cluster # 8696

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Schistosoma mansoni
cluster # 8696 cluster # 8696 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8696#0 length = 390 sequences # 6

consensus_8696#1 length = 256 sequences # 1

consensusID : consensus_8696#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 390
fasta sequence

                              [TTCTTCAAGAAGAAAACGTGTGTAAACATGG-ATCGTCAGCTGACAGAACAAGAAATGCGCACTATTTTTGACCACAT-GGATAGGAATCACAATGGATACGTGACTGCTAAAGAACTGAAATATTTTTTAAGACTACACGATGCGAGAGTCACAAATAGAGAAGTCAAAG-AATTCATTCGTAAGCTTGACGAAAGTGGAGACGGTCAAATAAGTTTGCATGAATTTATGAAAGCATTTTC-GTCACAAAGAAGATCCTTTACTACAGACTTCAGGACAATAC-GAAGATAAATATTTGGTTGGCGTATAATTTCAAATG-TTTAATCAACAATTTTATAGATTTACTAAAATTATTAAATGAAAATG-CCTTT-AATAAAAACATAATAATAAATT]

[-] EMBL CD189926             [TTCTTCAAGAAGAAAACGTGTGTAAACATGG ATCGTCAGCTGACAGAACAAGAAATGCGCACTATTTTTGACCACAT GGATAGGAATCACAATGGATACGTGACTGCTAAAGAACTGAAATATTTTTTAAGACTACACGATGCGAGAGTCACAAATAGAGAAGTCAAAG AATTCATTCGTAAGCTTGACGAAAGTGGAGACGGTCAAATAAGTTTGCATGAATTTATGAAAGCATTTTC GTCACAAAGAAGATCCTTTA                                                                                                                                       ]
[+] EMBL AA559693             [                   GTGTAAACATGGNATCGTCAGCTGACAGAACAAGAAATGCGCACTATTTTTGACCACNT GGATNGGAATCACAATGGATACGTGACTGCTAAAGAACTGAAATATTTTTTAAGACTACACGATGCGAGAGTCACAAATAGAGAAGTCAAAGAAATTCATTCGTAAGCTTGACGAAAGTGGAGACGGTCAAATAAGTTTGCATGAATTTATGAAAGCATTTTC GTCACAAAGAAGATCCTTTACTACAGACTTCAGGACAATAC GAAGATAAATATTTGGTNGGtc                                                                                           ]
[+] EMBL AA559449             [                                ATCGTCAGCTGACAGAACAAGAAATGCGCACTATTTTTGACCACNT GGATAGGAATCACAATGGATACGTGACTGCTAAAGAACTGAAATATTTTTTAAGACTACNCGATGCGAGAGTCNCAAATAGAGAANTCAAAG AATTCATTCGTAAGCTTGACGAAAGTGGAGACGGTCAAATAANTTTGCATGAATTTATGAAAGCATTTNC GTCACAAAGAAGATCCTTTACTACAGACTTCGGGACAATAC GAAGATAAATNTTTGGTTGTCGTATAATTTCAAATGTTTTAATCAA                                                                   ]
[+] EMBL AA559537             [                                                           GCACTATTTTTGACCACATGGGATAGGAATCACAATGGATACGTGACTGCTAAAGAACTGAAATATTTTTTAAGACTACCCGATG                                                                                                                                                                                                                                                              ]
[-] EMBL AA999309             [                                                                                                                                        ACACGATGCAAGAGTCCCAAATAGAGAAGTCAAAG AATTCATTCGTAAGCTTGACGAAAGTGGAGACGGTCAAATAAGTTNGCANGAATTTATGAAAGCATTTTC GTCACAAAGAAGATCCTTTACTACAGACTTCAGGACAATAC GAAGATAAATATTTGGTTGTCGTATAATTTCAAATG TTTAATCAACAATTTTATAGATTTACTAAAATTATTAAATGAAAATG CCTTT AATAAAAACATAATAATAAATT]
[+] EMBL AA952782             [                                                                                                                                                                                                                                ATTTATGAAAGCATTTTCTGTCACAAAGAAGATCCTTTACTACAGACTTCAGGACAATACTGAAGATAAATATTTGGTTTGCGTATAATTTCAAATG TTTAATCAACAATTTTATAGATTTACTAAAATTATTAAATG AAATGTCCTTTCAATAAAAACAT           ]




>consensus_8696#0
TTCTTCAAGAAGAAAACGTGTGTAAACATGGATCGTCAGCTGACAGAACAAGAAATGCGC
ACTATTTTTGACCACATGGATAGGAATCACAATGGATACGTGACTGCTAAAGAACTGAAA
TATTTTTTAAGACTACACGATGCGAGAGTCACAAATAGAGAAGTCAAAGAATTCATTCGT
AAGCTTGACGAAAGTGGAGACGGTCAAATAAGTTTGCATGAATTTATGAAAGCATTTTCG
TCACAAAGAAGATCCTTTACTACAGACTTCAGGACAATACGAAGATAAATATTTGGTTGG
CGTATAATTTCAAATGTTTAATCAACAATTTTATAGATTTACTAAAATTATTAAATGAAA
ATGCCTTTAATAAAAACATAATAATAAATT

consensusID : consensus_8696#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 256
fasta sequence

                              [ACTACACGATGCGAGAGTCACAAATAGAGAAGTCAAAGAATTCATTCGTAAGCTTGACGAAAGTGGAGACGGTCAAAATAAGTTTCGATGAATTTATGAAAAGCATTTTCGTCACAAAGAAGATCCTTTACTACAGACTTCAGGACAATACGAATATAAATATTTGGTTGTCGTATAATTCAATGTTAATCAACAATTTATAGATTCATAAATTATTAATGAAATGCTTATAAACATATATAATTGTCGTCAAAAA]

[+] EMBL AA952799             [ACTACACGATGCGAGAGTCACAAATAGAGAAGTCAAAGAATTCATTCGTAAGCTTGACGAAAGTGGAGACGGTCAAAATAAGTTTCGATGAATTTATGAAAAGCATTTTCGTCACAAAGAAGATCCTTTACTACAGACTTCAGGACAATACGAATATAAATATTTGGTTGTCGTATAATTCAATGTTAATCAACAATTTATAGATTCATAAATTATTAATGAAATGCTTATAAACATATATAATTGTCGTCAAAAA]




>consensus_8696#1
ACTACACGATGCGAGAGTCACAAATAGAGAAGTCAAAGAATTCATTCGTAAGCTTGACGA
AAGTGGAGACGGTCAAAATAAGTTTCGATGAATTTATGAAAAGCATTTTCGTCACAAAGA
AGATCCTTTACTACAGACTTCAGGACAATACGAATATAAATATTTGGTTGTCGTATAATT
CAATGTTAATCAACAATTTATAGATTCATAAATTATTAATGAAATGCTTATAAACATATA
TAATTGTCGTCAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8696#0      TTCTTCAAGAAGAAAACGTGTGTAAACATGGATCGTCAGCTGACAGAACAAGAAATGCGC 60
consensus_8696#1      ------------------------------------------------------------
                                                                                  

consensus_8696#0      ACTATTTTTGACCACATGGATAGGAATCACAATGGATACGTGACTGCTAAAGAACTGAAA 120
consensus_8696#1      ------------------------------------------------------------
                                                                                  

consensus_8696#0      TATTTTTTAAGACTACACGATGCGAGAGTCACAAATAGAGAAGTCAAAGAATTCATTCGT 180
consensus_8696#1      -----------ACTACACGATGCGAGAGTCACAAATAGAGAAGTCAAAGAATTCATTCGT 49
                                 *************************************************

consensus_8696#0      AAGCTTGACGAAAGTGGAGACGGTCAAA-TAAGTTTGCATGAATTTATGAAA-GCATTTT 238
consensus_8696#1      AAGCTTGACGAAAGTGGAGACGGTCAAAATAAGTTTCGATGAATTTATGAAAAGCATTTT 109
                      **************************** *******  ************** *******

consensus_8696#0      CGTCACAAAGAAGATCCTTTACTACAGACTTCAGGACAATACGAAGATAAATATTTGGTT 298
consensus_8696#1      CGTCACAAAGAAGATCCTTTACTACAGACTTCAGGACAATACGAATATAAATATTTGGTT 169
                      ********************************************* **************

consensus_8696#0      GGCGTATAATTTCAAATGTTTAATCAACAATTTTATAGATTTACTAAAATTATTAAATGA 358
consensus_8696#1      GTCGTATAATTC--AATGTT-AATCAACAATTT-ATAGATTCAT--AAATTATTAA--TG 221
                      * *********   ****** ************ ******* *   **********    

consensus_8696#0      AAATGCCTTTAATAAAAACATAATAATAAATT---- 390
consensus_8696#1      AAATGCTTATAA-ACATATATAATTGTCGTCAAAAA 256
                      ****** * *** * * * *****  *