These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8714#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 931 fasta sequence [GACTTTGAAAAAAGGTCTCGGTGGGGAAACTCGTCCCAGTCATGGTGATTCTGTCGTTGTAAATTACAAATGTTGGCTGGAAGATGGAACGCTTGTTGACGACGTCGAAGATGTGAAAATGGTCCTTGGTGATGGTGATATAATACATGCATTTGACCTCTCTATTCCACTGGCTGAGCACAAAGAGATATTCCAAATGACAACTGACTCCCGGTTCGCTTATGGATCTCGTGGACGATGCAGTTTTGGCAGTTAGAGGTACTCATCAACTTTAGATACTTCTCAATTTTCTTAGGGATCCTGGTATCCCATCAGGGGCAAAGTTAACTTATCGCATTGAAGTTTTAAAAGTTGATGACCCTCCTTGTTATGCTAGTATGTCGAATTCGGAAAGACTTGCAGTTGCTAATCAGAAGAAAGACAGAGGCAACTATTACTACAGGAGAGAAGAATTTGCATTCGCTATCGACAGCTATAACAAAGCATTGAAAATTTTACAATTGCCTCCTGTGATTCCTACCCGGTCTTCAGAAGAGAAATTTCCGGAAACCGACTGTTCAGCAGAGCTTATTAATGATGCAAAGTTGAAATTAGAAAATAATCTCGCAGCTGCTCAGTTAAAGGTAGAAGCATACGATGCCGCTATAATGTCTTGTGATGCTGTCTTGCAAAGCGATCCACAAAATATTAAGGCTTTATTCAGGAAAGGAAAGGCTCTTTTGGAAATGAACGAAGTAGATGATGCTATCCCAATCCTCCAGAAAGTACTAACAATATCCCCAGGCTCACAAATGGCTAGTGTTGAGTTAGCTCGTGCCCAAGCTGTACGACAGAAAGAACGAGAGCATTGGTCACGGTCTGTTAACCGTAGGTTCCCGAAAACTAAACAAAATAAGAATATAAAACTGTCCGCTGCATCCAGAGTTAAACT] [+] EMBL CD161920 [GACTTTGAAAAAAGGTCTCGGTGGGGAAACTCGTCCCAGTCATGGTGATTCTGTCGTTGTAAATTACAAATGTTGGCTGGAAGATGGAACGCTTGTTGACGACGTCGAAGATGTGAAAATGGTCCTTGGTGATGGTGATATAATACATGCATTTGACCTCTCTATTCCACTGGCTGAGCACAAAGAGATATTCCAAATGACAACTGACTCCCGGTTCGCTTATGGATCTCGTGGACGATGCAGTTTTGGCAGTTAGAGGTACTCATCAACTTTAGATACTTCTCAATTTTCTTAGGGATCCTGGTATCCCATCAGGGGCAAAGTTAACTTATCGCATTGAAGTTTTAAAAGTTGATGACCCTCCTTGTTATGCTAGTATGTCGAATTCGGAAAGACTTGCAGTTGCTAATCAGAAGAAAGACAGAGGCAACTATTACTACAGGAGAGAAGAATTTGCATTCGCTATCGACAGCTATAACAAAGCATTGAAAATTTTACAATTGCCTCCTGTGATTCCTACCCGGTCTTCAGAAGAGATATTTCCGGANACCGACTGTTCAGCAGAGCTTAT ] [+] EMBL CD062384 [ tggacGGGATCCTGGTATCCCATCAGGGGCAAAGTTAACTTATCGCATTGAAGTTTTAAAAGTTGATGACCCTCCTTGTTATGCTAGTATGTCGAATTCGGAAAGACTTGCAGTTGCTAATCAGAAGAAAGACAGAGGCAACTATTACTACAGGAGAGAAGAATTTGCATTCGCTATCGACAGCTATAACAAAGCATTGAAAATTTTACAATTGCCTCCTGTGATTCCTACCCGGTCTTCAGAAGAGAAATTTCCGGAAACCGACTGTTCAGCAGAGCTTATTAATGATGCAAAGTTGAAATTAGAAAATAATCTCGCAGCTGCTCAGTTAAAGGTAGAAGCATACGATGCCGCTATAATGTCTTGTGATGCTGTCTTGCAAAGCGATC ] [+] EMBL CD082223 [ tacgaggCGCATTGAAGTTTTAAAAGTTGATGACCCTCCTTGTTATGCTAGTATGTCCAATTCGGAAAGACTTGCAGTTGCTAATCAGAAGAAAGACAGAGGCAACTATTACTACAGGAGAGAAGAATTTGCATTCGCTATCGACAGCTATAACAAAGCATTGAAAATTTTACAATTGCCTCCTGTGATTCCTACCCGGTCTTCAGAAGAGAAATTTCCGGAAACCGACTGTTCAGCAGAGCTTATTAATGATGCAAAGTTGAAATTAGAAAATAATCTCGCAGCTGCTCAGTTAAAGGTAGAAGCATACGATGCCGCTATAATGTCTTGTGATGCTGTCTTGCAAAGCGATCCACAAAATATTAAGGCTTTATTCAGGAAAGGAAAGGCTCTTTTGGAAATGAACGAAGTAGATGATGCTATCCCAATCCTCCAGAAAGTACTAACAATATCCCCAGGCTCACAAATGGCTAGTGTTGAGTTAGCTCGTGCCCAAGCTGTACGACAGAAAGAACGAGAGCATTGGTCACGGTCTGTTAACCGTAGGTTCCCGAAAACTAAACAAAATAAGAATATAAAACTGTCCGCTGCATCCAGAGTTAAACT] [-] EMBL CD189589 [ AGCTATAACAAAGCATTGAAAATTTTACAATTGCCTCCTGTGATTCCTACCCGGTCTTCAGAAGAGAAATTTCCGGAAACCGACTGTTCAGCAGAGCTTATTAATGATGCAAAGTTGAAATTAGAAAATAATCTCGCAGCTGCTCAGTTAAAGGTAGAAGCATACGATGCCGCTATAATGTCTTGTGATGCTGTCTTGCAAAGCGATCCACAAAATATTAAGGCTTTATTCAGGAAAGGAAAGGCTCTTTTGGAAATGAACGAAGTAGATGATGCTATCCCAATCCTCCAGAAAGTACTA ] [+] EMBL CD121047 [ AAAGGCTCTTTTGGAAATGAACGAAGTGGATGATGCTATCCCAATCCTCCAGAAAGTACTAACAATATCCCCAGGCTCACAAATGGCTAGTGTTGAGTT ] consensusID : consensus_8714#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 553 fasta sequence [CGCAAGAAAGGTCAAAAGTATGACCACCAGTTGAAAAGTTCCAATGTGCAACAGTCTTCTGAAAAACTAGCCACAGAAGGCAGCACAAGTAAATCCACGGACGGTGTTAAATTACCGGAGTCACCTGATCAAGATGTTGATGCTAGTAGTGGGGAGACTATCGATGTTTTAGGGAATGGTCTCATCATTAAAAAGACTTTGAAAAAAGGTCTCGGTGGGGAAACTCGTCCCAGTCATGGTGATTCTGTCGTTGTAAATTACAAATGTTGGCTGGAAGATGGAACGCTTGTTGACGACGTCGAAGATGTGAAAATGGTCCTTGGTGATGGTGATATAATACATGCATTTGACCTCTCTATTCCACTGGCTGAGCACAAAGAGATATTCGAAATGACAACTGACTCCCGGTTCGCTTATGGATCTCGTGGACGGGATCCTGGTATCCCATCAGGGGCAAAGTTAACTTATCGCATTGAAGTTTTAAAAGTTGATGACCCTCCTTGTTATGCTAGTATGTCGAATTCGGAAAGACTTGCAGTTGCTAATCAGAAGA] [+] EMBL AI975064 [CGCAAGAAAGGTCAAAAGTATGACCACCAGTTGAAAAGTTCCAATGTGCAACAGTCTTCTGAAAAACTAGCCACAGAAGGCAGCACAAGTAAATCCACGGACGGTGTTAAATTACCGGAGTCACCTGATCAAGATGTTGATGCTAGTAGTGGGGAGACTATCGATGTTTTAGGGAATGGTCTCATCATTAAAAAGACTTTGAAAAAAGGTCTCGGTGGGGAAACTCGTCCCAGTCATGGTGATTCTGTCGTTGTAAATTACAAATGTTGGCTGGAAGATGGAACGCTTGTTGACGACGTCGAAGATGTGAAAATGGTCCTTGGTGATGGTGATATAATACATGCATTTGACCTCTCTATTCCACTGGCTGAGCACAAAGAGATATTCGAAATGACAACTGACTCCCGGTTCGCTTATGGATCTCGTGGACGGGATCCTGGTATCCCATCAGGGGCAAAGTTAACTTATCGCATTGAAGTTTTAAAAGTTGATGACCCTCCTTGTTATGCTAGTATGTCGAATTCGGAAAGACTTGCAGTTGCTAATCAGAAGA] consensusID : consensus_8714#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 305 fasta sequence [GTAAATTACAAATGTTGGCTGGAAGATGGAACGCTTGTTGACGACGTCGAAGATGTGAAAATGGTCCTTGGTGATGGTGATATAATACATGCATTTGACCTCTCTATTCCACTGGCTGAGCACAAAGAGATATTCGAAATGACAACTGACTCCCGGTTCGCTTATGGATCTCGTGGACGGTAGGTTGTGAGAAATAACTCTCCTACAAGATTTGTTCCGAAATCGCTCCATGCTGTAATGTTTGAGGTTCTGAATTTTCTCAAGTGTTATGTAAGTATAAAATACTGACGACCTTGGGCGACTTA] [+] EMBL CD190465 [GTAAATTACAAATGTTGGCTGGAAGATGGAACGCTTGTTGACGACGTCGAAGATGTGAAAATGGTCCTTGGTGATGGTGATATAATACATGCATTTGACCTCTCTATTCCACTGGCTGAGCACAAAGAGATATTCGAAATGACAACTGACTCCCGGTTCGCTTATGGATCTCGTGGACGGTAGGTTGTGAGAAATAACTCTCCTACAAGATTTGTTCCGAAATCGCTCCATGCTGTAATGTTTGAGGTTCTGAATTTTCTCAAGTGTTATGTAAGTATAAAATACTGACGACCTTGGGCGACTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8714#0 ------------------------------------------------------------ consensus_8714#1 CGCAAGAAAGGTCAAAAGTATGACCACCAGTTGAAAAGTTCCAATGTGCAACAGTCTTCT 60 consensus_8714#2 ------------------------------------------------------------ consensus_8714#0 ------------------------------------------------------------ consensus_8714#1 GAAAAACTAGCCACAGAAGGCAGCACAAGTAAATCCACGGACGGTGTTAAATTACCGGAG 120 consensus_8714#2 ------------------------------------------------------------ consensus_8714#0 ------------------------------------------------------------ consensus_8714#1 TCACCTGATCAAGATGTTGATGCTAGTAGTGGGGAGACTATCGATGTTTTAGGGAATGGT 180 consensus_8714#2 ------------------------------------------------------------ consensus_8714#0 --------------GACTTTGAAAAAAGGTCTCGGTGGGGAAACTCGTCCCAGTCATGGT 46 consensus_8714#1 CTCATCATTAAAAAGACTTTGAAAAAAGGTCTCGGTGGGGAAACTCGTCCCAGTCATGGT 240 consensus_8714#2 ------------------------------------------------------------ consensus_8714#0 GATTCTGTCGTTGTAAATTACAAATGTTGGCTGGAAGATGGAACGCTTGTTGACGACGTC 106 consensus_8714#1 GATTCTGTCGTTGTAAATTACAAATGTTGGCTGGAAGATGGAACGCTTGTTGACGACGTC 300 consensus_8714#2 ------------GTAAATTACAAATGTTGGCTGGAAGATGGAACGCTTGTTGACGACGTC 48 ************************************************ consensus_8714#0 GAAGATGTGAAAATGGTCCTTGGTGATGGTGATATAATACATGCATTTGACCTCTCTATT 166 consensus_8714#1 GAAGATGTGAAAATGGTCCTTGGTGATGGTGATATAATACATGCATTTGACCTCTCTATT 360 consensus_8714#2 GAAGATGTGAAAATGGTCCTTGGTGATGGTGATATAATACATGCATTTGACCTCTCTATT 108 ************************************************************ consensus_8714#0 CCACTGGCTGAGCACAAAGAGATATTCCAAATGACAACTGACTCCCGGTTCGCTTATGGA 226 consensus_8714#1 CCACTGGCTGAGCACAAAGAGATATTCGAAATGACAACTGACTCCCGGTTCGCTTATGGA 420 consensus_8714#2 CCACTGGCTGAGCACAAAGAGATATTCGAAATGACAACTGACTCCCGGTTCGCTTATGGA 168 *************************** ******************************** consensus_8714#0 TCTCGTGGACGATGCAGTTTTGGCAGTTAGAGGTACTCATCAACTTTAGATACTTCTCAA 286 consensus_8714#1 TCTCGTGGACG------------------------------------------------- 431 consensus_8714#2 TCTCGTGGACGGTAGGTTGTGAGAAAT--------------------------------- 195 *********** consensus_8714#0 TTTTCTTAGGGATCCTGGTATCCCATCAGGGGCAAAGTTAACTTATCGCATTGAAGTTTT 346 consensus_8714#1 ---------GGATCCTGGTATCCCATCAGGGGCAAAGTTAACTTATCGCATTGAAGTTTT 482 consensus_8714#2 ----------AACTCTCCTACAAGATTTGTTCCGAAATCGCTCCAT-GCTGTAATGTTTG 244 * ** ** ** * * ** * ** ** * * **** consensus_8714#0 AAAAGTTGATGACCCTCCT-TGTTATGCTAGTATGTCGAATTCGGAAAGACTTGCAGTTG 405 consensus_8714#1 AAAAGTTGATGACCCTCCT-TGTTATGCTAGTATGTCGAATTCGGAAAGACTTGCAGTTG 541 consensus_8714#2 AGGTTCTGAATTTTCTCAAGTGTTATGTAAGTATA--AAATACTGACGACCTTG-GGCGA 301 * *** *** ******* ***** *** * ** **** * consensus_8714#0 CTAATCAGAAGAAAGACAGAGGCAACTATTACTACAGGAGAGAAGAATTTGCATTCGCTA 465 consensus_8714#1 CTAATCAGAAGA------------------------------------------------ 553 consensus_8714#2 CTTA-------------------------------------------------------- 305 ** * consensus_8714#0 TCGACAGCTATAACAAAGCATTGAAAATTTTACAATTGCCTCCTGTGATTCCTACCCGGT 525 consensus_8714#1 ------------------------------------------------------------ consensus_8714#2 ------------------------------------------------------------ consensus_8714#0 CTTCAGAAGAGAAATTTCCGGAAACCGACTGTTCAGCAGAGCTTATTAATGATGCAAAGT 585 consensus_8714#1 ------------------------------------------------------------ consensus_8714#2 ------------------------------------------------------------ consensus_8714#0 TGAAATTAGAAAATAATCTCGCAGCTGCTCAGTTAAAGGTAGAAGCATACGATGCCGCTA 645 consensus_8714#1 ------------------------------------------------------------ consensus_8714#2 ------------------------------------------------------------ consensus_8714#0 TAATGTCTTGTGATGCTGTCTTGCAAAGCGATCCACAAAATATTAAGGCTTTATTCAGGA 705 consensus_8714#1 ------------------------------------------------------------ consensus_8714#2 ------------------------------------------------------------ consensus_8714#0 AAGGAAAGGCTCTTTTGGAAATGAACGAAGTAGATGATGCTATCCCAATCCTCCAGAAAG 765 consensus_8714#1 ------------------------------------------------------------ consensus_8714#2 ------------------------------------------------------------ consensus_8714#0 TACTAACAATATCCCCAGGCTCACAAATGGCTAGTGTTGAGTTAGCTCGTGCCCAAGCTG 825 consensus_8714#1 ------------------------------------------------------------ consensus_8714#2 ------------------------------------------------------------ consensus_8714#0 TACGACAGAAAGAACGAGAGCATTGGTCACGGTCTGTTAACCGTAGGTTCCCGAAAACTA 885 consensus_8714#1 ------------------------------------------------------------ consensus_8714#2 ------------------------------------------------------------ consensus_8714#0 AACAAAATAAGAATATAAAACTGTCCGCTGCATCCAGAGTTAAACT 931 consensus_8714#1 ---------------------------------------------- consensus_8714#2 ---------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||