These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8744#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 900 fasta sequence [AAAATAACATGTCCGAACCGGAATAAAGTTTTCGGTGTAGTTCTTGATAGGTAATTATTTTGAAGATACTTGTCAAGTATGAGTTACGATTCAGTATGCTAAATCGTCCTTGACTGAGTGACAGCTTCAGTCTTTCTTTACTGACCGTCTATACCGTCTTGATTATGTCCTGACATGTTATTTACTTCCGTCTTACTTGGTTCAGAGTTTTGTTGTTCAACAATAACTGCTTCTTCTTCACTTATACCATCTTCACATTCATCTG-AATCGGAAGCATCTTGTGGTACAGAGTATATGCGAAGTACAGGCTTATTAGGATCCTTCAACATTAGATATTTGCCTTCAGGCATTTTCATGAAGAAATCAACGACACATCGCAGTATACCCCAAGCATTATCCATATTTAAATTCAGCTGATTGGCGAACTCAGATGGTTTGAACTGTTGTGTGCCCAATATGACATGGCGAGATGAGTCACGGGGGTTGACACGAGAAACAAATCCTAATTTTAGTTGATCTGCACCTGACAGTATACTACAGACAGTCCATCCAGCTAATTTAAAGGCATTATTCTTTATCTCAGCGGCCAAAACAGCCCCCCGTTGAGTATCAAGTTCCG-ACGGCCAATCGACACCACCGCAATAGCGTGAATCAAATTCATTTAGCGCGCGTATACATACGAATTGTGGAGTGGCTGGCTGATCATCACTAGTTGGTTGAAGTACACCATTCACCTCGCAACGAATAACCATCTGAACATCATTTCCCAAATCAAATATGCGATATCGATATCCTACAGAACCTAATTCTTCTTTACCACCTTCGTGATTTTTATTTTGAGATGGATTTGGACTATCCTCATCCTCCTCTTCATCATCTTTGAAAGGATTTTCTTCAGGG] [-] EMBL AW587524 [AAAATAACATGTCCGAACCGGAATAAAGTTTTCGGTGTAGTTCTTGATAGGTAATTATTTTGAAGATACTTGTCAAGTATGAGTTACGATTCAGTATGCTAAATCGTCCTTGACTGAGTGACAGCTTCAGTCTTTCTTTACTGACCGTCTATACCGTCTTGATTATGTCCTGACATGTTATTTACTTCCGTCTTACTTGGTTCAGAGTTTTGTTGTTCAACAATAACTGCTTCTTCTTCACTTATACCATCTTCACATTCATCTGAAATCGGcgtgccgaa ] [+] EMBL CD157350 [ GATTATGTCCTGACATGTTATTTACTTCCGTCTTACTTGGTTCAGAGTTTTGTTGTTCAACAATAACTGCTTCTTCTTCACTTATACCATCTTCACATTCATCTG AATCGGAAGCATCTTGTGGTACAGAGTATATGCGAAGTACAGGCTTATTAGGATCCTTCAACATTAGATATTTGCCTTCAGGCATTTTCATGAAGAAATCAACGACACATCGCAGTATACCCCAAGCATTATCCATATTTAAATTCAGCTGATTGGCGAACTCAGATGGTTTGAACTGTTGTGTGCCCAATATGACATGGCGAGATGAGTCACGGGGGTTGACACGAGAAACAAATCCTAATTTTAGTTGATCTGGACCTGACAGTAT ] [-] EMBL CD140136 [ gtcgggACTTGGTTCAGAGTTTTGTTGTTCAACAATAACTGCTTCTTCTTCACTTATACCATCTTCACATTCATCTG AATCGGAAGCATCTTGTGGTACAGAGTATATGCGAAGTACAGGCTTATTAGGATCCTTCAACATTAGATATTTGCCTTCAGGCATTTTCATGAAGAAATCAACGACACATCGCAGTATACCCCAAGCATTATCCATATTTAAATTCAGCTGATTGGCGAACTCAGATGGTTTGAACTGTTGTGTGCCCAATATGACATGGCGAGATGAGTTACGGGGGTTGACACGAGAAACAAATCCTAATTTTAGTTGATCTGCACCTGACAGTATACTACAGACAGTCCATCCAGCTAATTTAAAGGCATTATTCTCTATCTCAGCGGCCAAAACAGCCCCCCGTTGAGTATCAAGTCCCG ACG ] [+] EMBL CD161613 [ G AATCGGAAGCATCTTGTGGTACAGAGTATATGCGAAGTACAGGCTTATTAGGATCCTTCAACATTAGATATTTGCCTTCAGGCATTTTCATGAAGAAATCAACGACACATCGCAGTATACCCCAAGCATTATCCATATTTAAATTCAGCTGATTGGCGAACTCAGATGGTTTGAACTGTTGTGTGCCCAATATGACGTGGCGAGATGAGTCACGGGGGTTGACACGAGAAACAAATCCTAATTTTAGTTGATCTGCACCTGACAGTATACTACAGACAGTCCATCCAGCTAATTTAAAGGCATTATTCTTTATCTCAGCGGCCAAAACAGCCCCCCGTTGAGTATCAAGTTTAGTAC GCCAATCGACACCACCGCAATAGCGTGAATCAAATTCATTTAGCGCGCGTATACATACGAATTGTGGAGTGGCTGGCTGATCATCACTAGTTGGTTGAAGTACACCATTCACCTCGCAACGAATAACCATCTGAACATCATTTCCCAAATCAAATATGCGATATCGATATCCTACAGAACCTAATTCTTCTTTACCACCTTCGTGATTTTTATTTTGAGATGGATTTGGACTATCCTCATCCTCCTCTTCATCATCTTTGAAAGGATTTTCTTCAGGG] [-] EMBL CD095535 [ GGCGAGATGAGTCACGGGGGTTGACACGAGAAACAAATCCTAATTTTAGTTGATCTGCACCTGACAGTATACTACAGACAGTCCATCCAGCTAATTTAAAGGCATTATTCTTTATCTCAGCGGCCAAAACAGCCCCCCGTTGAGTATCAAGTT ] consensusID : consensus_8744#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 243 fasta sequence [TTAATAGGTAATTATTTTGAAGATACTTGTCAAGTATGAGTTACGATTCAGTATGCTCAATCGTCCTTGACTGAGTGACAGCATCAGTCTTTCTTTACTGACCGTCTATACCGTCTTGATTATGTCCTGACATGTTATTTACTTCCGTCTTACTTGGTTCAGAGTTTTGTTGTTCAACAATAACTGCTTCTTCTTNACTTATACCATCTTNACATTCATATGAATTCGGTGTGCCGAATTGCA] [-] EMBL AI764897 [TTAATAGGTAATTATTTTGAAGATACTTGTCAAGTATGAGTTACGATTCAGTATGCTCAATCGTCCTTGACTGAGTGACAGCATCAGTCTTTCTTTACTGACCGTCTATACCGTCTTGATTATGTCCTGACATGTTATTTACTTCCGTCTTACTTGGTTCAGAGTTTTGTTGTTCAACAATAACTGCTTCTTCTTNACTTATACCATCTTNACATTCATATGAATTCGGTGTGCCGAATTGCA] consensusID : consensus_8744#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 232 fasta sequence [CAGCCCCCCGTTGAGTATCAAGTTTAGTACGCCAATCGACACCACCGCAATAGCGTGAATCAAATTCATTTAGCGCGCGTATACATACGAATTGTGGAGTGGCTGGCTGATCATCACTAGTTGGTTGAAGTACACCATTCACCTCGCAACGAATAACCATCTGAACATCATTTCCCAAATCAAATATGCGATATCGATATCCTACAGACCCCCTCGGACCGAATCTGGCCTG] [-] EMBL CD078011 [CAGCCCCCCGTTGAGTATCAAGTTTAGTACGCCAATCGACACCACCGCAATAGCGTGAATCAAATTCATTTAGCGCGCGTATACATACGAATTGTGGAGTGGCTGGCTGATCATCACTAGTTGGTTGAAGTACACCATTCACCTCGCAACGAATAACCATCTGAACATCATTTCCCAAATCAAATATGCGATATCGATATCCTACAGACCCCCTCGGACCGAATCTGGCCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8744#0 AAAATAACATGTCCGAACCGGAATAAAGTTTTCGGTGTAGTTCTTGATAGGTAATTATTT 60 consensus_8744#1 -------------------------------------------TTAATAGGTAATTATTT 17 consensus_8744#2 ------------------------------------------------------------ consensus_8744#0 TGAAGATACTTGTCAAGTATGAGTTACGATTCAGTATGCTAAATCGTCCTTGACTGAGTG 120 consensus_8744#1 TGAAGATACTTGTCAAGTATGAGTTACGATTCAGTATGCTCAATCGTCCTTGACTGAGTG 77 consensus_8744#2 --CAGCCCCCCGTTGAGTATCAA-----GTTTAGTACGC-CAATCGACACCACCGCAATA 52 ** * ** ***** * ** **** ** ***** * * * * consensus_8744#0 ACAGCTTCAGTCTTTCTTTACTGACCGTCTATACCGTCTTGATTATGTCCTGACATGTTA 180 consensus_8744#1 ACAGCATCAGTCTTTCTTTACTGACCGTCTATACCGTCTTGATTATGTCCTGACATGTTA 137 consensus_8744#2 GCGTGAATCAAATTCATTTAGCGCGCGTATA---CATACGAATTGTGGAGTGGCTGGCTG 109 * ** **** * *** ** * * *** ** ** * * * consensus_8744#0 TTTACTTCCGTCTTACTTGGTTCAGAGTTTTGTTGTTCAAC-AATAACTGCTT------- 232 consensus_8744#1 TTTACTTCCGTCTTACTTGGTTCAGAGTTTTGTTGTTCAAC-AATAACTGCTT------- 189 consensus_8744#2 ATCATCACTAGTTGGTTGAAGTACACCATTCACCTCGCAACGAATAACCATCTGAACATC 169 * * * * * * ** **** ****** * consensus_8744#0 -CTTCTTCACT----TATACCATCTTCACATTCATCTGAATCGGAAGCATCTTGTGGTAC 287 consensus_8744#1 -CTTCTTNACT----TATACCATCTTNACATTCATATGAATTCGGTGTGCCGAATTGCA- 243 consensus_8744#2 ATTTCCCAAATCAAATATGCGATATCGATATCCTACAGACCCCCTCGGACCGAATCTGGC 229 *** * * *** * ** * * ** * ** * * * consensus_8744#0 AGAGTATATGCGAAGTACAGGCTTATTAGGATCCTTCAACATTAGATATTTGCCTTCAGG 347 consensus_8744#1 ------------------------------------------------------------ consensus_8744#2 CTG--------------------------------------------------------- 232 consensus_8744#0 CATTTTCATGAAGAAATCAACGACACATCGCAGTATACCCCAAGCATTATCCATATTTAA 407 consensus_8744#1 ------------------------------------------------------------ consensus_8744#2 ------------------------------------------------------------ consensus_8744#0 ATTCAGCTGATTGGCGAACTCAGATGGTTTGAACTGTTGTGTGCCCAATATGACATGGCG 467 consensus_8744#1 ------------------------------------------------------------ consensus_8744#2 ------------------------------------------------------------ consensus_8744#0 AGATGAGTCACGGGGGTTGACACGAGAAACAAATCCTAATTTTAGTTGATCTGCACCTGA 527 consensus_8744#1 ------------------------------------------------------------ consensus_8744#2 ------------------------------------------------------------ consensus_8744#0 CAGTATACTACAGACAGTCCATCCAGCTAATTTAAAGGCATTATTCTTTATCTCAGCGGC 587 consensus_8744#1 ------------------------------------------------------------ consensus_8744#2 ------------------------------------------------------------ consensus_8744#0 CAAAACAGCCCCCCGTTGAGTATCAAGTTCCGACGGCCAATCGACACCACCGCAATAGCG 647 consensus_8744#1 ------------------------------------------------------------ consensus_8744#2 ------------------------------------------------------------ consensus_8744#0 TGAATCAAATTCATTTAGCGCGCGTATACATACGAATTGTGGAGTGGCTGGCTGATCATC 707 consensus_8744#1 ------------------------------------------------------------ consensus_8744#2 ------------------------------------------------------------ consensus_8744#0 ACTAGTTGGTTGAAGTACACCATTCACCTCGCAACGAATAACCATCTGAACATCATTTCC 767 consensus_8744#1 ------------------------------------------------------------ consensus_8744#2 ------------------------------------------------------------ consensus_8744#0 CAAATCAAATATGCGATATCGATATCCTACAGAACCTAATTCTTCTTTACCACCTTCGTG 827 consensus_8744#1 ------------------------------------------------------------ consensus_8744#2 ------------------------------------------------------------ consensus_8744#0 ATTTTTATTTTGAGATGGATTTGGACTATCCTCATCCTCCTCTTCATCATCTTTGAAAGG 887 consensus_8744#1 ------------------------------------------------------------ consensus_8744#2 ------------------------------------------------------------ consensus_8744#0 ATTTTCTTCAGGG 900 consensus_8744#1 ------------- consensus_8744#2 ------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||