These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8742#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 836 fasta sequence [AGCATTCTGATTGTGCTTTCATGGTGGATAATGAAGCCATTTACGATATATGCAGACGTAATTTGGACATCGAACGACCGACTTATACCAATCTGAACCGTTTAATCGGACAAATCGTCAGTTCAATAACAGCATCACTTCGATTTGATGGTGCACTGAACGTTGATTTGACAGAATTTCAAACTAATCTGGTGCCATATCCTCGTATTCATTTCCCTTTAGCTACTTATGCACCAGTTATTTCCGCCGAGAAAGCATACCATGAACAGTTAAGCGTGGCAGAGATTACTAATGCTTGTTTTGAACCCGCTAATCAAATGGTAAAATGTGATCCACGTCACGGAAAGTATATGGCTTGCTGTATGTTATATCGTGGAGATGTTGTACCTAAAGACGTCAACGCTGCTATAGCTACAATAAAAACCAAGAGAACAATTCAATTTGTAGACTGGTGTCCAACTGGATTCAAAGTTGGTATTAACTACCAACCACCAACTGTTGTACCAGGTGGTGACTTAGCCAAAGTACAACGAGCTGTCTGTATGTTAAGCAACACTACAGCTATTGCTGAAGCTTGGGCACGTCTAGATCACAAATTTGACCTAATGTATGCTAAAAGAGCATTTGTACATTGGTATGTCGGTGAAGGTATGGAAGAAGGTGAATTTTCGGAGGCTCGTGAAGATTTGGCAGCTTTAGAA-AAAGATTATGAAGAAGTTGGTGTGGACAGTGTCGATGCCGAAGGTGAAAATGAAGAAGGTGAAGAATATTAGTTCTTTATTGAAAATGAATTCTCTGAACCCATAAGTTAAAAATATCTAAATAAATAAACAGTA] [+] EMBL CD078252 [AGCATTCTGATTGTGCTTTCATGGTGGATAATGAAGCCATTTACGATATATGCAGACGTAATTTGGACATCGAACGACCGACTTATACCAATCTGAACCGTTTAATCGGACAAATCGTCAGTTCAATAACAGCATCACTTCGATTTGATGGTGCACTGAACGTTGATTTGACAGAATTTCAAACTAATCTGGTGCCATATCCTCGTATTCATTTCCCTTTAGCTACTTATGCACCAGTTATTTCCGCCGAGAAAGCATACCATGAACAGTTAAGCGTGGCAGAGATTACTAATGCTTGTTTTGAACCCGCTAATCAAATGGTAAAATGTGATCCACGTCACGGAAAGTATATGGCTTGCTGTATGTTATATCGTGGAGATGTTGTACCTAAAGACGTCAACGCTGCTATAGCTACAATAAAAACCAAGAGAACAATTCAATTTGTAGACTGGTGTCCAACTGGATTCAAAGTTGGTATTAACTACCAACCACCAACTGTTGTACCAGGTGGTGACTTAGCCAAAGTACAACGAGCTGTCTGTATGTTAAGCAACACTACAGCTATTGCTGAAGCTTGNGCACGTCTAGATCACANATTTGACCTAATGTATGCTANAAGAGCAT ] [+] EMBL CD078333 [AGCATTCTGATTGTGCTTTCATGGTGGATAATGAAGCCATTTACGATATATGCAGACGTAATTTGGACATCGAACGACCGACTTATACCAATCTGAACCGTTTAATCGGACAAATCGTCAGTTCAATAACAGCATCACTTCGATTTGATGGTGCACTGAACGTTGATTTGACAGAATTTCAAACTAATCTGGTGCCATATCCTCGTATTCATTTCCCTTTAGCTACTTATGCACCAGTTATTTCCGCCGAGAAAGCATACCATGAACAGTTAAGCGTGGCAGAGATTACTAATGCTTGTTTTGAACCCGCTAATCAAATGGTAAAATGTGATCCACGTCACGGAAAGTATATGGCTTGCTGTATGTTATATCGTGGAGATGTTGTACCTAAAGACGTCAACGCTGCTATAGCTACAATAAAAACCAAGAGAACAATTCAATTTGTAGACTGGTGTCCAACTGGATTCAAAGTTGGTATTAACTACCAACCACCAAGTGTTGTACCAGGTGGTGACTTAGCCAAAG ] [+] EMBL CD154407 [ GACTTATACCAATCTGAACCGTTTAATCGGACAAATCGTCAGTTCAATAACAGCATCACTTCGATTTGATGGTGCACTGAACGTTGATTTGACAGAATTTCAAACTAATCTGGTGCCATATCCTCGTATTCATTTCCCTTTAGCTACTTATGCACCAGTTATTTCCGCCGAGAAAGCATACCATGAACAGTTAAGCGTGGCAGAGATTACTAATGCTCGTTTTGAACCCGCTAATCAAATGGTAAAATGTGATCCACGTCACGGAAAGTATATGGCTTGCTGTATGTTATATCGTGGAGATGTTGTACCTAAAGACGTCAACGCTGCTATAGCTACAATAAAAACCAAGAGAACAATTCAATTTGTAGACTGGTGTCCAACTGGATTCAAAGTTGGTATTAACTACCAACCACCAACTGTTGTACCAGGTGGTGACTTAGCCAAAGTACAACG ] [+] EMBL CD154665 [ GATTTATACCAATCTGAACCGTTTAATCGGACAAATCGTCAGTTCAATAACAGCATCACTTCGATTTGATGGTGCACTGAACGTTGATTTGACAGAATTTCAAACTAATCTGGTGCCATATCCTCGTATTCATTTCCCTTTAGCTACTTATGCACCAGTTATTTCCGCCGAGAAAGCATACCATGAACAGTTAAGCGTGGCAGAGATTACTAATGCTTGTTTTGAACCCGCTAATCAAATGGTAAAATGTGATCCACGTCACGGAAAGTATATGGCTTGCTGTATGTTATATCGTGGAGATGTTGTACCTAAAGACGTCAACGCTGCTATAGCTACAATAAAAACCAAGAGAACAATTCAATTTGTAGACTGGTGTCCAACTGGATTCAAAGTTGGTATTAACTACCAACCACCAACTGTTGTACCAGGTGGTGACTTAGCCAAAGTACAACG ] [-] EMBL SMAA40574 [ ggggGAACAATTCAATTTGTAGACTGGGGTCCAACTGGATTCAAAGTTGGTATTAATTACCAACCACCAACTGTTTTACCAGGTGGTGACTTAGCCAAAGTACAACGAGCTGTCTGTATGTTAAGCAACACTACAGCTATTGCTGAAGCTTGGGCACGTCTAGATCACAAATTTGACCTAATGTATGCTAAAAGAGCATTTGTACATTGGTATGTCGGTGAAGGTATGGAAGAAGGTGAATTTTCGGAGGCTCGTGAAGATTTGGCAGCTTTAGAA AAAGATTATGAAGAAGTTGGTGTGGACAGTGTCGATGCCGAAGGTGAAAATGAAGAAGGTGAAGAATATTAGTTCTTTATTGAAAATGAATTCTCTGAACCCATAAGTTAAAAATATCTAAATAAATAAACAGTA] [-] EMBL CD072891 [ TTCAAAGTTGGTATTAACTACCAACCCCCAACTGTTGTACCAGGTGGTGGCTTAGCCAAAGTACAACGAGCTGTCTGTATGTTAAGCAACCCTACAGCTATTGCTGAAGCTTGGGCACGTTTAGATCCCAAATTTGGCCTAATGTATGCTAAAAGAGCATTTGTACATTGGTATGTCGGTGAAGGTATGGAAGAAGGTGAATTTTCGGAGGCTCGTGAAGATTTGGCAGCTTTAGAAGAAAGATTATGAAGAAGTTGGTGTGGACAGTGTCGATGCCGAAGGTGAAAATGAAGAAGGTGAAGAATATTAGTTCTTTATTGAAAATGAATTCTCTGAACCCATAAGTTAAAAATATTTAAATAAATAAACAGTA] consensusID : consensus_8742#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 299 fasta sequence [GCACCCCCTTGGGCCGATTGGTGACGGGCCCCCCCCTGAAGCTTGGGCACGCTAGAACACAAATTGACCTAATGTATGCTCAAAGAGCATTGTACATTGGTATGTCGTGAAGTTATGGAAGAAGGTGAATTTCGGAGGCTCGTGAAGATTGGCAGCTTTAGAAAAAGATTATGAAGAAGTTGGTGTTGGACAGTGTCGATGCCGAAGGTGAAAATGAAGAAGGTGAAGAATATTAGTTCTTTATTGAAAATGAATTCTCTGAACCCATAAGTTAAAAATATCTAAATAAATAAACAGTA] [-] EMBL AI882631 [GCACCCCCTTGGGCCGATTGGTGACGGGCCCCCCCCTGAAGCTTGGGCACGCTAGAACACAAATTGACCTAATGTATGCTCAAAGAGCATTGTACATTGGTATGTCGTGAAGTTATGGAAGAAGGTGAATTTCGGAGGCTCGTGAAGATTGGCAGCTTTAGAAAAAGATTATGAAGAAGTTGGTGTTGGACAGTGTCGATGCCGAAGGTGAAAATGAAGAAGGTGAAGAATATTAGTTCTTTATTGAAAATGAATTCTCTGAACCCATAAGTTAAAAATATCTAAATAAATAAACAGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8742#0 AGCATTCTGATTGTGCTTTCATGGTGGATAATGAAGCCATTTACGATATATGCAGACGTA 60 consensus_8742#1 ------------------------------------------------------------ consensus_8742#0 ATTTGGACATCGAACGACCGACTTATACCAATCTGAACCGTTTAATCGGACAAATCGTCA 120 consensus_8742#1 ------------------------------------------------------------ consensus_8742#0 GTTCAATAACAGCATCACTTCGATTTGATGGTGCACTGAACGTTGATTTGACAGAATTTC 180 consensus_8742#1 ------------------------------------------------------------ consensus_8742#0 AAACTAATCTGGTGCCATATCCTCGTATTCATTTCCCTTTAGCTACTTATGCACCAGTTA 240 consensus_8742#1 ------------------------------------------------------------ consensus_8742#0 TTTCCGCCGAGAAAGCATACCATGAACAGTTAAGCGTGGCAGAGATTACTAATGCTTGTT 300 consensus_8742#1 ------------------------------------------------------------ consensus_8742#0 TTGAACCCGCTAATCAAATGGTAAAATGTGATCCACGTCACGGAAAGTATATGGCTTGCT 360 consensus_8742#1 ------------------------------------------------------------ consensus_8742#0 GTATGTTATATCGTGGAGATGTTGTACCTAAAGACGTCAACGCTGCTATAGCTACAATAA 420 consensus_8742#1 ------------------------------------------------------------ consensus_8742#0 AAACCAAGAGAACAATTCAATTTGTAGACTGGTGTCCAACTGGATTCAAAGTTGGTATTA 480 consensus_8742#1 ------------------------------------------------------------ consensus_8742#0 ACTACCAACCACCAACTGTTGTACCAGGTGGTGACTTAGCCAAAGTACAACGAGCTGTCT 540 consensus_8742#1 ---------------------------------------------------GCACCCCCT 9 * * ** consensus_8742#0 GTATGTTAAGCAACACTACAGCTATTGCTGAAGCTTGGGCACGTCTAGATCACAAATTTG 600 consensus_8742#1 -TGGGCCGATTGGTGACGGGCCCCCCCCTGAAGCTTGGGCACG-CTAGAACACAAATT-G 66 * * * * **************** ***** ******** * consensus_8742#0 ACCTAATGTATGCTAAAAGAGCATTTGTACATTGGTATGTCGGTGAAGGTATGGAAGAAG 660 consensus_8742#1 ACCTAATGTATGCTCAAAGAGCATT-GTACATTGGTATGTCG-TGAAGTTATGGAAGAAG 124 ************** ********** **************** ***** *********** consensus_8742#0 GTGAATTTTCGGAGGCTCGTGAAGATTTGGCAGCTTTAGAAAAAGATTATGAAGAAGTTG 720 consensus_8742#1 GTGAATTT-CGGAGGCTCGTGAAGATT-GGCAGCTTTAGAAAAAGATTATGAAGAAGTTG 182 ******** ****************** ******************************** consensus_8742#0 GTGT-GGACAGTGTCGATGCCGAAGGTGAAAATGAAGAAGGTGAAGAATATTAGTTCTTT 779 consensus_8742#1 GTGTTGGACAGTGTCGATGCCGAAGGTGAAAATGAAGAAGGTGAAGAATATTAGTTCTTT 242 **** ******************************************************* consensus_8742#0 ATTGAAAATGAATTCTCTGAACCCATAAGTTAAAAATATCTAAATAAATAAACAGTA 836 consensus_8742#1 ATTGAAAATGAATTCTCTGAACCCATAAGTTAAAAATATCTAAATAAATAAACAGTA 299 ********************************************************* |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||