These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8720#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 692 fasta sequence [TCGGCACGAGGGCCTTCTACCACTGGTGTCCCGGAACGGCATATTGTTCAGAAACATGTCAGGTTTGAACACTGGACAGCTCAACATAATCGCGATTGCCGTCGTCGAACAGAGTCACAGCAGCAACAGCAAATGCGTAGCTAGCATAGTATAGACCAAGCGTATATATATATATGCTCTTCAACTCAGTTTCATTCCCTCC-AACCCCGTTTCTAGTCGTTCTTAACTAACTTCTAAGAATTAAGTTTTTTAAAGTTTGGCAGCCGTATTAGTGATGGAAGAATCAATTTTACCCTATTATTATTATTCGCGTCAGAGTCTCTTGGACTGTTGAGCGCCGCTCAATCACCGTTTTTTGCTTCATAATATGTTTGATAGCGTATAGTCTTTCTTTATCTCACGATGGCATTGTGATAATAACGCGTTCTTAGAATTTTATCGTTATTGTAAGTAGAACTAGTGATACTGAAACTAGTAATCATGAGCTTTCTCACAACTATTCTTTCTTGACAGACCTAGGACTGCGCTAAACCCAGGAGCCAATAAATTTATTTCATTCATGATACTTCTAAATAGATTTAATATTCCTTCCTTAAACTGATTATTTGCAGATTGGTGAATTTTCCTTAGTTCACTGCAATTATTAACTTCGTTTATGACATTAGTGCTGTGAAGCGCACNATACATCATAC] [+] EMBL CD079975 [TCGGCACGAGGGCCTTCTACCACTGGTGTCCCGGAACGGCATATTGTTCAGAAACATGTCAGGTTTGAACACTGGACAGCTCAACATAATCGCGATTGCCGTCGTCGAACAGAGTCACAGCAGCAACAGCAAATGCGTAGCTAGCATAGTATAGACCAAGCGTATATATATATATGCTCTTCAACTCAGTTTCATTCCCTCC AACCCCGTTTCTAGTCGTTCTTAACTAACTTCTAAGAATTAAGTTTTTTAAAGTTTGGCAGCCGTATTAGTGATGGAAGAATCAATTTTACCCTATTATTATTATTCGCGTCAGAGTCTCTTGGACTGTTGAGCGCCGCTCAATCACCGTTTTTTGCTTCATAATATGTTTGATAGCGTATAGTCTTTCTTTATCTCACGATGGCATTGTGATAATAACGCGTTCTTAGAATTTTATCGTTATTGTAAGTAGAACTAGTGATACTGAAACTAGTAATCATGAGCTTTCTCACAACTATTCTTTCTTGACAGACCTAGGACTGCGCTAAACCCAGGAGCCAATAAATTTATTTCATTCATGATACTTCTAAATAGATTTAATATTCCTTCCTTAAACTGATTATTTGCAGATTGGTGAATTTTCCTTAGTTCACTGCAATTATTAACTTCGTTTATGACATTAGTGCTGTGAAGCGCACNATACATCATAC] [+] EMBL CD129529 [ TCA GTTTGAACACTGGACAGCTCAACATAATCGCGATTGCCGTCGTCGAACAGAGTCACAGCAGCAACAGCAAATTCGTAGCTAGCATAGTATAGACCAAGCGTATATATATATATGCTCTTCAACTCAGTTTCATTCCCTCC AACCCCGTTTCTAGTCGTTCTTAACTAACTTCTAAGAATTAAGTTTTTTAAAGTTTGGCAGCCGTATTAGTGATGGAAGAATCAATTTTACCCTATTATTATTATTCGCGTCAGAGTCTCTTGGACTGTTGAGCGCCGCTCAATCACCGTTTTTTGCTTCATAATATGTTTGATAGCGTATAGTCTTTCTTTATCTCACGATGGCATTGTGATAATAACGCGTTCTTAGAATTTTATCGTTATTGTAAGTAGAACTAGTGATACTGAAACTAGTAATCATGAGCTTTCTCACAACTATTCTTTCTTGACAGACCTAGGACTGCGCTAAACCCAGGAGCCAATAAATTTATTTCATTCATGATACTTCTAAATAGATTTAATATTCCTTCCTTAAACTGATTATTTGCAGATTGGTGAATTTTCCTTAGTTCACTGCAATTATTAACTTCGTTTATGACATTAGTGCTGTGA ] [-] EMBL CD188830 [ TCATTCCCTCCAAACCCCGTTTCTAGTCGTTCTTAACTAACTTCTAAGAATTAAGTTTTTTAAAGTTTGGCAGCCGTATTAGTGATGGAAGAATCAATTTTACCCTATTATTATTATTCGCGTCAGAGTCTCTTGGACTGTTGAGCGCCGCTCAATCACCGTTTTTTGCTTCATAATATGTTTGATAGCGTATAGTCTTTCTTTATCTCACGATGGCATTGTGATAATAACGCGTTCTTAGAATTTTATCGTTATTGTAAGTAGAACTAGTGATACTGAAACTAGTAATCATGAGCTTTCTCACAACTATTCTTTCTTGACAGACCTAGGACT ] [-] EMBL CD090637 [ TTTTTCTCNCGATGGCATTGTGATAATAACGCGTTCTTAGAATTTTATCGTTATTGTAAGTAGAAATAGTGATACTGAAACTAGTAATCATGAGCTTTCTCNCNNCTATTCTTTCTTGACAGGCCTAGGNCTGCGCTAAACCCAGGAGCCAATAAATTTATTTCATTCATGATACTTCTAAATAGATTTAATATTCCTTCCTTAAACTGATTATTTGCAGATTGGTGAATTTTCCTTAGTTCACTGCAATTATTAACTTCGT ] consensusID : consensus_8720#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 670 fasta sequence [TCCTTCTGGCTGGTCTAGTGGGACAAAAATATTGTCTACATTTAATGATCAGTCATCTTCAGCGCCTCAACTTACTCACCCAACTGGAGCAAATGTCTCCACAGGTCCAACTCCTCCTTCGAACTCTTCAGCATCTTCTTCATGTTACTCTTCGGTGTCACCAGCTGCTCTTTCGTCCACGTCTGGTTTAGGTTCTAGTTTAAGTGATCCAAAATCAGTAGACGCATCACCTGGTGAAGTAGCGACCATGCTAGGGAATGCACCTTTTTCTTGCTCATCAGGCAATGGCGGTGGACTAGTTGCTCATTTGCAGTCTGATAGCAATATGATAAAAGCTGAGGAACGCATTCATCGGATATATGCTGATCGACTTATTGCCTTGACAACTGAAAGAGCCCAAGCTCGGGAGGAAGTTCATCGACGCGACATTTTAATCTCTGAACTTCGTCGTGCACATGAAGCTGAGATAAAACGAGTTAAACAACGAACATGGTGTCAAGTGTGCTTAAATGAGGCCTTCTACCACTGTTGTCCCGGAACGGCATATTGTTCAGAAACATGTCAGTTTGAACACTGGACAGCTCAACATAATCGCGATTGCCGTCGTCGAACAGAGTCACAGCAGCAACAGCAAATTCGTAGCTAGCATAGTATAGACCAAGCGTATATA] [-] EMBL CD165863 [TCCTTCTGGCTGGTCTAGTGGGACAAAAATATTGTCTACATTTAATGATCAGTCATCTTCAGCGCCTCAACTTACTCACCCAACTGGAGCAAATGTCTCCACAGGTCCAACTCCTCCTTCGAACTCTTCAGCATCTTCTTCATGTTACTCTTCGGTGTCACCAGCTGCTCTTTCGTCCACGTCTGGTTTAGGTTCTAGTTTAAGTGATCCAAAATCAGTAGACGCATCACCTGGTGAAGTAGCGACCATGCTAGGGAATGCACCTTTTTCTTGCTCAT ] [+] EMBL CD071632 [ CTAGTTTAAGTGATCCAAAATCAGTAGACGCATCACCTGGTGAAGTAGCGACCATGCTAGGGAATGCATCTTTTTCTTGCTCATCAGGCAATGGCGGTGGACTAGTTGCTCATTTGCAGTCTGATAGCAATATGATAAAAGCTGAGGAACGCATTCATCGGATATATGCTGATCGACTTATTGCCTTGACAACTGAAAGAGCCCAAGCTCGGGAGGAAGTTCATCGACGCGACATTTTAATCTCTGAACTTCGTCGTGCACATGAAGCTGAGATAAAACGAGTTAAACAACGAACATGGTGTCAAGTGTGCTTAAATGAGGCCTTCTA ] [+] EMBL CD166149 [ CTCATTTGCAGTCTGATAGCAATATGATAAAAGCTGAGGAACGCATTCATCGGATATATGCTGATCGACTTATTGCCTTGACAACTGAAAGAGACCAAGCTCGGGAGGAAGTTCATCGACGCGACATTTTAATCTCTGAACTTCGTCGTGCACATGAAGCTGAGATAAAACGAGTTAAACAACGAACATGGTGTCAAGTGTGCTTAAATGAGGCCTTCTACCACTGTTGTCCCGGAACGGCATATTGTTCAGAAACATGTCAGTTTGAACACTGGACAGCTCAACATAATCGCGATTGCCGTCGTCGAACAGAGTCACAGCAGCAACAGCAAATTCGTAGCTAGCATAGTATAGACCAAGCGTATATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8720#0 TCGGCACGAGGGCCTTCTACCACTGGTGTCCCGGAACGGCA-TATTGTTCAGAAACATGT 59 consensus_8720#1 -----------TCCTTCTG--GCTGGTCTAGTGGGACAAAAATATTGTCT----ACATTT 43 ****** ***** * ** ** * ****** **** * consensus_8720#0 CAGGTTTGAACAC--TGGACAGCTCAACATAATCGCGATTGCCGTCGTCGAACAGAGTCA 117 consensus_8720#1 AATGATCAGTCATCTTCAGCGCCTCAACTTACTCAC--CCAACTGGAGCAAATGTCTCCA 101 * * * ** * * ****** ** ** * * * ** ** consensus_8720#0 CAGCAGCAACAGCAAATGCGTAGCTAGCATAGTATAGACCAAGCGTATATATATATATGC 177 consensus_8720#1 CAGGTCCAACTCCTCCTTCGAACTCTTCAGCATCTTCTTCATGT-TACTCTTCGGTGTCA 160 *** **** * * ** * ** * * ** * ** * * * consensus_8720#0 TCTTCAACTCAGTTTCATTCCC-TCCAACCCCGTTTCTAGTCGTTCTTAACTAACTTCTA 236 consensus_8720#1 CCAGCTGCTC--TTTCGTCCACGTCTGGTTTAGGTTCTAGTTTAAGTGATCCAAAATCAG 218 * * *** **** * * * ** * ******* * * * ** ** consensus_8720#0 AGAATTAAGTTTTTTAAAGTTTGGCAGCCGTATTAGTGATGGAAGAATCAATTTTACCCT 296 consensus_8720#1 TAGACGCATCACCTGGTGAAGTAGCGACCATGCTAG----GGAA--------TGCACCTT 266 * * * * ** ** * *** **** * *** * consensus_8720#0 ATTATTATTATTCGCGTCAGAGTCTCTTGGACTGTTGAGCGCCGCTCAATCACCGTTTTT 356 consensus_8720#1 TTTCTTGCTCATCAGGCAATGGCGG--TGGACTA------GTTGCTCATTTGCAGTCTGA 318 ** ** * ** * * * ****** * ***** * * ** * consensus_8720#0 T-GCTTCATAATATGTTTGATAGCGTATAGTCTTTCTTTATCTCACGATGGCATTGTGAT 415 consensus_8720#1 TAGCAATATGATAAAAGCTGAGGAACGCATTCATCGGATATATGCTGATCGACTTATTGC 378 * ** ** *** * * ** * *** * *** * ** * consensus_8720#0 AATAACGCGTTCTTAGAATTTTATCGTTATTGTAAGTAGAACTAGTGATACTGAAACTAG 475 consensus_8720#1 CTTGACA-ACTGAAAGAGCCCAAGC----TCGGGAGGAAGTTCATCGACGC-GACATTTT 432 * ** * *** * * * * ** * * ** * ** * * consensus_8720#0 TAATCATGAGCTTTCTCACAACTATTCTTTCTTGACAGACCTAGGACTGCGCTAAACCCA 535 consensus_8720#1 AATCTCTGAACTTCGTCGTGCACATGAAGCTGAGATAAAACGAGTTAAACAACGAACATG 492 * *** *** ** ** ** * * * ** * *** consensus_8720#0 GGAGCCAATAAATTTATTTCA---TTCATGATACTTCTAAATAGATTTAATATTCCTTCC 592 consensus_8720#1 GTGTCAAGTGTGCTTAAATGAGGCCTTCTACCACTGTTGTCCCGGAACGGCATATTGTTC 552 * * * * *** * * * * *** * * ** * * consensus_8720#0 TTAAACTGATTA-TTTGCAGATTGGTGAATTTTCCTTAGTTC--ACTGCAATTATTAACT 649 consensus_8720#1 AGAAACATGTCAGTTTGAACACTGGACAGCTCAACATAATCGCGATTGCCGTCGTCGAAC 612 **** * * **** * * *** * * * ** * * *** * * * consensus_8720#0 TCGTTTATGACATTAGTG------CTGTGA--AGCGCACNATACATCATAC------- 692 consensus_8720#1 AGAGTCACAGCAGCAACAGCAAATTCGTAGCTAGCATAGTATAGACCAAGCGTATATA 670 * * ** * ** *** * *** * ** * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||