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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8707#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1116 fasta sequence
[AGTGATTGACTGGGATTTAACTGTTCAGATTTTAATTCCGATCGATTAAGAGTAGAATGTTTTGTTTGTTCAAAATCAACAAATGGTCTTGGTGGAATTGGAGGTAAATGTGAACTTTTACAATCAGGAAAAAGAAACTCCAATTCTTGAGTAGTAGACTGAGGCTCTGAAGTGCATAGGAAATCGGAATCCATCACATTTAGGGGATTTTTAGGTCTAGGTAATGTGGAGAATTCTCTCCGTAGATGTTGTGCTTGAGATGTCTCGTCTTTATT-AATACCTTCAGTTTGTTCCCCAG-ATAC-TTTACGTATAGATTGGGGTTGATCGTATTTGCATTCCAATAATTTGTTTAAATTTGAATTGGATACTTGTATGGAATCGTTTATATGATCATTTGAATGTGTAATGTGTTTCGTCATCAGTGTAGGTAATAGATCTGCTTCGAAACTAGAATTAACTGTTGCACCTTTACATGAGACATTAGATCCATGACGACTGTGGTTTTGATAGTGATGAGAATTTTTCGTATTATGAACGAAGCTTGACAGCTTTGACGGCGATCGGAATCCAAATCCACTATTCCAACCGTCAAATGTTAACCCAGTATTGTTTG-AATGACCTGCGCTTG-TTGATGAACTATTTTGATTCTTTAAAATATTACTGCTGTCTAAATTGCTATTATTGGGACTAGGGATGGTTGAGGAAGTTGTTCCGTATATTTTCTGTGGTAAATATGACAAGGATGGTGTGGGTAATGTAGGAGGAGGTTCTAAAATAAGCGAAGTTNTATAATTATCTTCTTCTAAAAACTTCTGTAACTCCTCTATATAGCGTTGAGCACATAGATATGCATTGAGTGTTTCATCCACAGCAAAGGAGTATTCAGATTGTTGAAAATATGCTATTTTATCAATAATCGAGTTGATTTTCGTGAACCATATGGCAGTTGGCTTTCCATTTATACGTGGTTGAGCCACATTCGTATACGTTAAATCAGATAAATATAAACCTAGATAAGGGATACCAGGAAGACTGATAGAATTCATATGTTCACGCTGTCTGCGACAATTATCATTCTGACTAAAAAGCTCCTCCAAACGCCTGTACGCTGCACGA]
[+] EMBL CD170820 [AGTGATTGACTGGGATTTAACTGTTCAGATTTTAATTCCGATCGATTAAGAGTAGAATGTTTTGTTTGTTCAAAATCAACAAATGGTCTTGGTGGAATTGGAGGTAAATGTGAACTTTTACAATCAGGAAAAAGAAACTCCAATTCTTGAGTAGTAGACTGAGGCTCTGAAGTGCATAGGAAATCGGAATCCATCACATTTAGGGGATTTTTAGGTCTAGGTAATGTGGAGAATTCTCTCCGTAGATGTTGTGCTTGAGATGTCTCGTCTTTATTAAATACCTTCAGTTTGTTCCCCAGAATACTTTTACGTATAGACTGGGGTTGATCGTATTTGCATTCCAATAATTTGTTTAAATTTGGATTGCATACTTGTATGGAATCGTTTATATG ]
[+] EMBL CD188807 [ AAATCGGAATCCATCACATTTAGGGGATTTTTAGGTCTAGGTAATGTGGAGAATTCTCTCCGTAGATGTTGTGCTTGAGATGTCTCGTCTTTATT AATACCTTCAGTTTGTTCCCAAG ATAC TTTACGTATAGATTGGGGTTGATCGTATTTGCATTCCAATAATTTGTTTAAATTTGAATTGGATACTTGTATGGAATCGTTTATATGATCATTTGAATGTGTAA ]
[+] EMBL CD088746 [ TAC TTTACGTATAGATTGGGGTTGATCGTATTTGCATTCCAATAATTTGTTTAAATTTGAATTGGATACTTGTACGGAATCGTTTATATGATCATTTGAATGTGTAATGTGTTTCGTCATCAGTGTAGGTAATAGATCTGCTTCGAAACTAGAATTAACTGTTGCACCTTTACATGAGACATTAGATCCATGACGACTGTGGTTTTGATAGTGATGAGAATTTTTCGTATTATGAACGAAGCTTGACAGCTTTGACGGCGATCGGAATCCAAATCCACTATTCCAACCGTCAAATGTTAACCCAGTATTGTTTG AATGACCTGCGCTTG TTGATGAACTATTTTGATTCTTTAAAATATTACTGCTGTCTAAATTGCTATTATTGGGACTAGGGATGGTTGAGGAAGTTGTTCCGTATATTTTCTGTGGTAAATATGACAAGGATGGTGTGGGTAATGTAGGAGGAGGTTCTAAAATAAGCGAAGTTNTATAATTATCTTCTTCTAAAAACTTCTGTAACTCCTCTATATAGCGTTGAGCACATAGATATGCATT ]
[+] EMBL CD195889 [ TAAATTTGAATTGGATACTTGTATGGAATCGTTTATATGATCATTTGAATGTGTAATGTGTTTCGTCATCAGTGTAGGTAGTAGATCTGCTTCGAAACTAGAATTAACTGTTGCACCTTTACATGAGACATTAGATCCATGACGACTGTGGTTTTGATAGTGATGAGAATTTTTCGTATTATGAACGANACTTGACAGCTTTGACGGCGATCGGAATCCAAATCCACTATTCCAACCGTC AATGTTAACCCAGTATTGTTTGNNATGA CTGCGCTTGNNTGATG ACTATT ]
[+] EMBL CD159295 [ TATTTTGATTCTTTAAAATATTACTGCTGTCTAAATTGCTATTATTGGGACTAGGGATGGTTGAGGAAGTTGTTCCGTATATTTTCTGTGGTAAATATGACAAGGATGGTGTGGGTAATGTAGGAGGAGGTTCTAAAATAAGCGAAGTTTTATAATTATCTTCTTCTAAAAACTTCTGTAACTCCTCTATATAGCGTTGAGCACATAGATATGCATTGAGTGTTTCATCCACAGCAAAGGAGTATTCAGATTGTTGAAAATATGCTATTTTATCAATAATCGAGTTGATTTTCGTGAACCATATGGCAGTTGGCTTTCCATTTATACGTGGTTGAGCCACATTCGTATACGTTAAATCAGATAAATATAAACCTAGATAAGGGATACCAGGAAGACTGATAGAATTCATATGTTCACGCTGTCTGCGACAATTATCATTCTGACTAAAAAGCTCCTCCAAACGCCTGTACGCTGCACGA]
consensusID : consensus_8707#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 258 fasta sequence
[ATCTACGGAGGAGAATTCTCCACATTACCTAGACCTAAAANTCCCCTAAATATGTACTTTTTAGGGTTATCTAGTATTAATAGCAGGGTTTTGATTTATGTGCGCTTTTGTTGGGTTTATGAACTGGTGAGTACAATACTGATCGATTGGTGATGCAAAACGATAGAATGTGTCCAGCCAATGACTTTTCACGAAACTTAAACTACCTACTTGTCACATTCATTGACAACATTCAGCTGAATGGTGACGGATTCCGGT]
[+] EMBL AA999551 [ATCTACGGAGGAGAATTCTCCACATTACCTAGACCTAAAANTCCCCTAAATATGTACTTTTTAGGGTTATCTAGTATTAATAGCAGGGTTTTGATTTATGTGCGCTTTTGTTGGGTTTATGAACTGGTGAGTACAATACTGATCGATTGGTGATGCAAAACGATAGAATGTGTCCAGCCAATGACTTTTCACGAAACTTAAACTACCTACTTGTCACATTCATTGACAACATTCAGCTGAATGGTGACGGATTCCGGT]
consensusID : consensus_8707#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 216 fasta sequence
[TGTTTGTTCAAAATCAACAAATGGTCTTGGTGGAATTGGAGGTAAATGTGAACTTTTACAATCAGGAAAAAGAAACTCCAATTCTTGAGTAGTAGACTGAGGTTCTGAAGTGCATAGGAAATCGGAATCCATCACCTAATAGGAAAAAAAACATATAGTGAAGTTTTCGTTTCTGTGAACTTTGCGTTATACTTCAGGTACTCGTTGAGTGCCCTC]
[-] EMBL CD089714 [TGTTTGTTCAAAATCAACAAATGGTCTTGGTGGAATTGGAGGTAAATGTGAACTTTTACAATCAGGAAAAAGAAACTCCAATTCTTGAGTAGTAGACTGAGGTTCTGAAGTGCATAGGAAATCGGAATCCATCACCTAATAGGAAAAAAAACATATAGTGAAGTTTTCGTTTCTGTGAACTTTGCGTTATACTTCAGGTACTCGTTGAGTGCCCTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8707#0 AGTGATTGACTGGGATTTAACTGTTCAGATTTTAATTCCGATCGATTAAGAGTAGAATGT 60
consensus_8707#2 ------------------------------------------------------------
consensus_8707#1 -----------------------------------------------------------A 1
consensus_8707#0 TTTGTTTGTTCAAAATCAACAAATGGTCTTGGTG-GAATTGGAGGTAAATGTGAACTTTT 119
consensus_8707#2 --TGTTTGTTCAAAATCAACAAATGGTCTTGGTG-GAATTGGAGGTAAATGTGAACTTTT 57
consensus_8707#1 TCTACGGAGGAGAATTCTCCACATTACCTAGACCTAAAANTCCCCTAAATATGTACTTTT 61
* ** ** ** ** ** * ** ***** ** ******
consensus_8707#0 -ACAATCAGGAAAAAGAAACTCCAAT-TCTTGAGTAGTAGACTGAGGCTCTGAAGTGCAT 177
consensus_8707#2 -ACAATCAGGAAAAAGAAACTCCAAT-TCTTGAGTAGTAGACTGAGGTTCTGAAGTGCAT 115
consensus_8707#1 TAGGGTTATCTAGTATTAATAGCAGGGTTTTGATTTATG---TGCGCTTTTGTTGGGTTT 118
* * * * * ** ** * **** * * ** * * ** * * *
consensus_8707#0 AGGAAATCG-GAATCCATCACA--TTTAGGGGATTTTTAGGTCTAGGTAATGTG----GA 230
consensus_8707#2 AGGAAATCG-GAATCCATCAC---CTAATAGGA-----AAAAAAACATATAGTG----AA 162
consensus_8707#1 ATGAACTGGTGAGTACAATACTGATCGATTGGTGATGCAAAACGATAGAATGTGTCCAGC 178
* *** * * ** * ** ** * ** * * * ***
consensus_8707#0 GAATTC-TCTCCGTAGATGTTGTGCTTGAGATGTCTCGTCTTTATTAA-TACCTTCAGTT 288
consensus_8707#2 GTTTTCGTTTCTGTGAACTTTGCGTT--ATACTTCAGGTACTCGTTGAGTGCCCTC---- 216
consensus_8707#1 CAATGACTTTTCACGAAACTTAAACTACCTACTTGTCACATTCATTGACAACATTCAGCT 238
* * * * ** * * * * ** * * **
consensus_8707#0 TGTTCCCCAGATACTTTACGTATAGATTGGGGTTGATCGTATTTGCATTCCAATAATTTG 348
consensus_8707#2 ------------------------------------------------------------
consensus_8707#1 GAATGGTGACGGATTCCGGT---------------------------------------- 258
consensus_8707#0 TTTAAATTTGAATTGGATACTTGTATGGAATCGTTTATATGATCATTTGAATGTGTAATG 408
consensus_8707#2 ------------------------------------------------------------
consensus_8707#1 ------------------------------------------------------------
consensus_8707#0 TGTTTCGTCATCAGTGTAGGTAATAGATCTGCTTCGAAACTAGAATTAACTGTTGCACCT 468
consensus_8707#2 ------------------------------------------------------------
consensus_8707#1 ------------------------------------------------------------
consensus_8707#0 TTACATGAGACATTAGATCCATGACGACTGTGGTTTTGATAGTGATGAGAATTTTTCGTA 528
consensus_8707#2 ------------------------------------------------------------
consensus_8707#1 ------------------------------------------------------------
consensus_8707#0 TTATGAACGAAGCTTGACAGCTTTGACGGCGATCGGAATCCAAATCCACTATTCCAACCG 588
consensus_8707#2 ------------------------------------------------------------
consensus_8707#1 ------------------------------------------------------------
consensus_8707#0 TCAAATGTTAACCCAGTATTGTTTGAATGACCTGCGCTTGTTGATGAACTATTTTGATTC 648
consensus_8707#2 ------------------------------------------------------------
consensus_8707#1 ------------------------------------------------------------
consensus_8707#0 TTTAAAATATTACTGCTGTCTAAATTGCTATTATTGGGACTAGGGATGGTTGAGGAAGTT 708
consensus_8707#2 ------------------------------------------------------------
consensus_8707#1 ------------------------------------------------------------
consensus_8707#0 GTTCCGTATATTTTCTGTGGTAAATATGACAAGGATGGTGTGGGTAATGTAGGAGGAGGT 768
consensus_8707#2 ------------------------------------------------------------
consensus_8707#1 ------------------------------------------------------------
consensus_8707#0 TCTAAAATAAGCGAAGTTNTATAATTATCTTCTTCTAAAAACTTCTGTAACTCCTCTATA 828
consensus_8707#2 ------------------------------------------------------------
consensus_8707#1 ------------------------------------------------------------
consensus_8707#0 TAGCGTTGAGCACATAGATATGCATTGAGTGTTTCATCCACAGCAAAGGAGTATTCAGAT 888
consensus_8707#2 ------------------------------------------------------------
consensus_8707#1 ------------------------------------------------------------
consensus_8707#0 TGTTGAAAATATGCTATTTTATCAATAATCGAGTTGATTTTCGTGAACCATATGGCAGTT 948
consensus_8707#2 ------------------------------------------------------------
consensus_8707#1 ------------------------------------------------------------
consensus_8707#0 GGCTTTCCATTTATACGTGGTTGAGCCACATTCGTATACGTTAAATCAGATAAATATAAA 1008
consensus_8707#2 ------------------------------------------------------------
consensus_8707#1 ------------------------------------------------------------
consensus_8707#0 CCTAGATAAGGGATACCAGGAAGACTGATAGAATTCATATGTTCACGCTGTCTGCGACAA 1068
consensus_8707#2 ------------------------------------------------------------
consensus_8707#1 ------------------------------------------------------------
consensus_8707#0 TTATCATTCTGACTAAAAAGCTCCTCCAAACGCCTGTACGCTGCACGA 1116
consensus_8707#2 ------------------------------------------------
consensus_8707#1 ------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||