These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8695#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 706 fasta sequence [GAGGCCAAAAATTTGGCACGAGGGACGCTATGACACTCAAGAAGACTTTGAGTTAATAATTTTCTTGTTGGCTATCTATTTCAAAGCATGTTCAACACTTGGTAATGACAGCACCAATAGTAATGTTTGCATTGAGTACCGTAAAAACGTGTCGATATACGTTAAAAATATAATATACAACATGTCAATCAAAACCGCGCCCGTTTCCTTCTGTGGTTGGTGTAGTGAAACTGTATATAAGTTGAAAAAAGTACTAGGGAAGCAAGAGGCTTACAATGCAGATGGGAAGGCATGTGTTGATCTTCTGGCGAACACAGAGAGGGGTACAATAGATTCTATCGACTTCATTTTCGATAAATGGAATCGTTCCTTCTGCTCCCATTGTCTTGAAGAATTTTCTTCCGATCAAAACACCAGTCTATCAACGGGTTCTTTCAATAACATAGAAGGGTCTAGACATCTTTTACACACGGATTCTCTATACAACTTGCAAGTCTACAGTAAAAACGTGCGTACATTCTTCGAAAAGCTTGATGATGCTTTAAGTTGTTTCATGCAGTTCATCAATAATCCCAACATATCCATTCTTAATGTATTAAATTTCCCTTCGTCCAGCACCTTGAATATCAGTTCGACGGTTTGTCATAATTGTTCAGCAGCATATTATGGTCTCTTAGATTATTACACCAATAATCTTCTAAGATAT] [+] EMBL CD079795 [GAGGCCAAAAATTTGGCACGAGGGACGCTATGACACTCAAGAAGACTTTGAGTTAATAATTTTCTTGTTGGCTATCTATTTCAAAGCATGTTCAACACTTGGTAATGACAGCACCAATAGTAATGTTTGCATTGAGTACCGTAAAAACGTGTCGATATACGTTAAAAATATAATATACAACATGTCAATCAAAACCGCGCCCGTTTCCTTCTGTGGTTGGTGTAGTGAAACTGTATATAAGTTGAAAAAAGTACTAGGGAAGCAAGAGGCTTACAATGCAGATGGGAAGGCATGTGTTGATCTTCTGGCGAACACAGAGAGGGGTACAATAGATTCTATCGACTTCATTTTCGATAAATGGAATCGTTCCTTCTGCTCCCATTGTCTTGAAGAATTTTCTTCCGATCAAAACACCAGTCTATCAACGGGTTCTTTCAATAACATAGAAGGGTCTAGACATTTTTTACACACGGATTCTCTATACAACTTGCAAGTCTACAGTAAAAACGTGCGTACATTCTTCGAAAAGCTTGATGATGCTTTAAGTTGTTTCATGCAGTCCATCAATAATCCCAACATATCCATTCTTAATGTATTAAATTTCCCTTCGTCCAGCACCTTGAATATCAGTTCGACGGTTTGTCATAATTGTTCAGCAGCATATTATGGTCTCTTAGATTATTACACCAATAATCTTCTAAGATAT] [+] EMBL CD178818 [ ATCTTCTGGCGAACACAGAGAGGGGTACAATAGATTCTATCGACTTCATTTTCGATAAATGGAATCGTTCCTTCTGCTCCCATTGTCTTGAAGAATTTTCTTCCGATCAAAACACCAGTCTATCAACGGGTTCTTTCAATAACATAGAAGGGTCTAGACATCTTTTACACACGGATTCTCTATACAACTTGCAAGTCTACAGTAAAAACGTGCGTACATTCTTCGAAAAGCTTGATGATGCTTTAAGTTGTTTCATGCAGTTCATCAATAATCCCAACATATCCATTCTTAATGTATTAAATTTC ] [+] EMBL CD178841 [ ATCTTCTGGCGAACACAGAGAGGGGTACAATAGATTCTATCGACTTCATTTTCGATAAATGGAATCGTTCCTTCTGCTCCCATTGTCTTGAAGAATTTTCTTCCGATCAAAACACCAGTCTATCAACGGGTTCTTTCAATAACATAGAAGGGTCTAGACATCTTTTACACACGGATTCTCTATACAACTTGCAAGTCTACAGTAAAAACGTGCGTACATTCTTCGAAAAGCTTGATGATGCTTTAAGTTGTTTCATGCAGTTCATCAATAATCCCAACATATCCATTCTTAATGTATTAAATTTC ] [+] EMBL CD077787 [ ATCGACTTTATTTTCGATAAATGGAATCGTTCCTTCTGCTCCCATTGTCTTGAAGAATTTTCTTCCGATCAAAACACCAGTCTATCAACGGGTTCTTTCAATAACATAGAAGGGTCTAGACATCTTTTACACACGGATTCTCTATACAACTTGCAAGTCTACAGTAAAAACGTGCGTACATTCTTCGAAAAGCTTGATGATGCTTTA ] [-] EMBL CD062402 [ gggAATCCCAACATATCCATTCTTAATGTATTAAATTTCCCTTCGTCCAGCACCTTGAATATCAGTTCGACGGTTTGTCATAATTGTTCAGCAGCATATTATGGTCTCTTAGATTA ] consensusID : consensus_8695#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 359 fasta sequence [CCACCAGGCTTTTTTAAATTTTGCCTTTATTCACTTTTGAGGTTTTATGCGACGCTATGACACTCAAGAAGACTTTGAGTTCAATAATTTTCTTGTTGGCTATCTATTTCAAAGCATGTTCAACACTTGGTAATGACAGCACCAATAGTAATGTTTGCATTGAGTACCGTAAAAACGTGTCGATATACGTTAAAAATATAATATACAACATGTCAGCCAAAACCGCGCCCGTTTCCTTCTGTGGAATAGGTGTAGTGAAACTGTATATAAGTTGAAAAAAGTACTAGGGAAGCAAGAGGCTTACAATGCAGATGGGAAGGCATGTGTTGATCTTCTGGTGGACAGAAGGTCTAATCACT] [-] EMBL CD122175 [CCACCAGGCTTTTTTAAATTTTGCCTTTATTCACTTTTGAGGTTTTATGCGACGCTATGACACTCAAGAAGACTTTGAGTTCAATAATTTTCTTGTTGGCTATCTATTTCAAAGCATGTTCAACACTTGGTAATGACAGCACCAATAGTAATGTTTGCATTGAGTACCGTAAAAACGTGTCGATATACGTTAAAAATATAATATACAACATGTCAGCCAAAACCGCGCCCGTTTCCTTCTGTGGAATAGGTGTAGTGAAACTGTATATAAGTTGAAAAAAGTACTAGGGAAGCAAGAGGCTTACAATGCAGATGGGAAGGCATGTGTTGATCTTCTGGTGGACAGAAGGTCTAATCACT] [+] EMBL CD124304 [ AATTTTGCCTTTATTCACTTTTGAGGTTTTATGCGACGCTATGACACTCAAGAAGACTTTGAGTTCAATAATTTTCTTGTTGGCTATCTATTTCAAAGCATGTTCAACACTTGGTAATGACAGCACCAATAGTAATGTTTGCATTGAGTACCGTAAAAACGTGTCGATATACGTTAAAAATATAATATACAACATGTCAGCCAAAACCGCGCCCGTTTCCTTCTGTGG TTGGTGTAGTGAAACTGTATATAAGTTGAAAAAAGTACTAGGGAAGCAAGAGGCTTACAATGCAGATGGGAAGGCATG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8695#0 --------------------------GAGGCCAAAAATTTGGCACGAGG-GACGCTATGA 33 consensus_8695#1 CCACCAGGCTTTTTTAAATTTTGCCTTTATTCACTTTTGAGGTTTTATGCGACGCTATGA 60 ** * ** * * ********** consensus_8695#0 CACTCAAGAAGACTTTGAGTT-AATAATTTTCTTGTTGGCTATCTATTTCAAAGCATGTT 92 consensus_8695#1 CACTCAAGAAGACTTTGAGTTCAATAATTTTCTTGTTGGCTATCTATTTCAAAGCATGTT 120 ********************* ************************************** consensus_8695#0 CAACACTTGGTAATGACAGCACCAATAGTAATGTTTGCATTGAGTACCGTAAAAACGTGT 152 consensus_8695#1 CAACACTTGGTAATGACAGCACCAATAGTAATGTTTGCATTGAGTACCGTAAAAACGTGT 180 ************************************************************ consensus_8695#0 CGATATACGTTAAAAATATAATATACAACATGTCAATCAAAACCGCGCCCGTTTCCTTCT 212 consensus_8695#1 CGATATACGTTAAAAATATAATATACAACATGTCAGCCAAAACCGCGCCCGTTTCCTTCT 240 *********************************** *********************** consensus_8695#0 GTGG--TTGGTGTAGTGAAACTGTATATAAGTTGAAAAAAGTACTAGGGAAGCAAGAGGC 270 consensus_8695#1 GTGGAATAGGTGTAGTGAAACTGTATATAAGTTGAAAAAAGTACTAGGGAAGCAAGAGGC 300 **** * **************************************************** consensus_8695#0 TTACAATGCAGATGGGAAGGCATGTGTTGATCTTCTGGCGAACACAGAGAGGGGTACAAT 330 consensus_8695#1 TTACAATGCAGATGGGAAGGCATGTGTTGATCTTCTGGTGGACA-----GAAGGTCTAAT 355 ************************************** * *** *** *** consensus_8695#0 AGATTCTATCGACTTCATTTTCGATAAATGGAATCGTTCCTTCTGCTCCCATTGTCTTGA 390 consensus_8695#1 CACT-------------------------------------------------------- 359 * consensus_8695#0 AGAATTTTCTTCCGATCAAAACACCAGTCTATCAACGGGTTCTTTCAATAACATAGAAGG 450 consensus_8695#1 ------------------------------------------------------------ consensus_8695#0 GTCTAGACATCTTTTACACACGGATTCTCTATACAACTTGCAAGTCTACAGTAAAAACGT 510 consensus_8695#1 ------------------------------------------------------------ consensus_8695#0 GCGTACATTCTTCGAAAAGCTTGATGATGCTTTAAGTTGTTTCATGCAGTTCATCAATAA 570 consensus_8695#1 ------------------------------------------------------------ consensus_8695#0 TCCCAACATATCCATTCTTAATGTATTAAATTTCCCTTCGTCCAGCACCTTGAATATCAG 630 consensus_8695#1 ------------------------------------------------------------ consensus_8695#0 TTCGACGGTTTGTCATAATTGTTCAGCAGCATATTATGGTCTCTTAGATTATTACACCAA 690 consensus_8695#1 ------------------------------------------------------------ consensus_8695#0 TAATCTTCTAAGATAT 706 consensus_8695#1 ---------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||