These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8724#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1165 fasta sequence [CCTCGAGGCCAANATTTCGGCACGAGGTGAACCTGAACTGAAGTATGATGAAAGTTCAATTAATTCCGATTCTAATTTATCTTTATCTTCACAACTTGGAGATGATCCCGTAATTGTCAGTCTTTCTAAATGCAAACCAAGCGTCAACGATTCAGAAAAAGATTTAAAATTAAATGAGCTTAATAACAATGCTAATCCAAATGATGAAATAAGTACCAACTTATATCTTGATCCCGAATGGTTATCTATTCTGAGGTCAACAAATCATTTAATGTCTACTAGCAAAGTTCCCTGTATTCTTCCAGAAAAAGAAACAAGCGAACGTTGTGATTTTTCCGCTACCGATGATGAAATTCAGGCTTTGTACGACCCTTTTGGTGGAGATTTTCAAGTTCCTGACAACTTTGAACGTACTGCTGCAATTTACAAACCGAATGAAACTGATCAAATGAATACAAAAACTACGTCCACACCAATTAGTTTGGTTCAACAAGCAAATGCCTTAAATAAAGAACAACAACTTTTTTCCAACCCACAAACAGAACTAATTTGTGCTATGCTTGATTTAATAAATCCTAATGCACTTTTTCTGGGCAAGCAATCATACAGTTTGCTAGAATTATCAGCACAGTTACAATCTANAAAGGATGAAGAGGAGGATGACGATGAGGTTGAGGGAAATCCAGAAGAAAATATTTGTGAAGACGATGTGAAAAATGATGAAAACCAACTTGATGTCAATGAATATCCATTAGATGTAAACACTAGCTGGATCGCTTCAGACTCATTCGTCAAAGAGAGTTTTACAGAGTATGATCCGATGAATAGCAGTTNTGTATCANATACTAATCAATCTAGTCATAATCCAATTAAAAATACCCAATCTTTATGATAGTGGNTGTAAGTCANAACCCTGAAGAATTGGTATTAGATGATATTGAAAGATATGATGATGAAATTCCCATGAGTTCACTATGTAATGTCCTCACATGACGCTGTTATCTCAGTCACAATTAATAATCGAGCAGGTCATTCTCACTTTGCCTGATCTATATTATCACTAACATATTATTTATTTTACAGGTGTTTTTACTTTCTGAAGATCTTTTGAGATCACTGNATGCTATTTAAGTACATTGTACTAGCTATACATACGGCTGTGACG] [+] EMBL CD081474 [CCTCGAGGCCAANATTTCGGCACGAGGTGAACCTGAACTGAAGTATGATGAAAGTTCAATTAATTCCGATTCTAATTTATCTTTATCTTCACAACTTGGAGATGATCCCGTAATTGTCAGTCTTTCTAAATGCAAACCAAGCGTCAACGATTCAGAAAAAGATTTAAAATTAAATGAGCTTAATAACAATGCTAATCCAAATGATGAAATAAGTACCAACTTATATCTTGATCCCGAATGGTTATCTATTCTGAGGTCAACAAATCATTTAATGTCTACTAGCAAAGTTCCCTGTATTCTTCCAGAAAAAGAAACAAGCGAACGTTGTGATTTTTCCGCTACCGATGATGAAATTCAGGCTTTGTACGACCCTTTTGGTGGAGATTTTCAAGTTCCTGACAACTTTGAACGTACTGCTGCAATTTACAAACCGAATGAAACTGATCAAATGAATACAAAAACTACGTCCACACCAATTAGTTTGGTTCAACAAGCAAATGCCTTAAATAAAGAACAACAACTTTTTTCCAACCCACAAACAGAACTAATTTGTGCTATGCTTGATTTAATAAATCCTAATGCACTTTTTCTGGGCAAGCAATCATACAGTTTGCTAGAATTATCAGCACAGTTACAATCTANAAAGGATGAAGAGGAGGATGACGATGAGGTT ] [+] EMBL CD081831 [ CGAATGGTTATCTATTCTGAGGTCAACAAATCATTTAATGTCTACTAGCAAAGTTCCCTGTATTCTTCCAGAAAAAGAAACAAGCGAACGTTGTGATTTTTCCGCTACCGATGATGAAATTCAGGCTTTGTACGACCCTTTTGGTGGAGATTTTCAAGTTCCTGACAACTTTGAACGTACTGCTGCAATTTACAAACCGAATGAAACTGATCAAATGAATACAAAAACTACGTCCACACCAATTAGTTTGGTTCAACAAGCAAATGCCTTAAATAAAGAACAACAACTTTTTTCCAACCCACAAACAGAACTAATTTGTGCTATGCTTGATTTAATAAATCCTAATGCACTTTTTCTGGGCAAGCAATCATACAGTTTGCTAGAATTATCAGCACAGTTACAATCTAAAAAGGATGAAGAGGAGGATGACGATGAGGTTGAGGGAAATCCAGAAGAAAATATTTGTGAAGACGATGTGAAAAATGATGAAAACCAACTTGATGTCAATGAATATCCATTAGATGTAAACACTAGCTGGATCGCTTCAGACTCATTCGTCAAAGAGAGTTTTACAGAGTATGATCCGATGAATAGCAGTTNTGTATCANATACTAATCAATCTAGTCATAATCCAATTAAAAATACCCAATCTTTATGATAGTGGNTGTAAGTCANAACCCTGAAGAATTGGTATTAGATGATATTGAAAGATATGATGATGAAATTCCCATGAGTTCACTATGTAATGTCCTCACATGACGCTGTTATCTCAGTCACAATTAATAATCGAGCAGGTCATTCTCACTTTGCCTGATCTATATTATCACTAACATATTATTTATTTTACAGGTGTTTTTACTTTCTGAAGATCTTTTGAGATCACTGNATGCTATTTAAGTACATTGTACTAGCTATACATACGGCTGTGACG] [-] EMBL CD159927 [ TATCTATTCTGAGGTCAACAAATCATTTAATGTCTACTAGCAAAGTTCCCTGTATTCTTCCAGAAAAAGAAACAAGCGAACGTTGTGATTTTTCCGCTACCGATGATGAAATTCAGGCTTTGTACGACCCTTTTGGTGGAGATTTTCAAGTTCCTGACAACTTTGAACGTACTGCTGCAATTTACAAACCGAATGAAACTGATCAAATGAATACAAAAACTACGTCCACACCAATTAGTTTGGTTCAACAAGCAAATGCCTTAAATAAAGAACAACAACTTTTTTCCAACCCACAAACAGAACTAATTTGTGCTATGCTTGATTTGATAAATCCTAATGCACTTTTTCTGGGCAAGCAATCATACAGTTTGCTAGAATTATCAGCAC ] consensusID : consensus_8724#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 834 fasta sequence [GAGCCATATTCGGCACGAGCGTCCACACCAATTAGTTTGGTTCAACAAGCAAATGCCTTAAATAAAGAACAACAACTTTTTTCCAACCCACAAACAGAACTAATTTGTGCTATGCTTGATTTAATAAATCCTAATGCACTTTTTCTGGGCAAGCAATCATACAGTTTGCTAGAATTATCAGCACAGTTACAATCTAAAAAGGATGAAGAGGAGGATGACGATGAGGTTGAGGGAAATCCAGAAGAAAATATTTGTGAAGACGATGTGAAAAATGATGAAAACCAACTTGATGTCAATGAATATCCATTAGATGTAAACACTAGCTGGATCGCTTCAGACTCATTCGTCAAAGAGAGTTTTACAGAGTATGATCCGATGAATAGCAGTTTTGTATCAAATACTAATCAATCTAGTCATAATCCAATTAAAAATACAAATCTTTATGATAGTGTTGTAAGTCAAAACCCTGAAGAATTGGTATTAGATGATATTGAAGATAATGATGATGAATTTCCCAATGAGTTTCACTCTGTAAATGTCTCTCAACATGACGCTAGTTATTCTCAGTTCACAAATTTAAATAAATCAGAGCAAGTGTACATTCCTCAACTTTTGCCTGATTCCTAATTATTTAATCGACAAAATACATTATTTTATTTTTAAATTATATACAGGGTGTTTTTTTTTAACTTTTTCTGATAAGTAATTTCATATTTTGATGGAGTTCCAACTTGTAAATGTCTTTTAATCTCTAAATGTAACAGTTTTGTATACCTTAAAGCTAAAATCTCAACCATATTCACTGTCTTATGTTGTAACTGGTACAAATATATT] [+] EMBL CD081752 [GAGCCATATTCGGCACGAGCGTCCACACCAATTAGTTTGGTTCAACAAGCAAATGCCTTAAATAAAGAACAACAACTTTTTTCCAACCCACAAACAGAACTAATTTGTGCTATGCTTGATTTAATAAATCCTAATGCACTTTTTCTGGGCAAGCAATCATACAGTTTGCTAGAATTATCAGCACAGTTACAATCTAAAAAGGATGAAGAGGAGGATGACGATGAGGTTGAGGGAAATCCAGAAGAAAATATTTGTGAAGACGATGTGAAAAATGATGAAAACCAACTTGATGTCAATGAATATCCATTAGATGTAAACACTAGCTGGATCGCTTCAGACTCATTCGTCAAAGAGAGTTTTACAGAGTATGATCCGATGAATAGCAGTTTTGTATCAAATACTAATCAATCTAGTCATAATCCAATTAAAAATACAAATCTTTATGATAGTGTTGTAAGTCAAAACCCTGAAGAATTGGTATTAGATGATATTGAAGATAATGATGATGAATTTCCCAATGAGTTTCACTCTGTAAATGTCTCTCAACATGACGCTAGTTATTCTCAGTTCACAAATTTAAATAAATCAGAGCAAGTGTACATTCCTCAACTTTTGCCTGATTCCTAATTATTTAATCGACAAAATACATTATTTTATTTTTAAATTATATACAGGGTGTTTTTTTTTAACTTTTTCTGATAAGTAATTTCATATTTTGATGGAGTTCCAACTTGTAAATGTCTTTTAATCTCTAAATGTAACAGTTTTGTATACCTTANAGCTAAAATCTCAACCATATTCACTGTCTTATGTTGTAACTGGTACAAATATAT ] [-] EMBL CD075486 [ TTTTTCCAACCCACAAACAGAACTAATTTGTGCTATGCTTGATTTAATAAATCCTAATGCACTTTTTCTGGGCAAGCAATCATACAGTTTGCTAGAATTATCAGCACAGTTACAATCTAAAAAGGATGAAGAGGAGGATGACGATGAGGTTGAGGGAAATCCAGAAGAAAATATTTGTGAAGACGATGTGAAAAATGATGAAAACCAACTTGATGTCAATGAATATCCATTAGATGTAAACACTAGCTGGATCGCTTCAGACTCATTCGTCAAAGAGAGTTTTACAGAGTATGATCCGATGAATAGCAGTTTTGTATCAAATACTAATCAATCTAGTCATAATCCAATTAAAAATACAAATCTTTATGATAGTGTTGTAAGTCAAAACCCTGAAGAATTGGTATTAGATGATATTGAAGATAATGATGATGAATTTCCCAATGAGTTTCACTCTGTAAATGTCTCTCAACATGACGCTAGTTATTCTCAGTTCACAAATTTAAATAAATCAGAGCAAGTGTACATTCCTCAACTTTTGCCTGATTCCTAATTATTTAATCGACAAAATACATTATTTTATTTTTAAATTATATACAGGGTGTTTTTTTTTAACTTTTTCTGATAAGTAATTTCATATTTTGATGGAGTTCCAACTTGTAAATGTCTTTTAATCTCTAAATGTAACAGTTATGTATACCTTAAAGCTAAAATCTCAACCATATTCACTGTCTTATGTTGTAGCTGGTACAAATATAa ] [-] EMBL CD075298 [ GAAAAATGATGAAAACCAACTTGATGTCAATGAATATCCATTAGATGTAAACACTAGCTGGATCGCTTCAGACTCATTCGTCAAAGAGAGTTTTACAGAGTATGATCCGATGAATAGCAGTTTTGTATCAAATACTAATCAATCTAGTCATAATCCAATTAAAAATACAAATCTTTATGATAGTGTTGTAAGTCAAAACCCTGAAGAATTGGTATTAGATGATATTGAAGATAATGATGATGAATTTCCCAATGAGTTTCACTATGTAAATGTCTCTCAACATGACGCTAGTTATTCTCAGTTCACAGATTTAAATAAATCAGAGCAAGTGTACATTCCTCAACTTTTGCCTGATTCCTAATTATTTAATCGACATAATACATTATTTTATTTTTAAATTATATACAGGGTGTTTTTTTTTAACTTTTTCTGATAAGTAATTTCATATTTTGATGGAGTTCCAACTTGTAAATGTCTTTTAATCTCTAAATGTAACAGTTTTGTATACCTTAAAGCTAAAATCTCAACCATATTCACTGTCTTATGTTGTAACTGGTACAAATATATT] consensusID : consensus_8724#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 175 fasta sequence [AATATTTTTGTCCCAGTTCCAACATAAAACAGGGAATATGGTTGAAATTTTACCTTTAAGGTATACAAAACTGTTACATTTAAAAATTAAAAAACATTTACAAGTTGGAACTCCATCAAAATATGAAATTCCTTATCAAAAAAAGTTAAAAAAAACCCCCCTGTTTATAATTTAA] [+] EMBL CD075553 [AATATTTTTGTCCCAGTTCCAACATAAAACAGGGAATATGGTTGAAATTTTACCTTTAAGGTATACAAAACTGTTACATTTAAAAATTAAAAAACATTTACAAGTTGGAACTCCATCAAAATATGAAATTCCTTATCAAAAAAAGTTAAAAAAAACCCCCCTGTTTATAATTTAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8724#0 CCTCGAGGCCAANATTTCGGCACGAGGTGAACCTGAACTGAAGTATGATGAAAGTTCAAT 60 consensus_8724#1 ------------------------------------------------------------ consensus_8724#2 ------------------------------------------------------------ consensus_8724#0 TAATTCCGATTCTAATTTATCTTTATCTTCACAACTTGGAGATGATCCCGTAATTGTCAG 120 consensus_8724#1 ------------------------------------------------------------ consensus_8724#2 ------------------------------------------------------------ consensus_8724#0 TCTTTCTAAATGCAAACCAAGCGTCAACGATTCAGAAAAAGATTTAAAATTAAATGAGCT 180 consensus_8724#1 ------------------------------------------------------------ consensus_8724#2 ------------------------------------------------------------ consensus_8724#0 TAATAACAATGCTAATCCAAATGATGAAATAAGTACCAACTTATATCTTGATCCCGAATG 240 consensus_8724#1 ------------------------------------------------------------ consensus_8724#2 ------------------------------------------------------------ consensus_8724#0 GTTATCTATTCTGAGGTCAACAAATCATTTAATGTCTACTAGCAAAGTTCCCTGTATTCT 300 consensus_8724#1 ------------------------------------------------------------ consensus_8724#2 ------------------------------------------------------------ consensus_8724#0 TCCAGAAAAAGAAACAAGCGAACGTTGTGATTTTTCCGCTACCGATGATGAAATTCAGGC 360 consensus_8724#1 ------------------------------------------------------------ consensus_8724#2 ------------------------------------------------------------ consensus_8724#0 TTTGTACGACCCTTTTGGTGGAGATTTTCAAGTTCCTGACAACTTTGAACGTACTGCTGC 420 consensus_8724#1 ------------------------------------------------------------ consensus_8724#2 ------------------------------------------------------------ consensus_8724#0 AATTTACAAACCGAATGAAACTGATCAAATGAATACAAAAACTACGTCCACACCAATTAG 480 consensus_8724#1 -------------------------GAGCCATATTCGGCACGAGCGTCCACACCAATTAG 35 consensus_8724#2 ------------------------------------------------------------ consensus_8724#0 TTTGGTTCAACAAGCAAATGCCTTAAATAAAGAACAACAACTTTTTTCCAACCCACAAAC 540 consensus_8724#1 TTTGGTTCAACAAGCAAATGCCTTAAATAAAGAACAACAACTTTTTTCCAACCCACAAAC 95 consensus_8724#2 -----------------------------------AATATTTTTGTCCCAGTTCCAACAT 25 ** * *** * *** * * * consensus_8724#0 AGAACTAATTTGTGCTATGCTTGATTTAATAAATCCTAATGCACTTTTTCTGGGCAAGCA 600 consensus_8724#1 AGAACTAATTTGTGCTATGCTTGATTTAATAAATCCTAATGCACTTTTTCTGGGCAAGCA 155 consensus_8724#2 AAAACAG----GGAATATGGTTG-------AAATTTTA-------CCTTTAAGGTATACA 67 * *** * **** *** **** ** ** ** * ** consensus_8724#0 ATCATACAGTTTGCTAGAATTATCAGCACAGTTACAATCTANAAAGGATGAAGAGGAGGA 660 consensus_8724#1 ATCATACAGTTTGCTAGAATTATCAGCACAGTTACAATCTAAAAAGGATGAAGAGGAGGA 215 consensus_8724#2 AAACTGTTACATTTAAAAATTAAAAA-ACATTTACAAGTTGGAA---CTCCATCAAAATA 123 * * * * ***** * *** ****** * ** * * * * consensus_8724#0 TGACGATGAGGTTGAGGGAAATCCAGAAGAAAATATTTGTGAAGACGATGTGAAAAATGA 720 consensus_8724#1 TGACGATGAGGTTGAGGGAAATCCAGAAGAAAATATTTGTGAAGACGATGTGAAAAATGA 275 consensus_8724#2 TGAAATTCCTTATCAAAAAAAGTTA-AAAAAAACCCCCCTGTTTATAATTTAA------- 175 *** * * * *** * ** **** ** * ** * * consensus_8724#0 TGAAAACCAACTTGATGTCAATGAATATCCATTAGATGTAAACACTAGCTGGATCGCTTC 780 consensus_8724#1 TGAAAACCAACTTGATGTCAATGAATATCCATTAGATGTAAACACTAGCTGGATCGCTTC 335 consensus_8724#2 ------------------------------------------------------------ consensus_8724#0 AGACTCATTCGTCAAAGAGAGTTTTACAGAGTATGATCCGATGAATAGCAGTTNTGTATC 840 consensus_8724#1 AGACTCATTCGTCAAAGAGAGTTTTACAGAGTATGATCCGATGAATAGCAGTTTTGTATC 395 consensus_8724#2 ------------------------------------------------------------ consensus_8724#0 ANATACTAATCAATCTAGTCATAATCCAATTAAAAATACCCAATCTTTATGATAGTGGNT 900 consensus_8724#1 AAATACTAATCAATCTAGTCATAATCCAATTAAAAATACA-AATCTTTATGATAGTG-TT 453 consensus_8724#2 ------------------------------------------------------------ consensus_8724#0 GTAAGTCANAACCCTGAAGAATTGGTATTAGATGATATTGAAAGATATGATGATGAAATT 960 consensus_8724#1 GTAAGTCAAAACCCTGAAGAATTGGTATTAGATGATATTGAAGATAATGATGATGAATTT 513 consensus_8724#2 ------------------------------------------------------------ consensus_8724#0 CCCA-TGAGTT-CACTATGTAA---TGTCCTCACATGACGCT-GTTAT-CTCAGT-CACA 1012 consensus_8724#1 CCCAATGAGTTTCACTCTGTAAATGTCTCTCAACATGACGCTAGTTATTCTCAGTTCACA 573 consensus_8724#2 ------------------------------------------------------------ consensus_8724#0 ATT---AATAATC--GAGCAGGT---CATTC-TCA--CTTTGCCTGATC------TATAT 1055 consensus_8724#1 AATTTAAATAAATCAGAGCAAGTGTACATTCCTCAACTTTTGCCTGATTCCTAATTATTT 633 consensus_8724#2 ------------------------------------------------------------ consensus_8724#0 TATCACTAACATA--TTATTTATTTTACAGGTGTTTT------TACTTTCTGAAGATCTT 1107 consensus_8724#1 AATCGACAAAATACATTATTTTATTTTTAAATTATATACAGGGTGTTTTTTTTTAACTTT 693 consensus_8724#2 ------------------------------------------------------------ consensus_8724#0 TTGAGATCACTGNATGC-TATTTAAGTACATTGTACTAGCTATACATACGGCTGTGACG- 1165 consensus_8724#1 TTCTGATAAGTAATTTCATATTTTGATGGA--GTTCCAACT-TGTAAATGTCTTTTAATC 750 consensus_8724#2 ------------------------------------------------------------ consensus_8724#0 ------------------------------------------------------------ consensus_8724#1 TCTAAATGTAACAGTTTTGTATACCTTAAAGCTAAAATCTCAACCATATTCACTGTCTTA 810 consensus_8724#2 ------------------------------------------------------------ consensus_8724#0 ------------------------ consensus_8724#1 TGTTGTAACTGGTACAAATATATT 834 consensus_8724#2 ------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||