cluster # 8692

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Schistosoma mansoni
cluster # 8692 cluster # 8692 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8692#0 length = 632 sequences # 1

consensus_8692#1 length = 496 sequences # 6

consensusID : consensus_8692#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 632
fasta sequence

                              [ACTGTTAAGACCTTTATGTTAAAGTCTCACTGTATATACTTCAGTTCGAACATCTGAGTAGTGTCACTAGTCTTCATATACAAGTAGTGTGGATGACAGCTAAATTCACAAACTTTCATTAGTGAATTAGATTCTCCAACAATATTCAATTAGTCATCTTTCGTGAGGTGCTTTTAGATATCTTTTACCTTAAAACACCAGACTTTTTATTCCCATCTTACTGAAATAACACACATATGACCTTTTCGTTGTACGTCTGACTGTTTATATATACTGAGAATGAGAAAGCTTTTGCGCGTAGAGAAGACAGATCGATACTTGAGAAAATTCAAGCCATGAAGAATTCAAGTCTGTTATTAGTAATGATGGATATACTTTTCTTTTCATATAATCCCTCTTATTATTATTTTTCCCATCAGCTTCTGCGATCCGAAGAACCTATCTCTATGAATTTATCTGGTCCAATTTTTGTAAAGCCTTATCGTGAACTATACATAGGCAAATGGCCAAATGAATTAAACAGTCGTCTAAAAGAAACTGAACCATCTTTTTCTCCCTTGGTATCACGATCAAGGTATNCAGAANAATGGANAGACACACATTACCATTGAAAGTTTCAAAATATTCAAAGA]

[+] EMBL CD201439             [ACTGTTAAGACCTTTATGTTAAAGTCTCACTGTATATACTTCAGTTCGAACATCTGAGTAGTGTCACTAGTCTTCATATACAAGTAGTGTGGATGACAGCTAAATTCACAAACTTTCATTAGTGAATTAGATTCTCCAACAATATTCAATTAGTCATCTTTCGTGAGGTGCTTTTAGATATCTTTTACCTTAAAACACCAGACTTTTTATTCCCATCTTACTGAAATAACACACATATGACCTTTTCGTTGTACGTCTGACTGTTTATATATACTGAGAATGAGAAAGCTTTTGCGCGTAGAGAAGACAGATCGATACTTGAGAAAATTCAAGCCATGAAGAATTCAAGTCTGTTATTAGTAATGATGGATATACTTTTCTTTTCATATAATCCCTCTTATTATTATTTTTCCCATCAGCTTCTGCGATCCGAAGAACCTATCTCTATGAATTTATCTGGTCCAATTTTTGTAAAGCCTTATCGTGAACTATACATAGGCAAATGGCCAAATGAATTAAACAGTCGTCTAAAAGAAACTGAACCATCTTTTTCTCCCTTGGTATCACGATCAAGGTATNCAGAANAATGGANAGACACACATTACCATTGAAAGTTTCAAAATATTCAAAGA]




>consensus_8692#0
ACTGTTAAGACCTTTATGTTAAAGTCTCACTGTATATACTTCAGTTCGAACATCTGAGTA
GTGTCACTAGTCTTCATATACAAGTAGTGTGGATGACAGCTAAATTCACAAACTTTCATT
AGTGAATTAGATTCTCCAACAATATTCAATTAGTCATCTTTCGTGAGGTGCTTTTAGATA
TCTTTTACCTTAAAACACCAGACTTTTTATTCCCATCTTACTGAAATAACACACATATGA
CCTTTTCGTTGTACGTCTGACTGTTTATATATACTGAGAATGAGAAAGCTTTTGCGCGTA
GAGAAGACAGATCGATACTTGAGAAAATTCAAGCCATGAAGAATTCAAGTCTGTTATTAG
TAATGATGGATATACTTTTCTTTTCATATAATCCCTCTTATTATTATTTTTCCCATCAGC
TTCTGCGATCCGAAGAACCTATCTCTATGAATTTATCTGGTCCAATTTTTGTAAAGCCTT
ATCGTGAACTATACATAGGCAAATGGCCAAATGAATTAAACAGTCGTCTAAAAGAAACTG
AACCATCTTTTTCTCCCTTGGTATCACGATCAAGGTATNCAGAANAATGGANAGACACAC
ATTACCATTGAAAGTTTCAAAATATTCAAAGA

consensusID : consensus_8692#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 496
fasta sequence

                              [ACAAACAACTGATCAATTGAATGAACAATTTAATACACATTCTCGTCGTATATATGATATAGTCAACTGTTTAAATCGGCTTCTGCGATCCGAAGAACCTATCTCTATGAATTTATCTGGTCCAATTTTTGTAAAGCCTTATCGTGAACTATACATAGGCAAATGGCCAAATGAATTAAACAGTCGTCTAAAAGAAACTGAACCATCTTTTTCTCCCTTGGTATCACGATCAAAGTATCAAGAAAATGG-AAAAGACCACACATTACCA-TTGAAAGTTTCAAATAATTCAAAAGATAAAAATCACTCAGATTTATCGTATTTTAATCAACTAATTGGGGAAAAAGGACTCAAATATAGTGTATGTCTTAATGATGTGCGAAGTCAACCGGTGTGTTTACTCCCAACTGGTTGGGAAGCAGCTACATTGAGTGCAATATCCAAAGCACATGAATTATATGGACAAAAGCTTTTTCCGACTACTGGTGCATGGTTTGTG]

[+] EMBL CD198870             [ACAAACAACTGATCAATTGAGTGAACAATTTAATACACATTCTCGTCGTATATATGATATAGTCAACTGTTTAAATCGGCTTCTGCGATCCGAAGAACCTATCTCTATGAATTTATCTGGTCCAATTTTTGTAAAGCCTTATCGTGAACTATACATAGGCAAATGGCCAAATGAATTAAACAGTCGTCTAAAAGAAACTGAACCATCTTTTTCTCCCTTGGTATCACGATCAAAGTATCAAGAAAATGGAAAAAGACCACACATTACCA TTGAAAGTTTCAAATAATTCAAAAGATAAAAATCACTCAGATTTATCGTATTTTAATCAACTAATTGGGGAAAAAGGACTCAAATATAGTGT                                                                                                                                        ]
[+] EMBL CD199031             [ACAAACAACTGATCAATTGAATGAACAATTTAATACACATTCTCGTCGTATATATGATATAGTCAACTGTTTAAATCGGCTTCTGCGATCCGAAGAACCTATCTCTATGAATTTATCTGGTCCAATTTTTGTAAAGCCTTATCGTGAACTATACATAGGCAAATGGCCAAATGAATTAAACAGTCGTCTAAAAGAAACTGAACCATCTTTTTCTCCCTTGGTATCACGATCAAAGTATCAAGAAAATGG AAAAGACCACACATTACCA TTGAAAGTTTCAAATAATTCANAAGATAANAATCACTCAGATTTATCGTATTTTAATCAACTAATTGNGGA                                                                                                                                                             ]
[+] EMBL CD198941             [ACAAACAACTGATCAATTGAATGAACAATTTAATACACATTCTCGTCGTATATATGATATAGTCAACTGTTTAAATCGGCTTCTGCGATCCGAAGAACCTATCTCTATGAATTTATCTGGTCCAATTTTTGTAAAGCCTTATCGTGAACTATACATAGGCAAATGGCCAAATGAATTAAACAGTCGTCTAAAAGAAACTGAACCATCTTTTTCTCCCTTGGTATCACGATCAAAGTATCAAGAAAATGG AAAAGACCACACATTACCA TTGAAAGTTTCAAATAATTCAAAAGATAANAATCACTCAGATTTATCGTATTTTAATCAACTAATTGnnn                                                                                                                                                              ]
[+] EMBL CD199036             [ACAAACAACTGATCAATTGAATGAACAATTTAATACACATTCTCGTCGTATATATGATATAGTCAACTGTTTAAATCGGCTTCTGCGATCCGAAGAACCTATCTCTATGAATTTATCTGGTCCAATTTTTGTAAAGCCTTATCGTGAACTATACATAGGCAAATGGCCAAATGAATTAAACAGTCGTCTAAAAGAAACTGAACCATCTTTTTCTCCCTTGGTATCACGATCAAAGTATCAAGAAAATGG AAAAGACCACACATTACCA TTGAAAGTTTCAAATAATTCAAAAGATAAAAATCACTCAGATTTATCG                                                                                                                                                                                    ]
[-] EMBL CD198978             [                                                                                                                                                                                TAAACAGTCGTCTAAAAGAAACTGAACCATCTTTTTCTCCCTTGGTATCACGATCAAAGTATCAAGAAAATGG AAAAGACCACACATTACCA TTGAAAGTTTCAAATAATTCAAAAGATAAAAATCACTCAGATCTATCGTATTTTAATCAACTAATTGGGGAAAAAGGACTCAAATATAGTGTATGTCTTAATGATGTGCGAAGTCAACCGGTGTGTTTACTCCCAACTGGTTGGGAAGCAGCTACATTGAGTGCAATATCCAAAGCACATGAATTATATGGACAAAAGCTTTTTCCGACTACTGGTGCATGGTTTGTG]
[-] EMBL CD199126             [                                                                                                                                                                                                                                                                       aTACCATTTGAAAGTTTCAAATAATTCAAAAGATAAAAATCACTCAGATTTATCGTATTTTAATCAACTAATTGGGGAAAAAGGACTCAAATATAGTGTATGTCTTAATGATGTGCGAAGTCAACCGGTGTGTTTACTCCCAACTGGTTGGGAAGCAGCTACATTGAGTGCAATATCCAAAGCACATGAATTATATGGACAAAAGCTTTTTCCGACTACTGGTGCATGGTTTGTG]




>consensus_8692#1
ACAAACAACTGATCAATTGAATGAACAATTTAATACACATTCTCGTCGTATATATGATAT
AGTCAACTGTTTAAATCGGCTTCTGCGATCCGAAGAACCTATCTCTATGAATTTATCTGG
TCCAATTTTTGTAAAGCCTTATCGTGAACTATACATAGGCAAATGGCCAAATGAATTAAA
CAGTCGTCTAAAAGAAACTGAACCATCTTTTTCTCCCTTGGTATCACGATCAAAGTATCA
AGAAAATGGAAAAGACCACACATTACCATTGAAAGTTTCAAATAATTCAAAAGATAAAAA
TCACTCAGATTTATCGTATTTTAATCAACTAATTGGGGAAAAAGGACTCAAATATAGTGT
ATGTCTTAATGATGTGCGAAGTCAACCGGTGTGTTTACTCCCAACTGGTTGGGAAGCAGC
TACATTGAGTGCAATATCCAAAGCACATGAATTATATGGACAAAAGCTTTTTCCGACTAC
TGGTGCATGGTTTGTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8692#0      ACTGTTAAGACCTTTATGTTAAAGTCTCACTGTATATACTTCAGTTCGAACATCTGAGTA 60
consensus_8692#1      ---------------------------------ACAAACAACTGATCAATTGAATGAACA 27
                                                       * * **  * * ** *     ***  *

consensus_8692#0      GTGTCAC---TAGTCTTCATATACAAGTAGTGTGGATGACAGCTAAATTCACAAACTTTC 117
consensus_8692#1      ATTTAATACACATTCTCGTCGTATATATGATATAGTCAACTGTTTAAATCG---GCTTCT 84
                       * * *     * ***     ** *  *  * * *   ** * * ** **     ***  

consensus_8692#0      ATTAGTGAATTAGATTCTCCAACAATATTCAATTAGTC-ATCTTTCGTGAGGTGCTTTTA 176
consensus_8692#1      GCGATCCGAAGAACCTATCTCTATGAATTTATCTGGTCCAATTTTTGTAAAGCCTTATCG 144
                         *    *  *   * **       *** *  * *** *  *** ** * *   * *  

consensus_8692#0      GATATCTTTTACCTTAAAACACCAGACTTTTTATTCCCATCTTACTGAAATAACACACAT 236
consensus_8692#1      TGAACTATACATAGGCAAATGGCCAAATGAATTAAACAGTCGTCTAAAAGAAACTGAACC 204
                         *   *  *     ***   *  * *   *    *  ** *    **  ***  *   

consensus_8692#0      ATGACCTTTTCGTTGTACGTCTGACTGTTTATATATACTGAGAATGAGAAAGCTTTTGCG 296
consensus_8692#1      AT--CTTTTTCTCCCTTGGTATCACGATCAAAGTATCAAGAAAATGGAAAAGACCACACA 262
                      **  * *****    *  ** * **  *  *  ***   ** ****  ****      * 

consensus_8692#0      CGTAGAGAAGACAGATC--GATACTTGAGAAAATTCAAGCCATGAAGAATTCAAGTCTGT 354
consensus_8692#1      T-TACCATTGAAAGTTTCAAATAATTCAAAAGATAAAAATCACTCAGATTTATCGTATTT 321
                        **     ** ** *    *** ** * ** **  **  **   *** **   ** * *

consensus_8692#0      TATT--AGTAATGATGGATATACTTTTCTTTTCATATAATCCCTCTTATTATTATTTTTC 412
consensus_8692#1      TAATCAACTAATTGGGGAAAAAGGACTCAA---ATATAGTGTATGTCTTAATGATGTGCG 378
                      ** *  * ****   *** * *    **     ***** *   * *  * ** ** *   

consensus_8692#0      CCATCAGCTTCTGCGATC-CGAAGAACCTATCTCTATGAATTTATCTGGTCCAATTTTTG 471
consensus_8692#1      AAGTCAACCGGTGTGTTTACTCCCAACTGGTTGGGAAGCAGCTACATTGAGTGCAATATC 438
                         *** *   ** * *  *    ***   *    * * *  **  * *       * * 

consensus_8692#0      TAAAGCCTTATCGTGAACTATACATAGGCAAATGGCCAAATGAATTAAACAGTCGTCTAA 531
consensus_8692#1      CAAAGCA----CATGAATTATA--TGGACAAAAGCTTTTTCCGACTA--CTGGTGCATGG 490
                       *****     * **** ****  * * **** *         * **  * *  *  *  

consensus_8692#0      AAGAAACTGAACCATCTTTTTCTCCCTTGGTATCACGATCAAGGTATNCAGAANAATGGA 591
consensus_8692#1      TTTGTG------------------------------------------------------ 496
                                                                                  

consensus_8692#0      NAGACACACATTACCATTGAAAGTTTCAAAATATTCAAAGA 632
consensus_8692#1      -----------------------------------------