These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8712#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 594 fasta sequence [TCTTTCCAAAATAAAGGTGATAGCTTAAAACGTACATTCAAGATAACTCATCTGATACTTCCGAATGGGAAGATATCTGTGTATTATGATAACATGACTCAAGAATTCGGACTACAATTCCAATCGCGATTAAGCGGTTCATTAGCGTGTGAACGAGGTGAGAGAAAGTTACATACATTTGTTGTTAAAAAATGGATCAAAAGTGGAACGTTAGTGGAGTACGAAGTTTCTGGTGATTGTCCAAAACACGATTCGATGGAGATATGTCAAGAATCAAAGACATCGAATACAAAGTGCATGTGGTATGAAAAAGCAAATATGTGCATCGTCAGCACTGATAAGGATATTGATGACTTCAAAGTAAATAGTTGCCAGATTGGAAATAGCTCGAATGTCCACGTTTCGATCACACCAATCGTTGTGGAAGA-AGCTACAACAACTC-CAAGGATAAGTGAATCTNACAACGGACACGGGAAATCAAATCATTACCTACACATTGTCATACCTGTAG-TATCTGTTTCTCGGGTGTGTGCAGTGGCTGTGTCATATGCCTATGGTTGTACAGGAAAAAGAAATGTATGCCACCGCTTTCAT] [+] EMBL CD165429 [TCTTTCCAAAATAAAGGTGATAGCTTAAAACGTACATTCAAGATAACTCATCTGATACTTCCGAATGGGAAGATATCTGTGTATTATGATAACATGACTCAAGAATTCGGACTACAATTCCAATCGCGATTAAGCGGTTCATTAGCGTGTGAACGAGGTGAGAGAAAGTTACATACATTTGTTGTTAAAAAATGGATCAAAAGTGGAACGTTAGTGGAGTACGAAGTTTCTGGTGATTGTCCAAAACACGATTCGATGGAGATATGTCAAGAATCAAAGACATCGAATACAAAGTGCATGTGGTATGAAAAAGCAAATATGTGCATCGTCAGCACTGATAAGGATACTGATGACTTCAAAGTAAATAGTTGCCAGATTGGAAATAGCTCGAATGTCCACGTTTCGATCACACCA ] [+] EMBL AI764883 [ AAAGTGCATGTGGTATGAAAAAGCAAATATGTGCATCGTCAGCACTGATAAGGATATTGATGACTTCAAAGTAAATAGTTGCCAGATTGGAAATAGCTCGAATGTCCACGTTTCGATCACACCAATCGTTGTGGAAGA AGCTACAACAACTC CAAGGATAAGTGAATCTNACAACGGACACGGGAAATCAAATCATTACCTACACATTGTCATACCTGTAG TATCTGTTTCTCGGGTGTGTGCAGTGGCTGTGTCATATGCCTATGGTTGTACAGGAAAAAGAAATGTATGCCACCGCTTTCAT] [+] EMBL AW587523 [ AAAGTGCATGTGGTATGAAAAAGCAAATATGTGCATCGTCAGCACTGATAAGGATATTGATGACTTCAAAGTAAATAGTTGCCAGATTGGAAATAGCTCGAATGTCCACGTTTCGATCACACCAATCGTTGTGGAAGACGGCTTCAACAACTCYGAAGGATAAGTGAATCTGACAACGGACACGGGAAATCAAATCATTACCGTCCCATTGTCATACCTGTAGTTATCTGTTTCTCGGTTGTGTGCAGTGGCTGTGTCATATGCCTCTGGTTGTCCAGGAGAAAG ] consensusID : consensus_8712#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 460 fasta sequence [GAAGAACATCGATTACAATCGCATTTATACAGTTCATTAGCGTGTGAAGGAGATCAAAAAGGCGTTGACATATTTGTTGGTAAAATTTGGATCAAAAGTGGAACTTTAGTGGAGTATGAAGTTTCCGGTGTATATAGTTGCCAGATTGAAATAGCTCGAATGTCAATGTTTCGACCACATCAATCCTTGTGGAAGAAGCTGGAACAACTCCAGGGATAAATGAATCTGAGTTAAGAAATGAATTGGAGAGTACTGATCAACAATCTGAATCCCATTTGAATATGACGACAGAAACGACTGGAGACAATGGACATAGGAAGTCATATAATTCCTTACACATTGTCATACCTGTAGTTATCTGTTTCTTGGTTGTGTGCGGTGGCTGTGTCATAGGCCTATGGTTGTACAGGAAAAACAAATGTATGCAATGGCTTTCATAAACGACTTATCGCTTGTTTTC] [+] EMBL CD152818 [GAAGAACATCGATTACAATCGCATTTATACAGTTCATTAGCGTGTGAAGGAGATCAAAAAGGCGTTGACATATTTGTTGGTAAAATTTGGATCAAAAGTGGAACTTTAGTGGAGTATGAAGTTTCCGGTGTATATAGTTGCCAGATTGAAATAGCTCGAATGTCAATGTTTCGACCACATCAATCCTTGTGGAAGAAGCTGGAACAACTCCAGGGATAAATGAATCTGAGTTAAGAAATGAATTGGAGAGTACTGATCAACAATCTGAATCCCATTTGAATATGACGACAGAAACGACTGGAGACAATGGACATAGGAAGTCATATAATTCCTTACACATTGTCATACCTGTAGTTATCTGTTTCTTGGTTGTGTGCGGTGGCTGTGTCATAGGCCTATGGTTGTACAGGAAAAACAAATGTATGCAATGGCTTTCATAAACGACTTATCGCTTGTTTTC] consensusID : consensus_8712#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 451 fasta sequence [TGGGGTGGCCCGTGGCTTTGGAATCGCTATTAAGCGGTTCAATAGAGTGCGATGGAGAAGGGTGAGCGGGACTTTGAAATATCTGTTGATGCAAAATGGATCAAAAGTGGAACGTTAGTGGAGTATAAAGTTTCCGGTGATTGTCCAAAATACAATACGACTAAAACATGTCAAGACTCCAAAACACTGAATACAAAGTGCACTTGGCATGAAAAAGCAAATATGTGCATCGTCAGCACTGATATGGATATTGATGACTTCAAAGTAAATAGTTGCCAGATTGAAAATAGCTCGAATGTTAACGTTTCGACCACACCAATCGTTGTGGAACAAGCTACAACAACTCAAAGGACAAGTGAATCTGAGTTAAGAAATGAATTGGAGAGAACTGATCAACAATCTGAATCTCATTTGAATAGCTCGAATGTTAACGTTTCAACCACACCAATCG] [-] EMBL CD165766 [TGGGGTGGCCCGTGGCTTTGGAATCGCTATTAAGCGGTTCAATAGAGTGCGATGGAGAAGGGTGAGCGGGACTTTGAAATATCTGTTGATGCAAAATGGATCAAAAGTGGAACGTTAGTGGAGTATAAAGTTTCCGGTGATTGTCCAAAATACAATACGACTAAAACATGTCAAGACTCCAAAACACTGAATACAAAGTGCACTTGGCATGAAAAAGCAAATATGTGCATCGTCAGCACTGATATGGATATTGATGACTTCAAAGTAAATAGTTGCCAGATTGAAAATAGCTCGAATGTTAACGTTTCGACCACACCAATCGTTGTGGAACAAGCTACAACAACTCAAAGGACAAGTGAATCTGAGTTAAGAAATGAATTGGAGAGAACTGATCAACAATCTGAATCTCATTTGAATAGCTCGAATGTTAACGTTTCAACCACACCAATCG] consensusID : consensus_8712#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 360 fasta sequence [ATGGTTACATGTTTTGTTATCCACTTATCTTTTGTTTGATAATTTGAAATGCAATCAACTTATTCCTTTCACTGAAGATTGTCCAAAACACAAAACGGCTGAAAAATGTCAAGACTCCAAAACACCGAATAGAAAGTGCATGTGGTATGAAAAAGCAAATATGTGCGTCGTCAGTACTGATAAGGATATTGATGACTCCAAAGTAAGTAGTTGCCAGATTGGAGTAAGTAATTGGTAGACATAACAGGTTGTTTTTAATATTACCACAATCCATATTCTAAATCTATTTACTAGAGAGAACATTTTATTGCTACGAATAAGTAGTGATTTGTATAGTTCCCTTAGTTCATAAATCAATGT] [+] EMBL CD117874 [ATGGTTACATGTTTTGTTATCCACTTATCTTTTGTTTGATAATTTGAAATGCAATCAACTTATTCCTTTCACTGAAGATTGTCCAAAACACAAAACGGCTGAAAAATGTCAAGACTCCAAAACACCGAATAGAAAGTGCATGTGGTATGAAAAAGCAAATATGTGCGTCGTCAGTACTGATAAGGATATTGATGACTCCAAAGTAAGTAGTTGCCAGATTGGAGTAAGTAATTGGTAGACATAACAGGTTGTTTTTAATATTACCACAATCCATATTCTAAATCTATTTACTAGAGAGAACATTTTATTGCTACGAATAAGTAGTGATTTGTATAGTTCCCTTAGTTCATAAATCAATGT] [+] EMBL CD118116 [ATGGTTACATGTTTTGTTATTCACTTATCTTTTGTTTGATAATTTGAAATGCAATCAACTTATTCCTTTCACTGAAGATTGTCCAAAACACAAAACGGCTGAAAAATGTCAAGACTCCAAAACACCGAATAGAAAGTGCATGTG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8712#2 ------------------------------------------------------------ consensus_8712#3 ------------------------------------------------------------ consensus_8712#0 TCTTTCCAAAATAAAGGTGATAGCTTAAAACGTACATTCAAGATAACTCATCTGATACTT 60 consensus_8712#1 ------------------------------------------------------------ consensus_8712#2 ----------------------------------------TGGGGTGGCCCGTGGCTTTG 20 consensus_8712#3 ------------------------------------------------------------ consensus_8712#0 CCGAATGGGAAGATATCTGTGTATTATGATAACATGACTCAAGAATTCGGACTACAATTC 120 consensus_8712#1 ------------------------------------------GAA---GAACATCGATTA 15 consensus_8712#2 GAATCGCTATTAAGCGGTTCAATAGAGTGCGATGGAGAAGGGTGAGCGGGACTTTGAAAT 80 consensus_8712#3 -----------------------------------------ATG-GTTACATGTTTTGTT 18 consensus_8712#0 CAATCGCGATTAAGCGGTTCATTAGCGTGTGAACGAG----GTGAGAGAAAGTTACATAC 176 consensus_8712#1 CAATCGCATTTATACAGTTCATTAGCGTGTGAAGGAG----ATCAAAAAGGCGTTGACAT 71 * * consensus_8712#2 ATCTGTTGATGCAAAATGGATCAAAAGTGGAACGTTAGTGGAGTATAAAGTTT-CCGGTG 139 consensus_8712#3 ATCCACTTATCTTTTGTTTGATAATT-TGAAATGCAATCAACTTATTCCTTTCACTGAAG 77 consensus_8712#0 ATTTGTTGTTAAAAAATGGATCAAAAGTGGAACGTTAGTGGAGTACGAAGTTT-CTGGTG 235 consensus_8712#1 ATTTGTTGGTAAAATTTGGATCAAAAGTGGAACTTTAGTGGAGTATGAAGTTT-CCGGTG 130 ** * * * ** ** ** * ** ** * * * consensus_8712#2 ATTGTCCAAAATACAATACGACTAAAACATGTCAAGACTCCAAAACACTGAATACAA-AG 198 consensus_8712#3 ATTGTCCAAAACACAAAACGGCTGAAAAATGTCAAGACTCCAAAACACCGAATAGAA-AG 136 consensus_8712#0 ATTGTCCAAAACACGATTCGATGGAGATATGTCAAGAATCAAAGACATCGAATACAA-AG 294 consensus_8712#1 TATAT---AGTTGCCA---GATTGAAATAGCTCGAATGTCAATG-TTTCGACCACATCAA 183 * * * * * * * * * ** * ** * ** * * * consensus_8712#2 TGCACTTGGCATGAAAAAGCAAATATGTGCATCGTCAGCACTGATATGGATATTGATGAC 258 consensus_8712#3 TGCATGTGGTATGAAAAAGCAAATATGTGCGTCGTCAGTACTGATAAGGATATTGATGAC 196 consensus_8712#0 TGCATGTGGTATGAAAAAGCAAATATGTGCATCGTCAGCACTGATAAGGATATTGATGAC 354 consensus_8712#1 TCCTTGTG----GAAGAAGCTGG-------------AACAACTCCAGGGATA--AATGAA 224 * * ** *** **** * * * ***** **** consensus_8712#2 TTCAAAGTAAATAGTTGCCAGATTGAAAATAGCTCGAATGTTAACGTTTCGACCACACCA 318 consensus_8712#3 TCCAAAGTAAGTAGTTGCCAGATTGGAGTAAG---------TAATTGGTAGACATAACAG 247 consensus_8712#0 TTCAAAGTAAATAGTTGCCAGATTGGAAATAGCTCGAATGTCCACGTTTCGATCACACCA 414 consensus_8712#1 TCTGAGTTAAGAAAT----GAATTGGAGAGTACTGA------------TCAACAATCTGA 268 * * *** * * **** * * * consensus_8712#2 ATCGTTGTGGAACAAGCTACAACAACTCAAAGGACAAGTGAATCTGAGTTAAGA----AA 374 consensus_8712#3 GTTGTTTTTAAT---ATTACCACAATCCATATTCTAAATCTATTT-ACTAGAGA----GA 299 consensus_8712#0 ATCGTTGTGGAAGAAGCTACAACAACTCCAAGGATAAGTGAATCTNACAACGGACACGGG 474 consensus_8712#1 ATCCCATTTGAA-----TATGACGAC---AGAAACGACTGGA---GACAATGGACATAGG 317 * * * ** ** * * * * * ** consensus_8712#2 TGAATTGGAGAGAACTGATCAACAATC-TGAATCTCATTTGAATAGCTCGAATGTTAACG 433 consensus_8712#3 ACATTTTATTGCTACGAATAAGTAGTGATTTGTATAGTTCCCTTAGTTCATAAATCAATG 359 consensus_8712#0 AAATCAAATCATTACCTACACATTGTCATACCTGTAGT--ATCTGTTTCTCGGGTGTGTG 532 consensus_8712#1 AAGTCATATAATTCCTTACACATTGTCATACCTGTAGTT-ATCTGTTTCTTGGTTGTGTG 376 * * * * * * * * ** * * consensus_8712#2 TTTCAACCACACCAATCG------------------------------------------ 451 consensus_8712#3 T----------------------------------------------------------- 360 consensus_8712#0 CAGTGGCTGTGTCATATGCCTATGGTTGTACAGGAAAAAGAAATGTATGCCACCGCTTTC 592 consensus_8712#1 CGGTGGCTGTGTCATAGGCCTATGGTTGTACAGGAAAAACAAATGTATGCAATGGCTTTC 436 consensus_8712#2 ------------------------ consensus_8712#3 ------------------------ consensus_8712#0 AT---------------------- 594 consensus_8712#1 ATAAACGACTTATCGCTTGTTTTC 460 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||