These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8743#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 850 fasta sequence [GAGCCTTTAATTCGGCACGCAGCTTAATCTCAGTCGGGCTCTTGGTGATCATAGTTATAAGCAAACTCCAAATATTCCATTAACAGATCAAATGATCACACCATCCCCAGATGTTACTGAAATAGATTTAATTCCATCAGCGGATGAATTTTTAGTTATTGCATGTGATGGAGTATGGAATTCAATGACAAGTCAAGAGGTTGTAGAATTTATTCAGGATCGTTTACATCCTCCGACTATAAACAATAACAGTAGTAACAAAAACACTACAAACAATCATTCGAATCCCGCCGCTGATGTCAATGAAAATGATAATGATCGTGGTGAGGTCGATAAATTGGATTCGTCTGATCAATTAAGAAAAATTTGTCATGAAATTTTCGATCATTGTTTGGCGCCGAATACCGACGGTGACGGTACAGGTTGTGATAATATGACCTGTTTTATAGTTCGTTTTGACAATCTTCCTGGTTGGGTTGAATATTACGAAAATAATAATAATAAAGGTAGTGTATTAATTGATTCAACTACCATATCAACGAACAACGCTAAAAACACATCGACGACAACTAAACTATCACCAAGGAAACGACCAATTTCTCATGAACTCTCCGAGGATAATAATCATGTTCATGATGATGAAACACATATTATTGTTATAGATACCAATGGAAACAATTCATCTCCTACCACTGATGATAGTCAGGCGAC-ACAATGAAACGTCCAAAATTGGAATCTCACGAATCGGAGAATTCCACAGAAGCAACAATTACAAATGGGACAGGTAGCAGCGTTTACTAGTAATGTTATGTATTTTATGAAGTGGAAATACAGGAAACAATGGCAGTTG] [+] EMBL CD081739 [GAGCCTTTAATTCGGCACGCAGCTTAATCTCAGTCGGGCTCTTGGTGATCATAGTTATAAGCAAACTCCAAATATTCCATTAACAGATCAAATGATCACACCATCCCCAGATGTTACTGAAATAGATTTAATTCCATCAGCGGATGAATTTTTAGTTATTGCATGTGATGGAGTATGGAATTCAATGACAAGTCAAGAGGTTGTAGAATTTATTCAGGATCGTTTACATCCTCCGACTATAAACAATAACAGTAGTAACAAAAACACTACAAACAATCATTCGAATCCCGCCGCTGATGTCAATGAAAATGATAATGATCGTGGTGAGGTCGATAAATTGGATTCGTCTGATCAATTAAGAAAAATTTGTCATGAAATTTTCGATCATTGTTTGGCGCCGAATACCGACGGTGACGGTACAGGTTGTGATAATATGACCTGTTTTATAGTTCGTTTTGACAATCTTCCTGGTTGGGTTGAATATTACGAAAATAATAATAATAAAGGTAGTGTATTAATTGATTCAACTACCATATCAACGAACAACGCTAAAAACACATCGACGACAACTAAACTATCACCAAGGAAACGACCAATTTCTCATGAACTCTCCGAGGATAATAATCATGTTCATGATGATGAAACACATATTATTGTTATAGATACCAATGGAAACAATTCATCTCCTACCACTGATGATAGTCAGGCGAC ACAATGAAACGTCCAAAATTGGAATCTCACGAATCGGAGAATTCCACAGAAGCAACAATTACAAATGGGACAGGTAGCAGCGTTTACTAGTAATGTTATGTATTTTATGAAGTGGAAATACAGGAAACAATGGCAGTTG] [-] EMBL CD171508 [ CCATCNCCAGATGTTACTGANATAGA TTAATTCCATCAGCGGATGAATTNTTAGTTATTGCATGTGATGGAGTATGGAATTCAATGACAAGTCAGGAGGTTGTAGAATTTATTCAGGATCGTTTACATCCTCCGACTATAAACAATAACAGTAGTAACAAAAACACTACAAACAATCATTCGAATCCCGCCGCTGATGTCAATGAAAATGATAATGATCGTGGTGAGGTCGATAAATTGGATTCGTCTGATCAATTAAGAAAAATTTGTCATGAAATTTTCGATCATTGTTTGGCGCCGAATACCGACGGTGACGGTACAGGTTGTGATAATATGACCTGTATTATAGTT ] [+] EMBL CD190909 [ ATTACGAAAATAATAATAATAAAGGTAGTGTATTAATTGATTCAACTACCATATCAACGAACAACGCTAAAAACACATCGACGACAACTAAACTATCACCAAGGAAACGACCAATTTCTCATGAACTCTCCGAGGATAATAATCATGTTCATGATGATGAAACACATATTATTGTTATAGATACCAATGGAAACAATTCATCTCCTACCACTGATGATAGTCAGGCGACAACAATGAAACGTCCAAAATTGGAATCTCACGAATCGGAG ] consensusID : consensus_8743#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 528 fasta sequence [CAATGAAAATGATAATGATCGTGGTGAGGTCGATAAATTGGATTCGTCTGATCAATTAAGAAAAATTTGTCATGAAGTAAGACTGATAGTTTTTTTCCAGATTTTGTATCTGAGAGAACTGGCAAATAATATCGCTCTTGCTTTGTACAAAAGGAGATGTAGTTTAGTTGATTGTATAAGTTTTTATTACAAGTCTGATGGTGTTGAACACGTTTCTCTTTTTTGTAGTATATTCATACTTTAGATAGATGCTGTTTTTGTTTCAAATAATCGGCTCTAGATTTGTATCCGCACTTTACCATTGAATTTAATGTTTGTTTTTCTTTATCTTATAGATTTTCGATCATTGTTTGGCGCCGAATACCGACGGTGACGGTACAGGTTGTGATAATATGACCTGTATTATAGTTCGTTTTGACAATCTTCCTGGTTGGGTTGAATATTACGAAAATAATAATAATAAAGGTAGTGTATTAATTGATTCAACTACCATATCAACGAACAACGCTAAATACACATCGACGACAA] [+] EMBL AI977332 [CAATGAAAATGATAATGATCGTGGTGAGGTCGATAAATTGGATTCGTCTGATCAATTAAGAAAAATTTGTCATGAAGTAAGACTGATAGTTTTTTTCCAGATTTTGTATCTGAGAGAACTGGCAAATAATATCGCTCTTGCTTTGTACAAAAGGAGATGTAGTTTAGTTGATTGTATAAGTTTTTATTACAAGTCTGATGGTGTTGAACACGTTTCTCTTTTTTGTAGTATATTCATACTTTAGATAGATGCTGTTTTTGTTTCAAATAATCGGCTCTAGATTTGTATCCGCACTTTACCATTGAATTTAATGTTTGTTTTTCTTTATCTTATAGATTTTCGATCATTGTTTGGCGCCGAATACCGACGGTGACGGTACAGGTTGTGATAATATGACCTGTATTATAGTTCGTTTTGACAATCTTCCTGGTTGGGTTGAATATTACGAAAATAATAATAATAAAGGTAGTGTATTAATTGATTCAACTACCATATCAACGAACAACGCTAAATACACATCGACGACAA] consensusID : consensus_8743#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 495 fasta sequence [GTTGCAGCTGGTGGAACTGTAACGCGTGATGGCCGAGTAAATGGTGGTCTTAATCTCAGTCGGGCTCTTGGTGATCATAGTTATAAGCAAACTCCAAATATTCCATTAACAGATCAAATGATCACACCATCCCCAGATGTTACTGAAATAGATTTAATTCCATCAGCGGATGAATTTTTAGTTATTGCATGTGATGGAGTATGGAATTCAATGACAAGTCAAGAGGTTGTAGAATTTATTCAGGATCGTTTACATCCTCCGACTATAAACAATAACAGTAGTAATAAAAACACTACAAACAATCATTCGAATCCCACCGCTGATGTCAATGAAAATGATAATGATCGTGGTGAGGTCGATAAATTGGATTCGTCTGATCAATTAAGAAAAATTTGTCATGAAATTTTCGATCATTGTTTGGCGCCGAATACCGACGGTGACGGTACAGGTTGTGATAATATGACCTGTATTATAGTTCGTTTTGACAATCTTCCT] [+] EMBL BF936117 [GTTGCAGCTGGTGGAACTGTAACGCGTGATGGCCGAGTAAATGGTGGTCTTAATCTCAGTCGGGCTCTTGGTGATCATAGTTATAAGCAAACTCCAAATATTCCATTAACAGATCAAATGATCACACCATCCCCAGATGTTACTGAAATAGATTTAATTCCATCAGCGGATGAATTTTTAGTTATTGCATGTGATGGAGTATGGAATTCAATGACAAGTCAAGAGGTTGTAGAATTTATTCAGGATCGTTTACATCCTCCGACTATAAACAATAACAGTAGTAATAAAAACACTACAAACAATCATTCGAATCCCACCGCTGATGTCAATGAAAATGATAATGATCGTGGTGAGGTCGATAAATTGGATTCGTCTGATCAATTAAGAAAAATTTGTCATGAAATTTTCGATCATTGTTTGGCGCCGAATACCGACGGTGACGGTACAGGTTGTGATAATATGACCTGTATTATAGTTCGTTTTGACAATCTTCCT] consensusID : consensus_8743#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 212 fasta sequence [AATGCACTACTGTATGTCAATTTCTTTAATTTTCTCTCCAAAAATTAAACAAACAAACAAAAAAACCAATGACAAGGATAGAGAGTGAGAGCAATCGACAAGGATACTACTATAACCTTGGTAACGGACGAAACGAACACCATTGAGAATAAAGACACGTAGAGAATTATTTTAAAATCTTTGTCATTTTTTGGGCAGTTGATTGCCTGAAT] [-] EMBL BF936099 [AATGCACTACTGTATGTCAATTTCTTTAATTTTCTCTCCAAAAATTAAACAAACAAACAAAAAAACCAATGACAAGGATAGAGAGTGAGAGCAATCGACAAGGATACTACTATAACCTTGGTAACGGACGAAACGAACACCATTGAGAATAAAGACACGTAGAGAATTATTTTAAAATC ] [+] EMBL CD075473 [ GACAAGGATAAAAAATGAGACTCATCGACAAGGATACTACTATAACCTTGGTAACGGACGAAACGAACACCATTGAGAATAAAGACACGTAGAGAATTATTTTAAAATCTTTGTCATTTTTTGGGCAGTTGATTGCCTGAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8743#0 --------------------------GAGCCTTTAATTCGGCAC-GCAGCTTAATCTCAG 33 consensus_8743#2 GTTGCAGCTGGTGGAACTGTAACGCGTGATGGCCGAGTAAATGG-TGGTCTTAATCTCAG 59 consensus_8743#1 --------------------------------------CAATGA-AAATGATAATGATCG 21 consensus_8743#3 ----------------------------------AATGCACTACTGTATGTCAATTTCTT 26 *** consensus_8743#0 TCGGGCTCTTGGTGA-TCATAGTTATAAG-CAAACTCCAAATATTCCATTAACAGATCAA 91 consensus_8743#2 TCGGGCTCTTGGTGA-TCATAGTTATAAG-CAAACTCCAAATATTCCATTAACAGATCAA 117 consensus_8743#1 TGGTGAGGTCGATAAATTGGATTCGTCTGATCAATTAAGAAAAATTTGTCATGAAGTAAG 81 consensus_8743#3 TAATTTTCTCTCCAA---AAATTAAACAAACAAAC--AAAAAAACCAATGACAAGGATAG 81 * * * * * ** ** * * * * * consensus_8743#0 ATGATCACACCATCCCCAGATGTTACTGAAATAGATTTAATTCCATCAGCGGATGAATTT 151 consensus_8743#2 ATGATCACACCATCCCCAGATGTTACTGAAATAGATTTAATTCCATCAGCGGATGAATTT 177 consensus_8743#1 ACTGATAGTTTTTTTCCAGATTTTGT--------ATCTGAGAGAACTGGCAAATAATATC 133 consensus_8743#3 AGAGTGAGAGCAATCGACAAGGATACTA------CTATAACCTTGGTAACGGACGAAACG 135 * * * * * * * * * * consensus_8743#0 TTAGTTATTGCATGTGATGGAGTATGGAATTCAATGACAAGTCAAGAGGTTGTAGAATTT 211 consensus_8743#2 TTAGTTATTGCATGTGATGGAGTATGGAATTCAATGACAAGTCAAGAGGTTGTAGAATTT 237 consensus_8743#1 GCTCTTGCTTTGTACAAAAGGAGATGTAGTTTAGTTGATTGT-ATAAGTTTTTATTACAA 192 consensus_8743#3 AACACCATTGAGAATAAAGACACGTAGAG---AATTAT---TTTAAAATCTTTGTCATTT 189 * * * * * * * * * * * consensus_8743#0 ATTCAGGATCGTTTACATCCTCCGACTATAAACAATAACAGTAGTAACAAAAACACTACA 271 consensus_8743#2 ATTCAGGATCGTTTACATCCTCCGACTATAAACAATAACAGTAGTAATAAAAACACTACA 297 consensus_8743#1 GTCTGATGGTGTTGAACACGTTTCTCT--------TTTTTGTAGTA-TATTCATACTTTA 243 consensus_8743#3 TTTGGGCA--GTTGATTGCCTGAAT----------------------------------- 212 * *** * * * consensus_8743#0 AACAATCATTCGAATCCCGCCGCTGATGTCAATGAAAATGATAATGATCGTGGTGAGGTC 331 consensus_8743#2 AACAATCATTCGAATCCCACCGCTGATGTCAATGAAAATGATAATGATCGTGGTGAGGTC 357 consensus_8743#1 GATAG--------ATGCTGTTTTTGTTTCAAATAATCGGCTCTAGATTTGTATCCGCACT 295 consensus_8743#3 ------------------------------------------------------------ consensus_8743#0 GATAAATTGGATTCGTCTGATCAATTAAGAAAAATTTGTCATGAAATTTTCGATCATTGT 391 consensus_8743#2 GATAAATTGGATTCGTCTGATCAATTAAGAAAAATTTGTCATGAAATTTTCGATCATTGT 417 consensus_8743#1 TTACCATTGAATTTAA-TGTTTGTTTTTCTTTATCTTAT----AGATTTTCGATCATTGT 350 consensus_8743#3 ------------------------------------------------------------ consensus_8743#0 TTGGCGCCGAATACCGACGGTGACGGTACAGGTTGTGATAATATGACCTGTTTTATAGTT 451 consensus_8743#2 TTGGCGCCGAATACCGACGGTGACGGTACAGGTTGTGATAATATGACCTGTATTATAGTT 477 consensus_8743#1 TTGGCGCCGAATACCGACGGTGACGGTACAGGTTGTGATAATATGACCTGTATTATAGTT 410 consensus_8743#3 ------------------------------------------------------------ consensus_8743#0 CGTTTTGACAATCTTCCTGGTTGGGTTGAATATTACGAAAATAATAATAATAAAGGTAGT 511 consensus_8743#2 CGTTTTGACAATCTTCCT------------------------------------------ 495 consensus_8743#1 CGTTTTGACAATCTTCCTGGTTGGGTTGAATATTACGAAAATAATAATAATAAAGGTAGT 470 consensus_8743#3 ------------------------------------------------------------ consensus_8743#0 GTATTAATTGATTCAACTACCATATCAACGAACAACGCTAAAAACACATCGACGACAACT 571 consensus_8743#2 ------------------------------------------------------------ consensus_8743#1 GTATTAATTGATTCAACTACCATATCAACGAACAACGCTAAATACACATCGACGACAA-- 528 consensus_8743#3 ------------------------------------------------------------ consensus_8743#0 AAACTATCACCAAGGAAACGACCAATTTCTCATGAACTCTCCGAGGATAATAATCATGTT 631 consensus_8743#2 ------------------------------------------------------------ consensus_8743#1 ------------------------------------------------------------ consensus_8743#3 ------------------------------------------------------------ consensus_8743#0 CATGATGATGAAACACATATTATTGTTATAGATACCAATGGAAACAATTCATCTCCTACC 691 consensus_8743#2 ------------------------------------------------------------ consensus_8743#1 ------------------------------------------------------------ consensus_8743#3 ------------------------------------------------------------ consensus_8743#0 ACTGATGATAGTCAGGCGACACAATGAAACGTCCAAAATTGGAATCTCACGAATCGGAGA 751 consensus_8743#2 ------------------------------------------------------------ consensus_8743#1 ------------------------------------------------------------ consensus_8743#3 ------------------------------------------------------------ consensus_8743#0 ATTCCACAGAAGCAACAATTACAAATGGGACAGGTAGCAGCGTTTACTAGTAATGTTATG 811 consensus_8743#2 ------------------------------------------------------------ consensus_8743#1 ------------------------------------------------------------ consensus_8743#3 ------------------------------------------------------------ consensus_8743#0 TATTTTATGAAGTGGAAATACAGGAAACAATGGCAGTTG 850 consensus_8743#2 --------------------------------------- consensus_8743#1 --------------------------------------- consensus_8743#3 --------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||