These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8698#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 973 fasta sequence [TAAAGTTTATCTGTT-TCATTGATTAATAAATACTTGGCGGTAAATAACATATTAGTAAAACAACGATACTTCAAAGTTCAAATAATAATAATAATAATAAAAGATAAATAAGAAATAAATAAACAATAATAGTAACAACAACTCAAGGATAATTTAACACGGAAAAATAACAAAAAAATAGGATATGAAAAGAAATATCACCAAGTCAGTTACAACGTAAAACCAGGCATATATATATGCATCGGTCCAAGTTGACATACGTCGTTACCACCAAGTATAACGCACACACACACACACACGAAAACAAGAACAAAAATATACAATCACAAGAAATGCGGAATGAAAAAAAAGAGAGTAAACTGACTTGATTCACACAACAGAATACTATGTCGATAGATACACATGGCGGTTGTGGTAATAATGCATCTGATGAAAGCAGAATTTCATAATTCCTTTTCAATAAATATGAGGTCACGAAATTATGGCGTTGTAATTCAAGTTTAAGACAGATAAATGAATATTTTTCATTGGATAAAACAACAGCAACAACAACATTTCAATTGCCTTCAAGTAAATTTTGCACATTTGTTGAATTTAAGCATGATTTACCTTCAAGACGATTAACTATATGTGTTTGTCCATTTAAAGATGATAATGACAGTAATGTGGGCAACTCTTTAACTTGATAAAGCGGATGAATTCGAAATTTGTTATTAGAATCCTTCCACTCATTTTCGTTGCCCACTTCAATCATTATAAATAAATCATTATCTTTAGTAACTCCAATCTTACTTTCTATAATAGATTCACATTTACTACAATCCTCTGACCAACTATCCCCAGTGTTCATATCAGTTGAACCAGAAAAATAAACGAATACAAGACGCCCATTTTG-AT-GTG-CTAATTCAATTTGACTAGCAAGTTCATCAATAGATTGAACAAACAATTCTTCTATAGGCATATTACATGCAAC] [+] EMBL CD073693 [TAAAGTTTATCTGTT TCATTGATTAATAAATACTTGGCGGTAAATAACATATTAGTAAAACAACGATACTTCAAAGTTCAAATAATAATAATAATAATAAAAGATAAATAAGAAATAAATAAACAATAATAGTAACAACAACTCAAGGATAATTTAACACGGAAAAATAACAAAAAAATAGGATATGAAAAGAAATATCACCAAGTCAGTTACAACGTAAAACCAGGCATATATATATGCATCGGTCCAAGTTGACATACGTCGTTACCACCAAGTATAACGCACACACACACACACACGAAAACAAGAACAAAAATATACAATCACAAGAAATGCGGAATGAAAAAAAAGAGAGTAAACTGACTTGATTCACACAACAGAATACTATGTCGATAGATACACATGGCGGTTGTGGTAATAATGCATCTGATGAAAGCAGAATTTCATAATTCCTTTTCAATAAATATGAGGTCACGAAATTATGGCGTTGTAATTCAAGTTTAAGACAGATAAATGAATATTTTTCATTGGATAAAACAACAGCAACAACAACATTTCAATTGCCTTCAAGTAAATTTTGCACATTTGTTGAATTTAAGCATGATTTACCTTCAAGACGATTAACTATATGTGTTTGTCCATTTAAAGATGA ] [+] EMBL CD077194 [TAAAGTTTATCTGTTAACATTGATTAATAAATATTTGGCGGTAAATAACATATTAGTAGAACAACGATACTTCAAAGTTCAAATAATAATAATAATAATAAAAGATAAATAAGAAATAAATAAACAATAATAGTAACAACAACTCAAGGATAATTTAACACGGAAAAATAACAAAAAAATAGGATATGAAAAGAAATATCACCAAGTCAGTTACAACGTAGAACCAGGCATATATATATGCATCGGTCCAAGTTGACATACGTCGTTACCACCAAGTATAACGCACACACACACACACACGAAAACAAGAACAAAAATATACAATCACAAGAAATGCGGAATGAAAAAAAAGAGAGTAAACTGACTTGATTCACACAACAGAATACTATGTCGATAGATACACATGGCGGTTGTGGTAATAATGCATCTGATGAAAGCAGAATTTCATAATTCCTTTTCAATAAATATGAGGTCACGAAATTATGGCGTTGTAATTCAAGTTTAAGACAGATAAATGAATATTTTTCATTGGATAAAACAACAGCAACAACAACATTTCAATTGCCTTCAAGTAAATTTTGCACATTTGTTGAATTTAAGCATGATTTACCTTCAAGACGATTAA ] [-] EMBL CD079987 [ AGAACAAAAATATACAATCCCAAGAAATGCGGAATGAAAAAAAAGAGAGTAAACTGACTTGATTCACACAACAGAATACTATGTCGATAGATACACATGGCGGTTGTGGTAATAATGCATCTGATGAAAGCAGAATTTCATAATTCCTTTTCAATAAATATGAGGTCACGAAATTATGGCGTTGTAATTCAAGTTTAAGACAGATAAATGAATATTTTTCATTGGATAAAACAACAGCAACAACAACATTTCAATTGCCTTCAAGTAAATTTTGCACATTTGTTGAATTTAAGCATGATTTACCTTCAAGACGATTAACTATATGTGTTTGTCCATTTAAAGATGATAATGACAGTAATGTGGGCAACTCTTTAACTTGATAAAGCGGATGAATTCGAAATTTGTTATTAGAATCCTTCCACTCATTTTCGTTGCCCACTTCAATCATTATAAATAAATCATTATCTTTAGTAACTCCAATCTTACTTTCTATAATAGATTCACATTTACTACAATCCTCTGACCAACTATCCCCAGTGTTCATATCAGTTGAACCAGAAAAATAAACGAATACAAGACGCCCATTTTG AT GTG CTAATTCAATTTGACTAGCAAGTTCATCAATAGATTGAACAAACAATTCTTCTATAGGCATATTACATGCAAC] [-] EMBL CD084196 [ ATTCACACAACAGAATACTATGTCGATAGATACACATGGCGGTTGTGGTAATAATGCATCTGATGAAAGCAGAATTTCATAATTCCTTTTCAATAAATATGAGGTCACGAAATTATGGCGTTGTAATTCAAGTTTAAGACAGATAAATGAATATTTTTCATTGGATAAAACAACAGCAACAACAACATTTCAATTGCCTTCAAGTAAATTTTGCACATTTGTTGAATTTAAGCATGATTTACCTTCAAGACGATTAACTATATGTGTTTGTCCATTTAAAGATGATAATGACAGTAATGTGGGCAACTCTTTAACTTGATAAAGCGGATGAATTCGAAATTTGTTATTAGAATCCTTCCACTCATTTTCGTTGCCCACTTCAATCATTATAAATAAATCATTATCTTTAGTAACTCCAATCTTACTTTCTATAATAGATTCACATTTACTACAATCCTCTGACCAACTATCCCCAGTGTTCATATCAGTTGAACCAGAAAAATAAACGAATACAAGACGCCCATTTTGCCTCGTGCCGAATTCgtgcc ] consensusID : consensus_8698#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 774 fasta sequence [GGGGTTACCCCCCTGTGGCCCCCCCCCCGGGGTTTTTCGCGGGGAACAACAAAATGGTTTGGAAAAAATTCCCCCCGCGTTTCGGGGAACCCGGGATAAATAGCGGGCCCAGGACAAGTGGGTCCCCCATTAGAGCCCCCCCCCCCCCCAAAACAGCAAAAATTCCTTCCCAAAATTCGGATAAAAAAAAGGTTAACTTTTTTTCCCCCCCCAAATTTTTGCGAAGATCCCAGGCGGGTTGGTTATAACGCTTTGATAAACAGAATTCCTATTCCTTTCAATAAATAGAGTCCCGAATTTAGGGCGTGTAATCCAGGTTAAGCCAGATAAATGATATTTTTCATTGGATAACCACCAGCAACACACATTTCANNNTGCCTTCAAGTAAATTTTGCACATNTGTGAAATTTAAGCATGATTTACTTCAAGACGATAACTATATGTGTTGTCCATTAAAGATGATAATGCAGTAATGTGGCACTCTCTATCTTGTAAAAAANNNNAATCGGGACGGGGGGCAAAGTTATACCCTCCCCTTCGGGGCCGGCGCCCATCCCATAAAAAATAAAAATATTTTGGGACNCCTCTCTTNCCTTTTCTAAAAGAAAACCACTTCANACCATCCTCTGACCAACTATCCCCAGTGTTCATATCAGTTGAACCAGAAAAATAAACGAATACAAGACGCCCATTTTGATGTGCTAATTCAATTTGACTAGCAAGCTCATCAATAGATTGAACAAACAATTCTTCTATAGGCATATTACATGCAAC] [-] EMBL CD079419 [GGGGTTACCCCCCTGTGGCCCCCCCCCCGGGGTTTTTCGCGGGGAACAACAAAATGGTTTGGAAAAAATTCCCCCCGCGTTTCGGGGAACCCGGGATAAATAGCGGGCCCAGGACAAGTGGGTCCCCCATTAGAGCCCCCCCCCCCCCCAAAACAGCAAAAATTCCTTCCCAAAATTCGGATAAAAAAAAGGTTAACTTTTTTTCCCCCCCCAAATTTTTGCGAAGATCCCAGGCGGGTTGGTTATAACGCTTTGATAAACAGAATTCCTATTCCTTTCAATAAATAGAGTCCCGAATTTAGGGCGTGTAATCCAGGTTAAGCCAGATAAATGATATTTTTCATTGGATAACCACCAGCAACACACATTTCANNNTGCCTTCAAGTAAATTTTGCACATNTGTGAAATTTAAGCATGATTTACTTCAAGACGATAACTATATGTGTTGTCCATTAAAGATGATAATGCAGTAATGTGGCACTCTCTATCTTGTAAAAAANNNNAATCGGGACGGGGGGCAAAGTTATACCCTCCCCTTCGGGGCCGGCGCCCATCCCATAAAAAATAAAAATATTTTGGGACNCCTCTCTTNCCTTTTCTAAAAGAAAACCACTTCANACCATCCTCTGACCAACTATCCCCAGTGTTCATATCAGTTGAACCAGAAAAATAAACGAATACAAGACGCCCATTTTGATGTGCTAATTCAATTTGACTAGCAAGCTCATCAATAGATTGAACAAACAATTCTTCTATAGGCATATTACATGCAAC] consensusID : consensus_8698#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 458 fasta sequence [TAAAGTTTATTTGTTAACATTGATTAATAAATATTTGGCGGTAAATAACATATTAGTACAACAACGATACTTCAAAGTTCAAATAATATTAATAATAATAAAAGATAATTAAGAAATAAATAAACAATAATAGTAACAACAACTCAGGGATAATTTAACACGGAAAAATAACAAAAAAATAGGGTATGAAAAGAAATATCACCAAGTCAGTTAGTCACTCAGTTACAACGTATAACCAGGCATATATATATGCATCGGTCCAAGTTGACATACGTCGTTACCACCAAGTATAACGCACACACACTCACACACGAGAACAATAACATAATTATACACTCTCAAGAAATGCGGAATGAAAAAAAAGAGAGTAAACTGACTTGATTCACACAACAGAATACTATGTCGATAGATACACATGGCGGTTGTGGTAATAATGCATCTGATGAAAGCACAATTTC] [+] EMBL CD077213 [TAAAGTTTATTTGTTAACATTGATTAATAAATATTTGGCGGTAAATAACATATTAGTACAACAACGATACTTCAAAGTTCAAATAATATTAATAATAATAAAAGATAATTAAGAAATAAATAAACAATAATAGTAACAACAACTCAGGGATAATTTAACACGGAAAAATAACAAAAAAATAGGGTATGAAAAGAAATATCACCAAGTCAGTTAGTCACTCAGTTACAACGTATAACCAGGCATATATATATGCATCGGTCCAAGTTGACATACGTCGTTACCACCAAGTATAACGCACACACACTCACACACGAGAACAATAACATAATTATACACTCTCAAGAAATGCGGAATGAAAAAAAAGAGAGTAAACTGACTTGATTCACACAACAGAATACTATGTCGATAGATACACATGGCGGTTGTGGTAATAATGCATCTGATGAAAGCACAATTTC] consensusID : consensus_8698#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 131 fasta sequence [ACGCCCATAATTTCGTGACCTCATATTCTATTCGAAAAGGAATTATGCAAATTCTGCTTTCATCAGATGCATTATTACCACAACGCCCATGTGTATTTATGCACATGATATTCTGTTGGTGTAATCAGTCA] [+] EMBL AA952765 [ACGCCCATAATTTCGTGACCTCATATTCTATTCGAAAAGGAATTATGCAAATTCTGCTTTCATCAGATGCATTATTACCACAACGCCCATGTGTATTTATGCACATGATATTCTGTTGGTGTAATCAGTCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8698#0 TAAAGTTTATCTGTTT---CATTGATTAATAAATACTTGGCGGTAAATAACATATTAGTA 57 consensus_8698#2 TAAAGTTTATTTGTTAA--CATTGATTAATAAATATTTGGCGGTAAATAACATATTAGTA 58 consensus_8698#1 -GGGGTTACCCCCCTGTGGCCCCCCCCCCGGGGTTTTTCGCGGGGAACAACAAAATGGTT 59 consensus_8698#3 ------------------------------------------------------------ consensus_8698#0 AAACAACGATACTTCAAA-GTTCAAATAATAATAATAATAATAAAAGATAAATAAGAAAT 116 consensus_8698#2 CAACAACGATACTTCAAA-GTTCAAATAATATTAATAATAATAAAAGATAATTAAGAAAT 117 consensus_8698#1 TGGAAAAAATTCCCCCCGCGTTTCGGGGAACCCGGGATAAATAGCGGGCCCAGGACAAGT 119 consensus_8698#3 ------------------------------------------------------------ consensus_8698#0 AAATAAACAATAATAGTAACAAC-------AACTCAAGGATAATTTAACACGGAAAAATA 169 consensus_8698#2 AAATAAACAATAATAGTAACAAC-------AACTCAGGGATAATTTAACACGGAAAAATA 170 consensus_8698#1 GGGTCCCCCATTAGAGCCCCCCCCCCCCCCAAAACAGCAAAAATTCCTTCCCAAAATTCG 179 consensus_8698#3 ------------------------------------------------------------ consensus_8698#0 ACAAAAAAATAGGATA---------------TGAAA-----AGAAATATCAC---CAAGT 206 consensus_8698#2 ACAAAAAAATAGGGTA---------------TGAAA-----AGAAATATCAC---CAAGT 207 consensus_8698#1 GATAAAAAAAAGGTTAACTTTTTTTCCCCCCCCAAATTTTTGCGAAGATCCCAGGCGGGT 239 consensus_8698#3 ------------------------------------------------------------ consensus_8698#0 CAGTTA-------------CAACGTAAAACCAGGCATATATATATGCATCGGTCCAAGTT 253 consensus_8698#2 CAGTTAGT-CACTCAGTTACAACGTATAACCAGGCATATATATATGCATCGGTCCAAGTT 266 consensus_8698#1 TGGTTATAACGCTTTGATAAACAGAATTCCTATTCCTTTCAATAAATAGAGTCCCGAATT 299 consensus_8698#3 ------------------------------------------------------------ consensus_8698#0 GACA-TACGTCGTTACCACCAAGTATAACGCACACACACACACACACGAAAAC----AAG 308 consensus_8698#2 GACA-TACGTCGTTACCACCAAGTATAACGCACACACACTCACACACGAGAAC----AAT 321 consensus_8698#1 TAGGGCGTGTAATCCAGGTTAAGCCAGATAAATGATATTTTTCATTGGATAACCACCAGC 359 consensus_8698#3 ------------------------------------------------------------ consensus_8698#0 AACAAA-AATATACAAT---CACAAGAAA----TGCGGA-ATGAAAAAAAAGAGAGTAAA 359 consensus_8698#2 AACATA-ATTATACACT---CTCAAGAAA----TGCGGA-ATGAAAAAAAAGAGAGTAAA 372 consensus_8698#1 AACACACATTTCANNNTGCCTTCAAGTAAATTTTGCACATNTGTGAAATTTAAGCATGAT 419 consensus_8698#3 -ACGCCCATAATTTCGTGACCTCATATTC--TATTCGAAAAGGAATTATGCAAATTCTGC 57 ** * * ** * * * * * * consensus_8698#0 CTGACTTGATTCACACAACAGAATACTATGTCGAT-AGATAC-ACATGGCGGT--TGTGG 415 consensus_8698#2 CTGACTTGATTCACACAACAGAATACTATGTCGAT-AGATAC-ACATGGCGGT--TGTGG 428 consensus_8698#1 TTACTTCAAGACG-ATAACTATATGTGTTGTCCATTAAAGATGATAATGCAGTAATGTGG 478 consensus_8698#3 TTTCATC-AGATGCATTATTAC-CACAACGCCCAT---GTGTATTTATGCA----CATGA 108 * * * * * * * ** ** ** consensus_8698#0 TAATAATGCATCTGATGAAAGCAGAATTTCATAATTCCTTTTCAATAAATATGAGGTCAC 475 consensus_8698#2 TAATAATGCATCTGATGAAAGCACAATTTC------------------------------ 458 consensus_8698#1 CACTC-TCTATCTTGTAAAAAANNNNAATCGGGACGGGGGGCAAAGTTATACCCTCCCCT 537 consensus_8698#3 TATTC---TGT-TGGTGTAATCAGTCA--------------------------------- 131 * * * * * ** consensus_8698#0 GAAATTATGGCGTTGTAATTCAAGTTTAAGACAGATAAATGAATATTTTTCATTGGATAA 535 consensus_8698#2 ------------------------------------------------------------ consensus_8698#1 TCGGGGCCGGCGCCCATCCCATAAAAAATAAAAATATTTTGGGACNCCTCTCTTNCCTTT 597 consensus_8698#3 ------------------------------------------------------------ consensus_8698#0 AACAACAGCAACAACAACATTTCAATTGCCTTCAAGTAAATTTTGCACATTTGTTGAATT 595 consensus_8698#2 ------------------------------------------------------------ consensus_8698#1 TCTAAAAGAAAACCACTTCANACCATCCTCTGACCAACTATCCCCAGTGTTCATATCAGT 657 consensus_8698#3 ------------------------------------------------------------ consensus_8698#0 TAAGCATGATTTACCTTCAAGACGATTAACTATATGTGTTTGTCCATTTAAAGATGATAA 655 consensus_8698#2 ------------------------------------------------------------ consensus_8698#1 TGAACCAGAAAAATAAACGAATACAAGACGCCCATTTTGATGTGCTAATTCAATTTGACT 717 consensus_8698#3 ------------------------------------------------------------ consensus_8698#0 TGACAGTAATGTGGGCAACTCTTTAACTTGATAAAGCGGATGAATTCGAAATTTGTTATT 715 consensus_8698#2 ------------------------------------------------------------ consensus_8698#1 AGCAAGCTCATCAATAGATTGAACAAACAATTCTTCTATAGGCATATTACATGCAAC--- 774 consensus_8698#3 ------------------------------------------------------------ consensus_8698#0 AGAATCCTTCCACTCATTTTCGTTGCCCACTTCAATCATTATAAATAAATCATTATCTTT 775 consensus_8698#2 ------------------------------------------------------------ consensus_8698#1 ------------------------------------------------------------ consensus_8698#3 ------------------------------------------------------------ consensus_8698#0 AGTAACTCCAATCTTACTTTCTATAATAGATTCACATTTACTACAATCCTCTGACCAACT 835 consensus_8698#2 ------------------------------------------------------------ consensus_8698#1 ------------------------------------------------------------ consensus_8698#3 ------------------------------------------------------------ consensus_8698#0 ATCCCCAGTGTTCATATCAGTTGAACCAGAAAAATAAACGAATACAAGACGCCCATTTTG 895 consensus_8698#2 ------------------------------------------------------------ consensus_8698#1 ------------------------------------------------------------ consensus_8698#3 ------------------------------------------------------------ consensus_8698#0 ATGTGCTAATTCAATTTGACTAGCAAGTTCATCAATAGATTGAACAAACAATTCTTCTAT 955 consensus_8698#2 ------------------------------------------------------------ consensus_8698#1 ------------------------------------------------------------ consensus_8698#3 ------------------------------------------------------------ consensus_8698#0 AGGCATATTACATGCAAC 973 consensus_8698#2 ------------------ consensus_8698#1 ------------------ consensus_8698#3 ------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||