These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8731#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 940 fasta sequence [AAACGAATTAATCTTGGTCAGTTATGCACTAGTTTGGATAAAAAAGATATTTTGTCTAAACCACTTCCGGATTTATTATTACCATTTCAGCATTTACTTTTAAACTTTCCTCGTGTATTATTTCATCATTGGGTTGTTGCACATGCTGAAGTAACAGTTGATAAATTAACAGCTAATCGATCAAATAAAGTAAATCATGATTATATATGTGAACGAACTGAAATGTTGGCTATTCTCTTGCACAATGCACTTATTTTAATGGTGAAGGACGGTGAACGTTACATCTTACGTAGTTTTAAAGCTGTACGTGAACAAGGCGGTTGCAGCGGTAGTAGCGGAATCTCCAGTACTTCTGCTTCTAACAGTAGTACTGTTGAACGTCCTTCCAGTTTCGGATCACCTGGTACAACTAGTGAAAAAGATCGACCCAACTCAGGCAATATTTCTGGTTATTCTTCTATCTCTTCATGTAGTTCTCTTATTTCTTTGCCTGGTTCAAATACTCAATCACATACAAGCCTTGTTTCGGCAGCAGCTAGTGCTGCAGTCGCCAGTATGACTGATCGTTCGTCGACGTCGTTGGGAAGTTCAAAACTTGTTCCTATATTCCCATTGATAGATGTGTTTACTTCGTGTGGTGAAAAATTTGGTGGTGATCATCTATTAAATGTTGTCTTTATGAAGCAAACAGTTTTGATCCGGTTATTGTTTTCAAAAGAAGATGAAAGGCAAAATTGGTCAGCTTATATTCAAGAAAATAGTGTGACTACACAAAGTATTGATCGACAACGTGTGTTGAAACCAAGTGCTTCTGCCGCTGCCGCCTCTTCATCACCATCGTCATCTACTCAAAATCGGCCGACGATCGGTATAACTTCTGAATCGCTTATTTCTAAAACCTCAGGTAACACACCTACAGCTGATGAAGTGTTCAGTTATT] [+] EMBL CD118786 [AAACGAATTAATCTTGGTCAGTTATGCACTAGTTTGGATAAAAAAGATATTTTGTCTAAACCACTTCCGGATTTATTATTACCATTTCAGCATTTACTTTTAAACTTTCCTCGTGTATTATTTCATCATTGGGTTGTTGCACATGCTGAAGTAACAGTTGATAAATTAACAGCTAATCGATCAAATAAAGTAAATCATGATTATATATGTGAACGAACTGAAATGTTGGCTATTCTCTTGCACAATGCACTTATTTTAATGGTGAAGGACGGTGAACGTTACATCTTACGTAGTTTTAAAGCTGTACGTGAACAAGGCGGTTGCAGCGGTAGTAGCGGAATCTCCAGTACTTCTGCTTCTAACAGTAGTACTGTTGAACGTCCTTCCAGTTTCGGATCACCTGGTACAACTAGTGAAAAAGATCGACCCAACTCAGGCAATATTTCTGGTTATTCTTCTATCTCTTCATGTAGNTCTCTTATTTCTTTGCCTGGTTCANATACTCAATCACATACAAGCCTTGTTTCGGCAGCAGCTAGTGCTGCAGTCGCCAGTATGA ] [+] EMBL CD192574 [ TGCAGCGGTAGTAGCGGAATCTCCAGTACTTCTGCTTCTAACAGTAGTACTGTTGAACGTCTTTCCAGTTTCGGATCACCTGGTACAACTAGTGAAAAAGATCGACCCAACTCAGGCAATATTTCTGGTTATTCTTCTATCTCTTCATGTAGTTCTCTTATTTCTTTGCCTGGTTCAAATACTCAATCACATACAAGCCTTGTTTCGGCAGCAGCTAGTGCTGCAGTCGCCAGTATGACTGATCGTTCGTCGACGTCGTTGGGAAGTTCAAAACTTGTTCCTATATT ] [-] EMBL CD127147 [ TAGTGAAAAAGATCGACCCAACTCAGGCAATATTTCTGGTTATTCTTCTATCTCTTCATGTAGTTCTCTTATTTCTTTGCCTGGTTCAAATACTCAACCACATACAAGCCTTGTTTCGGCAGCAGCTAGTGCTGCAGTCGCCAGTATGACTGATCGTTCGTCGACGTCGTTGGGAAGTTCAAAACTTGTTCCTATATTCCCATTGATAGATGTGTTTACTTCGTGTGGTGAAAAATTTGGTGGTGATCATCTATTAAATGTTGTCTTTATGAAGCAAACAGTTTTGATCCGGTTATTGTTTTCAAAAGAAGATGAAAGGCAAAATTGGTCAGCTTATATTCAAGAAAATAGTGTGACTACACAAAGTATTGATCGACAACGTGTGTTGAAACCAAGTGCTTCTGCCGCTGCCGCCTCTTCATCACCATCGTCATCTACTCAAAATCGGCCGACGATCGGTATAACTTCTGAATCGCTTATTTCTAAAACCTC ] [-] EMBL CD127130 [ TAGTGAAAAAGATCGACCCAACTCAGGCAATATTTCTGGTTATTCTTCTATCTCTTCATGTAGTTCTCTTATTTCTTTGCCTGGTTCAAATACTCAACCACATACAAGCCTTGTTTCGGCAGCAGCTAGTGCTGCAGTCGCCAGTATGACTGATCGTTCGTCGACGTCGTTGGGAAGTTCAAAACTTGTTCCTATATTCCCATTGATAGATGTGTTTACTTCGTGTGGTGAAAAATTTGGTGGTGATCATCTATTAAATGTTGTCTTTATGAAGCAAACAGTTTTGATCCGGTTATTGTTTTCAAAAGAAGATGAAAGGCAAAATTGGTCAGCTTATATTCAAGAAAATAGTGTGACTACACAAAGTATTGATCGACAACGTGTGTTGAAACCAAGTGCTTCTGCCGCTGCCGCCTCTTCATCACCATCGTCATCTACTCAAAATCGGCCGACGATCGGTATAACTTCTGAATCGCTTATTTCTAAAACCTC ] [-] EMBL CD063662 [ CATACAAGCCTTGTTTCGGCAGCAGCTAGTGCTGCAGTCGCCAGTATGACTGATCGTTCGTCGACGTCGTTGGGAAGTTCAAAACTTGTTCCTATATTCCCATTGATAGATGTGTTTACTTCGTGTGGTGAAAAATTTGGTGGTGATCATCTATTAAATATTGTCTTTATGAAGCAAACAGTTTTGATCCGGTTATTGTTTTCAAAAGAAGATGAAAGGCAAAATTGGTCAGCTTATATTCAAGAAAATAGTGTGACTACACAAAGTATTGATCGACAACGTGTGTTGAAACCAAGTGCTTCTGCCGCTGCCGCCTCTTCATCACCATCGTCATCTACTCAAAATCGGCCGACGATCGGTATAACTTCTGAATCGCTTATTTCTAAAACCTCAGGTAACACACCTACAGCTGATGAAGTGTTCA ] [-] EMBL CD169578 [ AGTATGACTGATCGTTCGTCGACGTCGTTGGGAAGTTCAAAACTTGTTCCTATATTCCCATTGATAGATGTGTTTACTTCGTGTGGTGAAAAATTTGGTGGTGATCATCTATTAAATATTGTCTTTATGAAGCAAACAGTTTTGATCCGGTTATTGTTTTCAAAAGAAGATGAAAGGCAAAATTGGTCAGCTTATATTCAAGAAAATAGTGTGACTACACAAAGTATTGATCGACAACGTGTGTTGAAACCAAGTGCTTCTGCCGCTGCCGCCTCTTCATCACCATCGTCATCTACTCAAAATCGGCCGACGATCGGTATAACTTCTGAATCGCTTATTTCTAAAACCTCAGGTAACACACCTACAGCTGATGAAGT TTCAGTTATT] consensusID : consensus_8731#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 245 fasta sequence [GATTTATTATTACCATTTCAGCATTTACTTCTAAACTTTCCTCGAGTATTATTTCATCATTGGGCTGATGCTCATGCTGACGTAGCAGATGATAAATTAACAGCTGATCGATCAGATAATAGGAAACCATGATTATATATGCGAACGAACTGAAATGGTGGCTATTCTCTTGCACAATGCACTTATTTTAATGGTGAAGGACGGAGAACGCTACATTGTACGTAGGTCTAAAGCTGTACGTGAAC] [+] EMBL CD118883 [GATTTATTATTACCATTTCAGCATTTACTTCTAAACTTTCCTCGAGTATTATTTCATCATTGGGCTGATGCTCATGCTGACGTAGCAGATGATAAATTAACAGCTGATCGATCAGATAATAGGAAACCATGATTATATATGCGAACGAACTGAAATGGTGGCTATTCTCTTGCACAATGCACTTATTTTAATGGTGAAGGACGGAGAACGCTACATTGTACGTAGGTCTAAAGCTGTACGTGAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8731#0 AAACGAATTAATCTTGGTCAGTTATGCACTAGTTTGGATAAAAAAGATATTTTGTCTAAA 60 consensus_8731#1 ------------------------------------------------------------ consensus_8731#0 CCACTTCCGGATTTATTATTACCATTTCAGCATTTACTTTTAAACTTTCCTCGTGTATTA 120 consensus_8731#1 ---------GATTTATTATTACCATTTCAGCATTTACTTCTAAACTTTCCTCGAGTATTA 51 ****************************** ************* ****** consensus_8731#0 TTTCATCATTGGGTTGTTGCACATGCTGAAGTAACAGTTGATAAATTAACAGCTAATCGA 180 consensus_8731#1 TTTCATCATTGGGCTGATGCTCATGCTGACGTAGCAGATGATAAATTAACAGCTGATCGA 111 ************* ** *** ******** *** *** **************** ***** consensus_8731#0 TCAAATAA-AGTAAATCATGATTATATATGTGAACGAACTGAAATGTTGGCTATTCTCTT 239 consensus_8731#1 TCAGATAATAGGAAACCATGATTATATATGCGAACGAACTGAAATGGTGGCTATTCTCTT 171 *** **** ** *** ************** *************** ************* consensus_8731#0 GCACAATGCACTTATTTTAATGGTGAAGGACGGTGAACGTTACATCTTACGTAGTTTTAA 299 consensus_8731#1 GCACAATGCACTTATTTTAATGGTGAAGGACGGAGAACGCTACATTGTACGTAGGTCTAA 231 ********************************* ***** ***** ******* * *** consensus_8731#0 AGCTGTACGTGAACAAGGCGGTTGCAGCGGTAGTAGCGGAATCTCCAGTACTTCTGCTTC 359 consensus_8731#1 AGCTGTACGTGAAC---------------------------------------------- 245 ************** consensus_8731#0 TAACAGTAGTACTGTTGAACGTCCTTCCAGTTTCGGATCACCTGGTACAACTAGTGAAAA 419 consensus_8731#1 ------------------------------------------------------------ consensus_8731#0 AGATCGACCCAACTCAGGCAATATTTCTGGTTATTCTTCTATCTCTTCATGTAGTTCTCT 479 consensus_8731#1 ------------------------------------------------------------ consensus_8731#0 TATTTCTTTGCCTGGTTCAAATACTCAATCACATACAAGCCTTGTTTCGGCAGCAGCTAG 539 consensus_8731#1 ------------------------------------------------------------ consensus_8731#0 TGCTGCAGTCGCCAGTATGACTGATCGTTCGTCGACGTCGTTGGGAAGTTCAAAACTTGT 599 consensus_8731#1 ------------------------------------------------------------ consensus_8731#0 TCCTATATTCCCATTGATAGATGTGTTTACTTCGTGTGGTGAAAAATTTGGTGGTGATCA 659 consensus_8731#1 ------------------------------------------------------------ consensus_8731#0 TCTATTAAATGTTGTCTTTATGAAGCAAACAGTTTTGATCCGGTTATTGTTTTCAAAAGA 719 consensus_8731#1 ------------------------------------------------------------ consensus_8731#0 AGATGAAAGGCAAAATTGGTCAGCTTATATTCAAGAAAATAGTGTGACTACACAAAGTAT 779 consensus_8731#1 ------------------------------------------------------------ consensus_8731#0 TGATCGACAACGTGTGTTGAAACCAAGTGCTTCTGCCGCTGCCGCCTCTTCATCACCATC 839 consensus_8731#1 ------------------------------------------------------------ consensus_8731#0 GTCATCTACTCAAAATCGGCCGACGATCGGTATAACTTCTGAATCGCTTATTTCTAAAAC 899 consensus_8731#1 ------------------------------------------------------------ consensus_8731#0 CTCAGGTAACACACCTACAGCTGATGAAGTGTTCAGTTATT 940 consensus_8731#1 ----------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||