These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8746#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 845 fasta sequence [GTTTCCTGGTTTGAAGCTATAAAAGTATTGCTTTTGACTGGAAATCTATATTTTGTATCTACACCCTTAAAATTTTCTAACTTTTTGGAACAGCAGGAGTATTCAGTATCAAACACCGGATAAGGGGAAAATGAGCGCTTGATTGGAGATTTTGACCTCTTAGTCAGTGATGTAGTACGTCTGACTGATTTGAGACTACGCCCCATCTTTACTGTTAAATTTCGTTTATGGCTAATTGAATTATCATGGGTAGTGCTTTTTGATCGCACTCTCATAGAAAAGCGGGACTGCAC-TTCCTTAGTAGATCGAATGCGATGACTAATTGGAGATGTGTTTCGACGCTGAACAATAAATGACCCGAGCTCTCTAACGGCATCCAACATTTTCTCACAAGCTTCCTGATTTTCTTTTAAATTCTTTTTTGACGGATTTCTATATTTAGTAAGGCGGTCATTTTCCAAAATCTTATTAACAGCAATATGCAATTTTTTCAAATGACTCTTGAAATTCTGTGAAGACGGTTCAACACATATGTTAGGAATATTTGTTTCAGGTCTTTTATATAGAGCAGGTCTTCTGACT-GGTTCATTGCCCACTATAACATCTGCAACACCAGGACCCTCAAAAGGAGTATTCCGGGTATCGCTTCTTCCTGAAGCTTTAGGTACTGAAGTTTCTGATTTAGTGTGGTATGTGTATTGTAAGTTNTCATCTGTAGATTCAGAGGCGCTCATTTCATCACCATTCGAAAACAAATCAAGCTCAAAATTTTCTTTAGATGATTAATCAAACCGAATTAAAGCTTTACAATCAACTTGACGCGTGGCTACTCCAGTCTATTATAT] [+] EMBL CD189248 [GTTTCCTGGTTTGAAGCTATAAAAGTATTGCTTTTGACTGGAAATCTATATTTTGTATCTACACCCTTGAAATTTTCTAACTTTTTGGAACAGCAGGAGTATTCAGTATCAAACACCGGATAAGGGGAAAATGAGCGCTTGATTGGAGATTTTGACCTCTTAGTCAGTGATGTAGTACGTCTGACTGATTTGAGACTACGCCCCATCTTTACTGTTAAATTTCGTTTATGGCTAATTGAATTATCATGGGTAGTGCTTTTTGATCGCACTCTCATAGAAAAGCGGGACTGCAC TTCCTTAGT ] [+] EMBL CD190016 [ctgTCCTGGTTTGAAGCTATGAAGGTATCGCTTTTGACTGGAAATCTATATTTTGTATCTACACCCTTAAAATTTTCTAACTTTTTGGAACAGCAGGAGTATTCAGTATCAAACACCGGATAAGGGGAAATTGAGCGCTTGATTGGAGATTTTGACCTCTTCGTCAATGATGTAGTACGTCTGACTGATTTGAGACTACGCCCCATCTTCACTGTTAAATTTCGTTTATGGCTAATTGAATCATCATGGGTAGTGCTTTTTGATCGCACTCTCATAGAAAAGCGAGACTGCAC TTCCTTAGTAGATCGAATGCGATGACTAATTGGAGATGTGTTTCGACGCTGAACAATAAATGACCCGAGCTCTCTAACGGCATCCAACATTTTCTCACAGGCTTCCTGATTTTCTTTTAAATTTTTTTTTGACGGATTTCTATATTTAGTAAGGCGGTCATTTTCCAAAATCTTATTAACAGCAATATGCAATTTTTTCAAATGACTCTTGNAATTTTGTGAAGACGGTTCAACACATATGTTAGGAATATTTGTTTCAGGTCTTTTATAT GAGCAGGTCTTCTGACTGGGGTCATTTGCCA TATAc ] [+] EMBL CD072308 [ CTATATTTTGTATCTACACCCTTAAAATTTTCTAACTTTTTGGAACAGCAGGAGTATTCAGTATCAAACACCGGATAAGGGGAAATTGAGCGCTTGATTGGAGATTTTGACCTCTTCGTCAATGATGTAGTACGTCTGACTGATTTGAGACTACGCCCCATCTTCACTGCTAAATTTCGTTTATGGCTAATTGAATCATCATGGGTAGTGCTTTTTGATCGCACTCTCATAGAAGAGCGAGACTGCACTTTCTTTAGTAGATCGAAT ] [+] EMBL CD155732 [ TCAAACACCGGATAAGGGGAAAATGAGCGCTTGATTGGAGATTTTGACCTCTTAGTCAGTGATGTAGTACGTCTGACTGATTTGAGACTACGCCCCATCTTTACTGTTAAATTTCGTTTATGGCTAATTGAATTATCATGGGTAGTGCTTTTTGATCGCACTCTCATAGAAAAGCGGGACTGCAC TTCCTTAGTAGATCGAATGCGATGACTAATTGGAGATGTGTTTCGACGCTGAACAATAAATGACCCGAGCTCTCTAACGGCATCCAACATTTTCTCACAAGCTTCCTGATTTTCTTTTAAATTCTTTTTTGACGGATTTCTATATTTAGTAAGGCGGTCATTTTCCAAAATCTTATTAACAGCAATATGCAATTTTTTCAAATGACTCTTGAAATTCTGTGAAGACGGTTCAACACATATGTTAGGAATATTTGTTTCAGGTCTTTTATATAGAGCAGGTCTTCTGACT GGTTCATTGCCCACTATAACATCTGCAACACCAGGACCCTCAAAAGGAGTATTCCGGGTATCGCTTCTTCCTGAAGCTTTAGGTACTGAAGTTTCTGATTTAGTGTGGTATGTGTATTGTAAGTTNTCATCTGTAGATTCAG ] [-] EMBL CD183454 [ CGCGCTCTCATAGAAAAGCGGGACTGCAC TTCCTTAGTAGATCGAATGCGATGACTAATTGGAGATGTGTTTCGACGCTGAACAATAAATGACCCGAGCTCTCTAACGGCATCCAACATTTTCTCACAAGCTTCCTGATTTTCTTTTAAATTCTTTTTTGACGGATTTCTATATTTAGTAAGGCGGTCATTTTCCAAAATCTTATTAACAGCAATATGCAATTTTTTCAAATGACTCTTGAAATTCTGTGAAGACGGTTCAACACATATGTTAGGAATATTTGTTTCAGGTCTTTTATATAGAGCAGGTCTTCTGACT GGTTCATTGCCCACTATAACATCTGCAACACCAGGACCCTCAAAAG ] [+] EMBL CD169254 [ TAGTAAGGCGGTCATTTTCCAAAATCTTATTAACAGCAATATGCAATTTTTTCAAATGACTCTTGAAATTCTGTGAAGACGGTTCAACACATATGTTAGGAATATTTGTTTCAGGTCTTTTATATAGAGCAGGTCTTCTGACT GGTTCATTGCCCACTATAACATCTGCAACACCAGGACCCTCAAAAGGAGTATTCCGGGTATCGCTTCTTCCTGAAGCTTTAGGTACTGAAGTTTCTGATTTAGTGTGGTATGTGTATTGTAAGTTTTCATCTGTAGATTCAGAGGCGCTCATTTCATCACCATTCGAAAACAAATCAAGCTCAAAATTTTCTTTAGATGATTAATCAAACCGAATTAAAGCTTTACAATCAACTTGACGCGTGGCTACTCCAGTCTATTATAT] consensusID : consensus_8746#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 353 fasta sequence [ACTATAAGAATCGAATAGTAACTCACAACACATATGTTAGGAATATTTGTTTCAGGTCTTTTATATAGAGCAGGTCTTCTGACTGGTTCATTGCCCACTATAACATCTGCAACACCAGGACCCTCAAAAGGAGTATTCCGGGTATCGCTTCTTCCTGAAGCTTTAGGTACTGAAGTTTCTGATTTAGTGTGGTATGTGTATTGTAAGTTTTCATCTGTAGATTCAGAGGCGCTCATTTCATCACCATTCGAAAACAAATCAAGCTCAAAATTTTCTTTAGATGATTAATCAAACCGAATTAAAGCTTACAATCAACTTGACGCGTGGCTACTCCAGTCTATTATATCAAACGA] [-] EMBL CD189278 [ACTATAAGAATCGAATAGTAACTCACAACACATATGTTAGGAATATTTGTTTCAGGTCTTTTATATAGAGCAGGTCTTCTGACTGGTTCATTGCCCACTATAACATCTGCAACACCAGGACCCTCAAAAGGAGTATTCCGGGTATCGCTTCTTCCTGAAGCTTTAGGTACTGAAGTTTCTGATTTAGTGTGGTATGTGTATTGTAAGTTTTCATCTGTAGATTCAGAGGCGCTCATTTCATCACCATTCGAAAACAAATCAAGCTCAAAATTTTCTTTAGATGATTAATCAAACCGAATTAAAGCTTACAATCAACTTGACGCGTGGCTACTCCAGTCTATTATATCAAACGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8746#0 GTTTCCTGGTTTGAAGCTATAAAAGTATTGCTTTTGACTGGAAATCTATATTTTGTATCT 60 consensus_8746#1 ------------------------------------------------------------ consensus_8746#0 ACACCCTTAAAATTTTCTAACTTTTTGGAACAGCAGGAGTATTCAGTATCAAACACCGGA 120 consensus_8746#1 ------------------------------------------------------------ consensus_8746#0 TAAGGGGAAAATGAGCGCTTGATTGGAGATTTTGACCTCTTAGTCAGTGATGTAGTACGT 180 consensus_8746#1 ------------------------------------------------------------ consensus_8746#0 CTGACTGATTTGAGACTACGCCCCATCTTTACTGTTAAATTTCGTTTATGGCTAATTGAA 240 consensus_8746#1 ------------------------------------------------------------ consensus_8746#0 TTATCATGGGTAGTGCTTTTTGATCGCACTCTCATAGAAAAGCGGGACTGCACTTCCTTA 300 consensus_8746#1 ------------------------------------------------------------ consensus_8746#0 GTAGATCGAATGCGATGACTAATTGGAGATGTGTTTCGACGCTGAACAATAAATGACCCG 360 consensus_8746#1 ------------------------------------------------------------ consensus_8746#0 AGCTCTCTAACGGCATCCAACATTTTCTCACAAGCTTCCTGATTTTCTTTTAAATTCTTT 420 consensus_8746#1 ------------------------------------------------------------ consensus_8746#0 TTTGACGGATTTCTATATTTAGTAAGGCGGTCATTTTCCAAAATCTTATTAACAGCAATA 480 consensus_8746#1 ------------------------------------------------------------ consensus_8746#0 TGCAATTTTTTCAAATGACTCTTGAAATTCTGTGAAGACGGTTCAACACATATGTTAGGA 540 consensus_8746#1 -----------------ACTATAAGAATCGAATAGTAACT-CACAACACATATGTTAGGA 42 *** * *** * ** ***************** consensus_8746#0 ATATTTGTTTCAGGTCTTTTATATAGAGCAGGTCTTCTGACTGGTTCATTGCCCACTATA 600 consensus_8746#1 ATATTTGTTTCAGGTCTTTTATATAGAGCAGGTCTTCTGACTGGTTCATTGCCCACTATA 102 ************************************************************ consensus_8746#0 ACATCTGCAACACCAGGACCCTCAAAAGGAGTATTCCGGGTATCGCTTCTTCCTGAAGCT 660 consensus_8746#1 ACATCTGCAACACCAGGACCCTCAAAAGGAGTATTCCGGGTATCGCTTCTTCCTGAAGCT 162 ************************************************************ consensus_8746#0 TTAGGTACTGAAGTTTCTGATTTAGTGTGGTATGTGTATTGTAAGTTNTCATCTGTAGAT 720 consensus_8746#1 TTAGGTACTGAAGTTTCTGATTTAGTGTGGTATGTGTATTGTAAGTTTTCATCTGTAGAT 222 *********************************************** ************ consensus_8746#0 TCAGAGGCGCTCATTTCATCACCATTCGAAAACAAATCAAGCTCAAAATTTTCTTTAGAT 780 consensus_8746#1 TCAGAGGCGCTCATTTCATCACCATTCGAAAACAAATCAAGCTCAAAATTTTCTTTAGAT 282 ************************************************************ consensus_8746#0 GATTAATCAAACCGAATTAAAGCTTTACAATCAACTTGACGCGTGGCTACTCCAGTCTAT 840 consensus_8746#1 GATTAATCAAACCGAATTAAAGCTT-ACAATCAACTTGACGCGTGGCTACTCCAGTCTAT 341 ************************* ********************************** consensus_8746#0 TATAT------- 845 consensus_8746#1 TATATCAAACGA 353 ***** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||