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Schistosoma mansoni
cluster # 8720 cluster # 8720       Sequences # 7       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8720#0 length = 692 sequences # 4  
consensus_8720#1 length = 670 sequences # 3  

consensusID : consensus_8720#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 692
fasta sequence
                              [TCGGCACGAGGGCCTTCTACCACTGGTGTCCCGGAACGGCATATTGTTCAGAAACATGTCAGGTTTGAACACTGGACAGCTCAACATAATCGCGATTGCCGTCGTCGAACAGAGTCACAGCAGCAACAGCAAATGCGTAGCTAGCATAGTATAGACCAAGCGTATATATATATATGCTCTTCAACTCAGTTTCATTCCCTCC-AACCCCGTTTCTAGTCGTTCTTAACTAACTTCTAAGAATTAAGTTTTTTAAAGTTTGGCAGCCGTATTAGTGATGGAAGAATCAATTTTACCCTATTATTATTATTCGCGTCAGAGTCTCTTGGACTGTTGAGCGCCGCTCAATCACCGTTTTTTGCTTCATAATATGTTTGATAGCGTATAGTCTTTCTTTATCTCACGATGGCATTGTGATAATAACGCGTTCTTAGAATTTTATCGTTATTGTAAGTAGAACTAGTGATACTGAAACTAGTAATCATGAGCTTTCTCACAACTATTCTTTCTTGACAGACCTAGGACTGCGCTAAACCCAGGAGCCAATAAATTTATTTCATTCATGATACTTCTAAATAGATTTAATATTCCTTCCTTAAACTGATTATTTGCAGATTGGTGAATTTTCCTTAGTTCACTGCAATTATTAACTTCGTTTATGACATTAGTGCTGTGAAGCGCACNATACATCATAC]

[+] EMBL CD079975             [TCGGCACGAGGGCCTTCTACCACTGGTGTCCCGGAACGGCATATTGTTCAGAAACATGTCAGGTTTGAACACTGGACAGCTCAACATAATCGCGATTGCCGTCGTCGAACAGAGTCACAGCAGCAACAGCAAATGCGTAGCTAGCATAGTATAGACCAAGCGTATATATATATATGCTCTTCAACTCAGTTTCATTCCCTCC AACCCCGTTTCTAGTCGTTCTTAACTAACTTCTAAGAATTAAGTTTTTTAAAGTTTGGCAGCCGTATTAGTGATGGAAGAATCAATTTTACCCTATTATTATTATTCGCGTCAGAGTCTCTTGGACTGTTGAGCGCCGCTCAATCACCGTTTTTTGCTTCATAATATGTTTGATAGCGTATAGTCTTTCTTTATCTCACGATGGCATTGTGATAATAACGCGTTCTTAGAATTTTATCGTTATTGTAAGTAGAACTAGTGATACTGAAACTAGTAATCATGAGCTTTCTCACAACTATTCTTTCTTGACAGACCTAGGACTGCGCTAAACCCAGGAGCCAATAAATTTATTTCATTCATGATACTTCTAAATAGATTTAATATTCCTTCCTTAAACTGATTATTTGCAGATTGGTGAATTTTCCTTAGTTCACTGCAATTATTAACTTCGTTTATGACATTAGTGCTGTGAAGCGCACNATACATCATAC]
[+] EMBL CD129529             [                                                          TCA GTTTGAACACTGGACAGCTCAACATAATCGCGATTGCCGTCGTCGAACAGAGTCACAGCAGCAACAGCAAATTCGTAGCTAGCATAGTATAGACCAAGCGTATATATATATATGCTCTTCAACTCAGTTTCATTCCCTCC AACCCCGTTTCTAGTCGTTCTTAACTAACTTCTAAGAATTAAGTTTTTTAAAGTTTGGCAGCCGTATTAGTGATGGAAGAATCAATTTTACCCTATTATTATTATTCGCGTCAGAGTCTCTTGGACTGTTGAGCGCCGCTCAATCACCGTTTTTTGCTTCATAATATGTTTGATAGCGTATAGTCTTTCTTTATCTCACGATGGCATTGTGATAATAACGCGTTCTTAGAATTTTATCGTTATTGTAAGTAGAACTAGTGATACTGAAACTAGTAATCATGAGCTTTCTCACAACTATTCTTTCTTGACAGACCTAGGACTGCGCTAAACCCAGGAGCCAATAAATTTATTTCATTCATGATACTTCTAAATAGATTTAATATTCCTTCCTTAAACTGATTATTTGCAGATTGGTGAATTTTCCTTAGTTCACTGCAATTATTAACTTCGTTTATGACATTAGTGCTGTGA                   ]
[-] EMBL CD188830             [                                                                                                                                                                                               TCATTCCCTCCAAACCCCGTTTCTAGTCGTTCTTAACTAACTTCTAAGAATTAAGTTTTTTAAAGTTTGGCAGCCGTATTAGTGATGGAAGAATCAATTTTACCCTATTATTATTATTCGCGTCAGAGTCTCTTGGACTGTTGAGCGCCGCTCAATCACCGTTTTTTGCTTCATAATATGTTTGATAGCGTATAGTCTTTCTTTATCTCACGATGGCATTGTGATAATAACGCGTTCTTAGAATTTTATCGTTATTGTAAGTAGAACTAGTGATACTGAAACTAGTAATCATGAGCTTTCTCACAACTATTCTTTCTTGACAGACCTAGGACT                                                                                                                                                                         ]
[-] EMBL CD090637             [                                                                                                                                                                                                                                                                                                                                                                                                        TTTTTCTCNCGATGGCATTGTGATAATAACGCGTTCTTAGAATTTTATCGTTATTGTAAGTAGAAATAGTGATACTGAAACTAGTAATCATGAGCTTTCTCNCNNCTATTCTTTCTTGACAGGCCTAGGNCTGCGCTAAACCCAGGAGCCAATAAATTTATTTCATTCATGATACTTCTAAATAGATTTAATATTCCTTCCTTAAACTGATTATTTGCAGATTGGTGAATTTTCCTTAGTTCACTGCAATTATTAACTTCGT                                       ]


>consensus_8720#0 TCGGCACGAGGGCCTTCTACCACTGGTGTCCCGGAACGGCATATTGTTCAGAAACATGTC AGGTTTGAACACTGGACAGCTCAACATAATCGCGATTGCCGTCGTCGAACAGAGTCACAG CAGCAACAGCAAATGCGTAGCTAGCATAGTATAGACCAAGCGTATATATATATATGCTCT TCAACTCAGTTTCATTCCCTCCAACCCCGTTTCTAGTCGTTCTTAACTAACTTCTAAGAA TTAAGTTTTTTAAAGTTTGGCAGCCGTATTAGTGATGGAAGAATCAATTTTACCCTATTA TTATTATTCGCGTCAGAGTCTCTTGGACTGTTGAGCGCCGCTCAATCACCGTTTTTTGCT TCATAATATGTTTGATAGCGTATAGTCTTTCTTTATCTCACGATGGCATTGTGATAATAA CGCGTTCTTAGAATTTTATCGTTATTGTAAGTAGAACTAGTGATACTGAAACTAGTAATC ATGAGCTTTCTCACAACTATTCTTTCTTGACAGACCTAGGACTGCGCTAAACCCAGGAGC CAATAAATTTATTTCATTCATGATACTTCTAAATAGATTTAATATTCCTTCCTTAAACTG ATTATTTGCAGATTGGTGAATTTTCCTTAGTTCACTGCAATTATTAACTTCGTTTATGAC ATTAGTGCTGTGAAGCGCACNATACATCATAC



consensusID : consensus_8720#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 670
fasta sequence
                              [TCCTTCTGGCTGGTCTAGTGGGACAAAAATATTGTCTACATTTAATGATCAGTCATCTTCAGCGCCTCAACTTACTCACCCAACTGGAGCAAATGTCTCCACAGGTCCAACTCCTCCTTCGAACTCTTCAGCATCTTCTTCATGTTACTCTTCGGTGTCACCAGCTGCTCTTTCGTCCACGTCTGGTTTAGGTTCTAGTTTAAGTGATCCAAAATCAGTAGACGCATCACCTGGTGAAGTAGCGACCATGCTAGGGAATGCACCTTTTTCTTGCTCATCAGGCAATGGCGGTGGACTAGTTGCTCATTTGCAGTCTGATAGCAATATGATAAAAGCTGAGGAACGCATTCATCGGATATATGCTGATCGACTTATTGCCTTGACAACTGAAAGAGCCCAAGCTCGGGAGGAAGTTCATCGACGCGACATTTTAATCTCTGAACTTCGTCGTGCACATGAAGCTGAGATAAAACGAGTTAAACAACGAACATGGTGTCAAGTGTGCTTAAATGAGGCCTTCTACCACTGTTGTCCCGGAACGGCATATTGTTCAGAAACATGTCAGTTTGAACACTGGACAGCTCAACATAATCGCGATTGCCGTCGTCGAACAGAGTCACAGCAGCAACAGCAAATTCGTAGCTAGCATAGTATAGACCAAGCGTATATA]

[-] EMBL CD165863             [TCCTTCTGGCTGGTCTAGTGGGACAAAAATATTGTCTACATTTAATGATCAGTCATCTTCAGCGCCTCAACTTACTCACCCAACTGGAGCAAATGTCTCCACAGGTCCAACTCCTCCTTCGAACTCTTCAGCATCTTCTTCATGTTACTCTTCGGTGTCACCAGCTGCTCTTTCGTCCACGTCTGGTTTAGGTTCTAGTTTAAGTGATCCAAAATCAGTAGACGCATCACCTGGTGAAGTAGCGACCATGCTAGGGAATGCACCTTTTTCTTGCTCAT                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CD071632             [                                                                                                                                                                                                  CTAGTTTAAGTGATCCAAAATCAGTAGACGCATCACCTGGTGAAGTAGCGACCATGCTAGGGAATGCATCTTTTTCTTGCTCATCAGGCAATGGCGGTGGACTAGTTGCTCATTTGCAGTCTGATAGCAATATGATAAAAGCTGAGGAACGCATTCATCGGATATATGCTGATCGACTTATTGCCTTGACAACTGAAAGAGCCCAAGCTCGGGAGGAAGTTCATCGACGCGACATTTTAATCTCTGAACTTCGTCGTGCACATGAAGCTGAGATAAAACGAGTTAAACAACGAACATGGTGTCAAGTGTGCTTAAATGAGGCCTTCTA                                                                                                                                                    ]
[+] EMBL CD166149             [                                                                                                                                                                                                                                                                                                              CTCATTTGCAGTCTGATAGCAATATGATAAAAGCTGAGGAACGCATTCATCGGATATATGCTGATCGACTTATTGCCTTGACAACTGAAAGAGACCAAGCTCGGGAGGAAGTTCATCGACGCGACATTTTAATCTCTGAACTTCGTCGTGCACATGAAGCTGAGATAAAACGAGTTAAACAACGAACATGGTGTCAAGTGTGCTTAAATGAGGCCTTCTACCACTGTTGTCCCGGAACGGCATATTGTTCAGAAACATGTCAGTTTGAACACTGGACAGCTCAACATAATCGCGATTGCCGTCGTCGAACAGAGTCACAGCAGCAACAGCAAATTCGTAGCTAGCATAGTATAGACCAAGCGTATATA]


>consensus_8720#1 TCCTTCTGGCTGGTCTAGTGGGACAAAAATATTGTCTACATTTAATGATCAGTCATCTTC AGCGCCTCAACTTACTCACCCAACTGGAGCAAATGTCTCCACAGGTCCAACTCCTCCTTC GAACTCTTCAGCATCTTCTTCATGTTACTCTTCGGTGTCACCAGCTGCTCTTTCGTCCAC GTCTGGTTTAGGTTCTAGTTTAAGTGATCCAAAATCAGTAGACGCATCACCTGGTGAAGT AGCGACCATGCTAGGGAATGCACCTTTTTCTTGCTCATCAGGCAATGGCGGTGGACTAGT TGCTCATTTGCAGTCTGATAGCAATATGATAAAAGCTGAGGAACGCATTCATCGGATATA TGCTGATCGACTTATTGCCTTGACAACTGAAAGAGCCCAAGCTCGGGAGGAAGTTCATCG ACGCGACATTTTAATCTCTGAACTTCGTCGTGCACATGAAGCTGAGATAAAACGAGTTAA ACAACGAACATGGTGTCAAGTGTGCTTAAATGAGGCCTTCTACCACTGTTGTCCCGGAAC GGCATATTGTTCAGAAACATGTCAGTTTGAACACTGGACAGCTCAACATAATCGCGATTG CCGTCGTCGAACAGAGTCACAGCAGCAACAGCAAATTCGTAGCTAGCATAGTATAGACCA AGCGTATATA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8720#0      TCGGCACGAGGGCCTTCTACCACTGGTGTCCCGGAACGGCA-TATTGTTCAGAAACATGT 59
consensus_8720#1      -----------TCCTTCTG--GCTGGTCTAGTGGGACAAAAATATTGTCT----ACATTT 43
                                  ******    ***** *   ** **   * ******      **** *

consensus_8720#0      CAGGTTTGAACAC--TGGACAGCTCAACATAATCGCGATTGCCGTCGTCGAACAGAGTCA 117
consensus_8720#1      AATGATCAGTCATCTTCAGCGCCTCAACTTACTCAC--CCAACTGGAGCAAATGTCTCCA 101
                       * * *    **   *   *  ****** ** ** *      *     * **      **

consensus_8720#0      CAGCAGCAACAGCAAATGCGTAGCTAGCATAGTATAGACCAAGCGTATATATATATATGC 177
consensus_8720#1      CAGGTCCAACTCCTCCTTCGAACTCTTCAGCATCTTCTTCATGT-TACTCTTCGGTGTCA 160
                      ***   ****  *   * ** *     **   * *    ** *  **    *   * *  

consensus_8720#0      TCTTCAACTCAGTTTCATTCCC-TCCAACCCCGTTTCTAGTCGTTCTTAACTAACTTCTA 236
consensus_8720#1      CCAGCTGCTC--TTTCGTCCACGTCTGGTTTAGGTTCTAGTTTAAGTGATCCAAAATCAG 218
                       *  *  ***  **** * * * **       * *******     * * * **  **  

consensus_8720#0      AGAATTAAGTTTTTTAAAGTTTGGCAGCCGTATTAGTGATGGAAGAATCAATTTTACCCT 296
consensus_8720#1      TAGACGCATCACCTGGTGAAGTAGCGACCATGCTAG----GGAA--------TGCACCTT 266
                         *   *     *       * **  ** *  ***    ****        *  *** *

consensus_8720#0      ATTATTATTATTCGCGTCAGAGTCTCTTGGACTGTTGAGCGCCGCTCAATCACCGTTTTT 356
consensus_8720#1      TTTCTTGCTCATCAGGCAATGGCGG--TGGACTA------GTTGCTCATTTGCAGTCTGA 318
                       ** **  *  **  *  *  *     ******       *  ***** *  * ** *  

consensus_8720#0      T-GCTTCATAATATGTTTGATAGCGTATAGTCTTTCTTTATCTCACGATGGCATTGTGAT 415
consensus_8720#1      TAGCAATATGATAAAAGCTGAGGAACGCATTCATCGGATATATGCTGATCGACTTATTGC 378
                      * **   ** ***         *     * ** *    *** *   *** *  ** *   

consensus_8720#0      AATAACGCGTTCTTAGAATTTTATCGTTATTGTAAGTAGAACTAGTGATACTGAAACTAG 475
consensus_8720#1      CTTGACA-ACTGAAAGAGCCCAAGC----TCGGGAGGAAGTTCATCGACGC-GACATTTT 432
                        * **    *   ***     * *    * *  ** *     *  **  * ** * *  

consensus_8720#0      TAATCATGAGCTTTCTCACAACTATTCTTTCTTGACAGACCTAGGACTGCGCTAAACCCA 535
consensus_8720#1      AATCTCTGAACTTCGTCGTGCACATGAAGCTGAGATAAAACGAGTTAAACAACGAACATG 492
                       *    *** ***  **      **        ** * * * **     *    ***   

consensus_8720#0      GGAGCCAATAAATTTATTTCA---TTCATGATACTTCTAAATAGATTTAATATTCCTTCC 592
consensus_8720#1      GTGTCAAGTGTGCTTAAATGAGGCCTTCTACCACTGTTGTCCCGGAACGGCATATTGTTC 552
                      *   * * *    ***  * *    *  *   ***  *     *       **    * *

consensus_8720#0      TTAAACTGATTA-TTTGCAGATTGGTGAATTTTCCTTAGTTC--ACTGCAATTATTAACT 649
consensus_8720#1      AGAAACATGTCAGTTTGAACACTGGACAGCTCAACATAATCGCGATTGCCGTCGTCGAAC 612
                        ****   * * **** * * ***  *  *   * ** *    * ***  *  *  *  

consensus_8720#0      TCGTTTATGACATTAGTG------CTGTGA--AGCGCACNATACATCATAC------- 692
consensus_8720#1      AGAGTCACAGCAGCAACAGCAAATTCGTAGCTAGCATAGTATAGACCAAGCGTATATA 670
                          * *   **  *           **    ***  *  *** * **  *       




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)