These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8737#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 705 fasta sequence [CTCCAGGCCAANAATTCGGCACGAGGAGCACTTCGTTTTCTCGGTTGTGTGGATTTAAACAGTCTGAGTGCCGAAGAACAAAGAGGATGGGCATTTTCTGTTGGTTTGGCAGCTATTCTTAGTGATGGTGTTTACAGCTTTGGCGAACTCCTGACACATGATGTCTTGAAAAGTTTGCAAGGTTCTTCAGAGGCATGGCTTATTGACCTACTGCAAGCTTTCAATAGAGGTGATTTAAATCAGTTAGATAATCTACGCAGCCGTTGGTGTGTTCAAGCTGATCTAGTAGCTGCTGAACCAAAATTAAAGGACAAAGTCACATTATTATGTCTAGTGGAAATGGTGTTTCGCCAACCAACTAATAAACGTACACTGACATTTGTAGAAATTTCATCTACTACGAGAGTTCCAATTGACCAAGTTGAACATTTTTTGATGAAAGCACTTTCCTTAAAATTGATAAAAGGACGTATTGATGAAGTTAATCAGTGTGTTTCTCTTACTTGGTTACAACNCTCGTGTTCTAGACAAAGAACAGATTGGAAGCATGTGTACTCGATTGAAAGAATGGTCTTCTACAGTTGAAAATATGAAAAACCTTNGTCGAAGTGGATACCAAATCTATTNTGACTTG-AAAGTATNNTCGTGTTTATTAATCCGCTNTCTTGTACACCCGTTTGTAATC-ACCAGCACATACTTTT-ATAA] [+] EMBL CD080742 [CTCCAGGCCAANAATTCGGCACGAGGAGCACTTCGTTTTCTCGGTTGTGTGGATTTAAACAGTCTGAGTGCCGAAGAACAAAGAGGATGGGCATTTTCTGTTGGTTTGGCAGCTATTCTTAGTGATGGTGTTTACAGCTTTGGCGAACTCCTGACACATGATGTCTTGAAAAGTTTGCAAGGTTCTTCAGAGGCATGGCTTATTGACCTACTGCAAGCTTTCAATAGAGGTGATTTAAATCAGTTAGATAATCTACGCAGCCGTTGGTGTGTTCAAGCTGATCTAGTAGCTGCTGAACCAAAATTAAAGGACAAAGTCACATTATTATGTCTAGTGGAAATGGTGTTTCGCCAACCAACTAATAAACGTACACTGACATTTGTAGAAATTTCATCTACTACGAGAGTTCCAATTGACCAAGTTGAACATTTTTTGATGAAAGCACTTTCCTTAAAATTGATAAAAGGACGTATTGATGAAGTTAATCAGTGTGTTTCTCTTACTTGGTTACAACNCTCGTGTTCTAGACAAAGAACAGATTGGAAGCATGTGTACTCGATTGAAAGAATGGTCTTCTACAGTTGAAAATATGAAAAACCTTNGTCGAAGTGGATACCAAATCTATTNTGACTTG AAAGTATNNTCGTGTTTATTAATCCGCTNTCTTGTACACCCGTTTGTAATC ACCAGCACATACTTTT ATA ] [-] EMBL CD193982 [ CGTTTTCTCGGTTGTGTGGATTTAAACAGTCTGAGTGCCGAAGAACAAAGAGGATGGGCATTTTCTGTTGGTTTGGCAGCTATTCTTAGTGATGGTGTTTACAGCTTTGGCGAACTCCTGACACATGATGTCTTGAAAATTTTGCAAGGTTCTTCAGAGGCATGGCTTATTGACCTACTGCAAGCTTTCAATAGAGGTGATTTAAATCAGTTAGATAATCTACGC ] [-] EMBL CD074667 [ CACATGATGTCTTGAAAAGTTTGCAAGGTTCTTCAGAGGCATGGCTTATTGACCTACTGCAAGCTTTCAATAGAGGTGATTTAAATCAGTTAGATAATCTACGCAGCCGTTGGTGTGTTCAAGCTGATCTAGTAGCTGCTGAACCAAAATTAAAGGACAAAGTCCCATTATTATGTCTAGTGGAAATGGTGTTTCGCCAACCAACTAATAAACGTACACTGACATTTGTAGAAATTTCATTTACTACGAGAGTTCCAATTGACCAAGTTGAACATTTTTTGATGAAAGCACTTTCCTTAAAATTGATAAAAGGACGTATTGATGAAGTTAATCAGTGTGTTTCTCTTACTTGGTTACAAC CTCGTGTTTTAGACAAAGAACAGATTGGAAGCATGTGTACTCGATTGAAAGAATGGTTTTTTACAGTTGAAAATATGAAAAACCTT GTCGAAGTGGATACAAAATTTATTTTGACTTGAAAAGTAT TTCGTGTTTATTAATCCGCTTTCTTGTACACCCGTTTGTAATCAACCAGCACATACTTTTAATAA] consensusID : consensus_8737#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 559 fasta sequence [CGTTATGAGTTTTCTGGCAAATCCATGGATGCGAAAATACTACTTAACACAACTATTGGAATGATTTACTTGACAGCACTTAGCGATTTACCGAGTGCTCGTCAAATAATTGAGAATACACAAACTCAGTTAAATGAAATCGAAGGTGTTACTACAGTACACTCAAGGTTTTATCAACTTAGTTCAAGATATTATCAAATTACTGGACAACATGCTGAATTTTATCAAGAAGCACTTCGTTTTCTCGGTTGTGTGGATTTAAACAGTCTGAGTGCCGAAGAACAAAGAGGATGGGCATTTTCTGTTGGTTTGGCAGCTATTCTTAGTGATGGTGTTTACAGCTTTGGCGAACTCCTGACACATGATGTCTTGAAAAGTTTGCAAGGTTCTTCAGAGGCATGGCTTATTGACCTACTGCAAGCTTTCAATAGAGGTGATTTAAATCAGTTAGATTATCTACGCAGCCCTTGGTGTGTTCAAGCTGATCTAGTAGCTGCTGAACCAAAATTAAAGGACAAAGTCACATTATTATGTCTAGTGGAAATGGTGTTTCGCCAAC] [+] EMBL CD083317 [CGTTATGAGTTTTCTGGCAAATCCATGGATGCGAAAATACTACTTAACACAACTATTGGAATGATTTACTTGACAGCACTTAGCGATTTACCGAGTGCTCGTCAAATAATTGAGAATACACAAACTCAGTTAAATGAAATCGAAGGTGTTACTACAGTACACTCAAGGTTTTATCAACTTAGTTCAAGATATTATCAAATTACTGGACAACATGCTGAATTTTATCAAGAAGCACTTCGTTTTCTCGGTTGTGTGGATTTAAACAGTCTGAGTGCCGAAGAACAAAGAGGATGGGCATTTTCTGTTGGTTTGGCAGCTATTCTTAGTGATGGTGTTTACAGCTTTGGCGAACTCCTGACACATGATGTCTTGAAAAGTTTGCAAGGTTCTTCAGAGGCATGGCTTATTGACCTACTGCAAGCTTTCAATAGAGGTGATTTAAATCAGTTAGATTATCTACGCAGCCCTTGGTGTGTTCAAG ] [-] EMBL CD115813 [ TTTACTTGACAGCACTTAGCGATTTACCGAGTGCTCGTCAAATAATTGAGAATACACAAACTCAGTTAAATGAAATCGCAGGTGTTACTACAGTACACTCAAGGTTTTTTCAACTTAGTTCAAGATATTATCAAATTACTGGACAACATGCTGAATTTTATCAAGAAGCACTTCGTTTTCTCGGTTGTGTGGATTTAAACAGTCTGAGTGCCGAAGAACAAAGAGGATGGGCATTTTCTGTTGGTTTGGCAGCTATTCTTAGTGTTGGTGTTTACAGCTTTGGCGAACTCCTGACACATGATGTCTTGAAAAGTTTGCAAGGTTCTTCAGAGGCGTGGCTTATTGACCTACTGCAAGCTTTCAATAGAGGTGATTTAAATCAGTTAGATAATCTACGCAGCCGTTGGTGTGTTCAAGCTGATCTAGTAGCTGCTGAACCAAAATTAAAGGACAAAGTCACATTATTATGTCTAGTGGAAATGGTGTTTCGCCAAC] [+] EMBL CD192725 [ TTTTATCAACTTAGTTCAGGATATTATCAAATTACTGGACAACATGCTGAATTTTATCAAGAAGCACTTCGTTTTCTCGGTTGTGTGGATTTAAACAGTCTGAGTGCCGAAGAACAAAGAGGATGGGCATTTTCTGTTGGTTTGGCAGCTATTCTTAGTGATGGTGTTTACAGCTTTGGCGAACT ] [-] EMBL CD154889 [ CACTTCGTTTTCTCGGTTGTGTGGATTTAAACAGTCTGAGTGCCGAAGAACAAAGAGGATGGGCATTTTCTGTTGGTTTGGCAGCTATTCTTAGTGATGGTGTTTACAGCTTTGGCGAACTCCTGACACATGATGTCTTGAAAAGTTTGCAAGGT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8737#0 ------------------------------------------------------------ consensus_8737#1 CGTTATGAGTTTTCTGGCAAATCCATGGATGCGAAAATACTACTTAACACAACTATTGGA 60 consensus_8737#0 ------------------------------------------------------------ consensus_8737#1 ATGATTTACTTGACAGCACTTAGCGATTTACCGAGTGCTCGTCAAATAATTGAGAATACA 120 consensus_8737#0 ------------------------------------------------------------ consensus_8737#1 CAAACTCAGTTAAATGAAATCGAAGGTGTTACTACAGTACACTCAAGGTTTTATCAACTT 180 consensus_8737#0 -------------------CTCCAGGCCAANAATTCGGCA-----CGAGGAGCACTTCGT 36 consensus_8737#1 AGTTCAAGATATTATCAAATTACTGGACAACATGCTGAATTTTATCAAGAAGCACTTCGT 240 * * ** *** * * * ** ********** consensus_8737#0 TTTCTCGGTTGTGTGGATTTAAACAGTCTGAGTGCCGAAGAACAAAGAGGATGGGCATTT 96 consensus_8737#1 TTTCTCGGTTGTGTGGATTTAAACAGTCTGAGTGCCGAAGAACAAAGAGGATGGGCATTT 300 ************************************************************ consensus_8737#0 TCTGTTGGTTTGGCAGCTATTCTTAGTGATGGTGTTTACAGCTTTGGCGAACTCCTGACA 156 consensus_8737#1 TCTGTTGGTTTGGCAGCTATTCTTAGTGATGGTGTTTACAGCTTTGGCGAACTCCTGACA 360 ************************************************************ consensus_8737#0 CATGATGTCTTGAAAAGTTTGCAAGGTTCTTCAGAGGCATGGCTTATTGACCTACTGCAA 216 consensus_8737#1 CATGATGTCTTGAAAAGTTTGCAAGGTTCTTCAGAGGCATGGCTTATTGACCTACTGCAA 420 ************************************************************ consensus_8737#0 GCTTTCAATAGAGGTGATTTAAATCAGTTAGATAATCTACGCAGCCGTTGGTGTGTTCAA 276 consensus_8737#1 GCTTTCAATAGAGGTGATTTAAATCAGTTAGATTATCTACGCAGCCCTTGGTGTGTTCAA 480 ********************************* ************ ************* consensus_8737#0 GCTGATCTAGTAGCTGCTGAACCAAAATTAAAGGACAAAGTCACATTATTATGTCTAGTG 336 consensus_8737#1 GCTGATCTAGTAGCTGCTGAACCAAAATTAAAGGACAAAGTCACATTATTATGTCTAGTG 540 ************************************************************ consensus_8737#0 GAAATGGTGTTTCGCCAACCAACTAATAAACGTACACTGACATTTGTAGAAATTTCATCT 396 consensus_8737#1 GAAATGGTGTTTCGCCAAC----------------------------------------- 559 ******************* consensus_8737#0 ACTACGAGAGTTCCAATTGACCAAGTTGAACATTTTTTGATGAAAGCACTTTCCTTAAAA 456 consensus_8737#1 ------------------------------------------------------------ consensus_8737#0 TTGATAAAAGGACGTATTGATGAAGTTAATCAGTGTGTTTCTCTTACTTGGTTACAACNC 516 consensus_8737#1 ------------------------------------------------------------ consensus_8737#0 TCGTGTTCTAGACAAAGAACAGATTGGAAGCATGTGTACTCGATTGAAAGAATGGTCTTC 576 consensus_8737#1 ------------------------------------------------------------ consensus_8737#0 TACAGTTGAAAATATGAAAAACCTTNGTCGAAGTGGATACCAAATCTATTNTGACTTGAA 636 consensus_8737#1 ------------------------------------------------------------ consensus_8737#0 AGTATNNTCGTGTTTATTAATCCGCTNTCTTGTACACCCGTTTGTAATCACCAGCACATA 696 consensus_8737#1 ------------------------------------------------------------ consensus_8737#0 CTTTTATAA 705 consensus_8737#1 --------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||