cluster # 8726

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 8726 cluster # 8726 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8726#0 length = 824 sequences # 6

consensus_8726#1 length = 267 sequences # 1

consensusID : consensus_8726#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 824
fasta sequence

                              [CCAGGCCANAATTTGGCACGAGGATCACTCTGTATGTACTTTTCTTTTCTAACATATGAAAATGAGCCATCATACTTTGATCAATTGTTTTAAACGTGCAATTGAACCAAATTTTTCAAATAGTTTAAAGAAATCATCAACACAATCAAGTATGACAACAGAACAACAAAATCCAATTGAAATTTGTGATGTAATAACTCG-TTCACCTAAAATGATTGATAT-TACATCTAAAATTGTAAATGGAAATAGTCAGAAACAAAATATTATGACAACAATTAGATCAGCTAAAGCACAAGTATTTATATGTATTGATGATTATATTAAACAATTTATTCATAATCAATGTTTGATTATAGATAATAATTCAGATAAGATTATCCATGATAATGATAATAATGAAAGTCATATTGATGATAAT-AATACAAATGAATTATATGAACTATTAACACCAAAAGGTGATGTATTTACAGTGGCACGTTTAGCTGGTATACAAGCTGCTAAACAAGCTTCTAATATTATACCATTATGTCATCAAGTGCCATTATCATATATTTCAGTGGATATTGGTTACAGATTAGGCAAAATTCATATACAATCACAAGTAAAAGCAGTTGGTCAGTCTACAGGTGTAGAAATGGAAGCATTAACAGCTGTTTCTGTTGCTGCACTAACGGTTTACGATATGCTAAAACCGTTACAAAAAGGGCCAATTATTATTGAGAAAATTGAACTATTAGAAAAACTTGGTGGGATCCAAAGGTNCTACTTANNACTNGNTGCATCGAANTAAGAANAGACTTGATATCCAGCTTGCTTAAAATCAT]

[+] EMBL CD080836             [CCAGGCCANAATTTGGCACGAGGATCACTCTGTATGTACTTTTCTTTTCTAACATATGAAAATGAGCCATCATACTTTGATCAATTGTTTTAAACGTGCAATTGAACCAAATTTTTCAAATAGTTTAAAGAAATCATCAACACAATCAAGTATGACAACAGAACAACAAAATCCAATTGAAATTTGTGATGTAATAACTCG TTCACCTAAAATGATTGATAT TACATCTAAAATTGTAAATGGAAATAGTCAGAAACAAAATATTATGACAACAATTAGATCAGCTAAAGCACAAGTATTTATATGTATTGATGATTATATTAAACAATTTATTCATAATCAATGTTTGATTATAGATAATAATTCAGATAAGATTATCCATGATAATGATAATAATGAAAGTCATATTGATGATAAT AATACAAATGAATTATATGAACTATTAACACCAAAAGGTGATGTATTTACAGTGGCACGTTTAGCTGGTATACAAGCTGCTAAACAAGCTTCTAATATTATACCATTATGTCATCAAGTGCCATTATCATATATTTCAGTGGATATTGGTTACAGATTAGGCAAAATTCATATACAATCACAAGTAAAAGCAGTTGGTCAGTCTACAGGTGTAGAAATGGAAGCATTAACAGCTGTTTCTGTTGCTGCACTAACGGTTTACGATATGCTAAAACCGTTACAAAAAGGGCCAATTATTATTGAGAAAATTGAACTATTAGAAAAACTTGGTGGGATCCAAAGGTNCTACTTANNACTNGNTGCATCGAANTAAGAANAGACTTGATATCCAGCTTGCTTAAAATCAT]
[+] EMBL CD198683             [                                              ataccagcTATGAAAATGAGCCATCATACTTTGATCAATTGTTTTAAACGTGCAATTGAACCAAATTTTTCAAATAGTTTAAAGAAATCATCAACACAATCAAGTATGACAACAGAACAACAAAATCCAATTGAAATTTGTGATGTAATAACTCG TTCACCTAAAATGATTGATAT TACATCTAAAATTGTAAATGGAAATAGTCAGAAACAAAATATTATGACAACAATTAGATCAGCTAAAGCACAAGTATTTATATGTATTGATGATTATATTAAACAATTTATTCATAATCAATGTTTGATTATAGATAATAATTCAGATAAGATTATCCATGATAATGATAATAATGANAGTCATATTGATGATAATNAATAC AATGAATTA                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CD070257             [                                                               GAGCCATCATACTTTGATCAATTGTTTTAAACGTGCAATTGAACCAAATTTTTCAAATAGTTTAAAGAAATCATCAACACAATCAAGTATGACAACAGAACAACAAAATCCAATTGAAATTTGTGATGTAATAACTCG TTCACCTAAAATGATTGATAT TACATCTAAAATTGTAAATGGAAATAGTCAGAAACAAAATATTATGACAACAATTAGATCAGCTAAAGCACAAGTATTTATATGTATTGATGATTATATTAAACAATTTATTCATAATCAATGTTTGATTATAGATAATAATTCAGATAAGATTATCCATGATAATGATAATAATNGAAGTCATATTGATGATAAA TATACNAATGAATTATATGAACTATNCACACC AAAGGTGATGTATTTACAGT                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CD070426             [                                                                                                                                                                                                    ACTCGTTTCACCTAAAATGATTGATAT TACATCTAAAATTGTAAATGGANATAGTCAGAAACAAAATATTATGACAACAATTAGATCAGCTAAAGCACAAGTATTTATATGTATTGATGATTATATTAAACAATTTATTCATAATCAATGTTTGATCATAGATAATAATTCAGATAAGATTATCCATGATAATGATAATAATGAAAGTCATATTGATGATAAT AATACAAATGAATTATATGAACTATTAACACCAAAAGGTGATGTATTTACAGTG                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CD070441             [                                                                                                                                                                                                                         TGATATANNCATCTAAATNNGTAAATGGANATAGTCAGAAACAAAATATTATGACAACAATTAGATCAGCTAAAGCACAAGTATTTATATGTATTGATGATTATATTAAACAATTTATTCATAATCAATGTTTGATTATAGATAATAATTCAGATAAGATTATCCATGATAATGATAATAATGAAAGTCATATTGATGATAAT AATACAAATGAATTATATGAACTATTAACACCAAAAGGTGATGTATTTACAGTG                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CD070461             [                                                                                                                                                                                                                         TGATA  TACATCTAAAA TGTAAATGGAAATAGTCAGAAACAAAATATTATGACAACAATTAGATCAGCTAAAGCACAAGTATTTATGTGTATTGATGATTATATTAAACAATTTATTCATAATCAATGTTTGATTATAGATAATAATTCAGATAAGATTATCCATGATAATGATAATAATGAAAGTCATATTGATGATAAT AATACAAATGAATTATATGAACTATTAACACCAAAAGGTGATGTATTTACAGTG                                                                                                                                                                                                                                                                                                                                                                ]




>consensus_8726#0
CCAGGCCANAATTTGGCACGAGGATCACTCTGTATGTACTTTTCTTTTCTAACATATGAA
AATGAGCCATCATACTTTGATCAATTGTTTTAAACGTGCAATTGAACCAAATTTTTCAAA
TAGTTTAAAGAAATCATCAACACAATCAAGTATGACAACAGAACAACAAAATCCAATTGA
AATTTGTGATGTAATAACTCGTTCACCTAAAATGATTGATATTACATCTAAAATTGTAAA
TGGAAATAGTCAGAAACAAAATATTATGACAACAATTAGATCAGCTAAAGCACAAGTATT
TATATGTATTGATGATTATATTAAACAATTTATTCATAATCAATGTTTGATTATAGATAA
TAATTCAGATAAGATTATCCATGATAATGATAATAATGAAAGTCATATTGATGATAATAA
TACAAATGAATTATATGAACTATTAACACCAAAAGGTGATGTATTTACAGTGGCACGTTT
AGCTGGTATACAAGCTGCTAAACAAGCTTCTAATATTATACCATTATGTCATCAAGTGCC
ATTATCATATATTTCAGTGGATATTGGTTACAGATTAGGCAAAATTCATATACAATCACA
AGTAAAAGCAGTTGGTCAGTCTACAGGTGTAGAAATGGAAGCATTAACAGCTGTTTCTGT
TGCTGCACTAACGGTTTACGATATGCTAAAACCGTTACAAAAAGGGCCAATTATTATTGA
GAAAATTGAACTATTAGAAAAACTTGGTGGGATCCAAAGGTNCTACTTANNACTNGNTGC
ATCGAANTAAGAANAGACTTGATATCCAGCTTGCTTAAAATCAT

consensusID : consensus_8726#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 267
fasta sequence

                              [AGTGCCATTATAACATATTTCAGGGGGATATGGGTTACAGATTAGGCAAAAATCATATACAATCACAAGGTAAAAGCAGGTGGTCAGTCTACAGGTGTAGAAATGGAAGCATTAACAGCTGTTTCTGTTGCTGCACTAAGGGTTTACGATATGCTAAAACCGTTACAAAAAGGGCCAATTATTATTGAGAAAATTGAACTATTAGAAAAACTTGGTGGATCCAAAGGTTCCTACTTAAAACTTGGTGCATCGAAAATATAGAGAGAG]

[-] EMBL SMAA69924            [AGTGCCATTATAACATATTTCAGGGGGATATGGGTTACAGATTAGGCAAAAATCATATACAATCACAAGGTAAAAGCAGGTGGTCAGTCTACAGGTGTAGAAATGGAAGCATTAACAGCTGTTTCTGTTGCTGCACTAAGGGTTTACGATATGCTAAAACCGTTACAAAAAGGGCCAATTATTATTGAGAAAATTGAACTATTAGAAAAACTTGGTGGATCCAAAGGTTCCTACTTAAAACTTGGTGCATCGAAAATATAGAGAGAG]




>consensus_8726#1
AGTGCCATTATAACATATTTCAGGGGGATATGGGTTACAGATTAGGCAAAAATCATATAC
AATCACAAGGTAAAAGCAGGTGGTCAGTCTACAGGTGTAGAAATGGAAGCATTAACAGCT
GTTTCTGTTGCTGCACTAAGGGTTTACGATATGCTAAAACCGTTACAAAAAGGGCCAATT
ATTATTGAGAAAATTGAACTATTAGAAAAACTTGGTGGATCCAAAGGTTCCTACTTAAAA
CTTGGTGCATCGAAAATATAGAGAGAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8726#0      CCAGGCCANAATTTGGCACGAGGATCACTCTGTATGTACTTTTCTTTTCTAACATATGAA 60
consensus_8726#1      ------------------------------------------------------------
                                                                                  

consensus_8726#0      AATGAGCCATCATACTTTGATCAATTGTTTTAAACGTGCAATTGAACCAAATTTTTCAAA 120
consensus_8726#1      ------------------------------------------------------------
                                                                                  

consensus_8726#0      TAGTTTAAAGAAATCATCAACACAATCAAGTATGACAACAGAACAACAAAATCCAATTGA 180
consensus_8726#1      ------------------------------------------------------------
                                                                                  

consensus_8726#0      AATTTGTGATGTAATAACTCGTTCACCTAAAATGATTGATATTACATCTAAAATTGTAAA 240
consensus_8726#1      ------------------------------------------------------------
                                                                                  

consensus_8726#0      TGGAAATAGTCAGAAACAAAATATTATGACAACAATTAGATCAGCTAAAGCACAAGTATT 300
consensus_8726#1      ------------------------------------------------------------
                                                                                  

consensus_8726#0      TATATGTATTGATGATTATATTAAACAATTTATTCATAATCAATGTTTGATTATAGATAA 360
consensus_8726#1      ------------------------------------------------------------
                                                                                  

consensus_8726#0      TAATTCAGATAAGATTATCCATGATAATGATAATAATGAAAGTCATATTGATGATAATAA 420
consensus_8726#1      ------------------------------------------------------------
                                                                                  

consensus_8726#0      TACAAATGAATTATATGAACTATTAACACCAAAAGGTGATGTATTTACAGTGGCACGTTT 480
consensus_8726#1      ------------------------------------------------------------
                                                                                  

consensus_8726#0      AGCTGGTATACAAGCTGCTAAACAAGCTTCTAATATTATACCATTATGTCATCAAGTGCC 540
consensus_8726#1      ------------------------------------------------------AGTGCC 6
                                                                            ******

consensus_8726#0      ATTATCATATATTTCAGTGG-ATATTGGTTACAGATTAGGCAAAATTCATATACAATCAC 599
consensus_8726#1      ATTATAACATATTTCAGGGGGATATGGGTTACAGATTAGGCAAAAATCATATACAATCAC 66
                      ***** * ********* ** **** ******************* **************

consensus_8726#0      AAG-TAAAAGCAGTTGGTCAGTCTACAGGTGTAGAAATGGAAGCATTAACAGCTGTTTCT 658
consensus_8726#1      AAGGTAAAAGCAGGTGGTCAGTCTACAGGTGTAGAAATGGAAGCATTAACAGCTGTTTCT 126
                      *** ********* **********************************************

consensus_8726#0      GTTGCTGCACTAACGGTTTACGATATGCTAAAACCGTTACAAAAAGGGCCAATTATTATT 718
consensus_8726#1      GTTGCTGCACTAAGGGTTTACGATATGCTAAAACCGTTACAAAAAGGGCCAATTATTATT 186
                      ************* **********************************************

consensus_8726#0      GAGAAAATTGAACTATTAGAAAAACTTGGTGGGATCCAAAGGTNCTACTTANNACTNGNT 778
consensus_8726#1      GAGAAAATTGAACTATTAGAAAAACTTGGTGGATCCAAAGGTTCCTACTTAAAACTTGGT 246
                      ********************************   * ** * * *******  *** * *

consensus_8726#0      GCATCGAAN-TAAGAANAGACTTGATATCCAGCTTGCTTAAAATCAT 824
consensus_8726#1      GCATCGAAAATATAGAGAGAG-------------------------- 267
                      ********  **   * ***