTATGTTTAGATACAATGT 300 ************************************************************ consensus_8690#0 GTCAAACTGTTGGTACAGTAATCATGCCCGCTGTTCCTTGCTTGTTAACTCTTCTCACAT 236 consensus_8690#1 GTCAAACTGTTGGTACAGTAATCATGCCCGCTGTTCCTTGCTTGTTAACTCTTCTCACAT 360 ************************************************************ consensus_8690#0 ACCACTTAGAATGGACTGCGAGCTGGCGACTTGAAAGTAAAAATATGGAGTATTTTGTGC 296 consensus_8690#1 ACCACTTAGAATGGACTGCGAGCTGGCGACTTGAAAGTAAAAATATGGAGTATTTTGTGC 420 ************************************************************ consensus_8690#0 GTCTGCGTTTGGCAGCTCTTTCTTGCTTACTCCATCTTACCACCGCGAGTTTAAAGTTTT 356 consensus_8690#1 GTCTGCGTTTGGCAGCTCTTTCTGTCT----CCATCT-ACCACCGCGAGTT--------- 466 *********************** ** ****** ************* consensus_8690#0 CGTACGCATATTTTATAGAAATGATACCACGAATATTTTCACAGTTGATTTATGATTTAC 416 consensus_8690#1 ------------------------------------------------------------ consensus_8690#0 GAGGATTTCTTTCTACTTGTCAATATACATATCCAATCACATCCGCCAATGCTGTTTTCA 476 consensus_8690#1 ------------------------------------------------------------ consensus_8690#0 ATAGTGACCATCCGAAACCTCAAGTTGATTCGCCCGGAATGTTTGAGAAGCGTATGCTGT 536 consensus_8690#1 ------------------------------------------------------------ consensus_8690#0 TGGCGATCCTGCTCCTGATAGAATATATTTTTAAAGATCCAGGGGTTCTGCGCTATGTGG 596 consensus_8690#1 ------------------------------------------------------------ consensus_8690#0 AACTCTCCAAAGCAATAGACTCGAGTTGCACGACTAGTAAAGAAAATCCCTCCAGTCATA 656 consensus_8690#1 ------------------------------------------------------------ consensus_8690#0 CGCCTGTTTATAACGAAGTGAATAGTCTTTTGAACTGTATAGTCAGCTTACTCTCACATA 716 consensus_8690#1 ------------------------------------------------------------ consensus_8690#0 TAAATGTTATTCTTAGCTATGGAGTGTCTCATACTCAGCGGCAGGAAAAGACCGGTTTTA 776 consensus_8690#1 ------------------------------------------------------------ consensus_8690#0 CGGATTTGGTCAGTCCACCTCTGTTAATTGCTTTAGCAAAAGCTTCCTTT 826 consensus_8690#1 -------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||