These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8753#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1070 fasta sequence [GGCCATTAATTCGGCACGCAGATTATCAGTATGTTTTATCGAGCAATATATCGTGTTCTGGCGTATTAGATATAAGTTGGCTAAATGGTAATGTCGCAATCGGTGCATTGGCAAATGGTTCAACAAAACTATGGAACTGTACTGATGATAGTCCCTCTATAATTGAATTAATGGATTTTCCAGTATCTGACCATATTCTACTATCTGTCGATACGTGTTCTGATAGGTCAGGTTAAAATAGTAATAATAACTACTGTGAATCTGAAAATCCTTGCAGATTTGTTTTCAGTGATTCAGGTGGGAATATTAGTGTGTGGAAGATCGACGCATCATCCTGTTCAAGTCCTCAATCAATTAATAAGTGGCCTGGGCACGAATTTGAAGCTTGGTGTGCATGCTTAAATAAGTGGAACAGTGAAATAGTCTTCACAGGTAGTGATGATTCAAAATGTTGTGTTTGGGATCTACGTAAAGAATGTAAAAAGCCGTTGAATATCATCAGACATAGTGTGGGTGTTTGCAGCATTCAAAATTATCCTGACGTAGATTATTCTATTTCTACCGGAAGAAATGTCAGTTCGATGGTGGAGTTTGGCGTCATAAATGGGGTCCACAAAATTATGTTATAGTCAGTGCAATACATGATGGTTTTGCTGTTGCACACTTACCATTACGTTCACCGTTTAATCACAAAGCAGAAGATAAAGAGGATTCTGTATATAAATTTCGTTTGACTAATGAACAATTAGCCTATGGTATTGACTGGTCATTCAATCATAAAATTAATCAGTTGAAAAGTGATTNTATGAAATCGACTGTAGTTTCTTGTTCATTNNTATGAC-ATACTATAGAATTCGGTGAACTTATTNGTT-AGTTATAAATCNG-NNTATATTATCTAAACTAAATC-AATATTGTGTTTGTGTAC-AAGTAAACTGATAGCTGGGTATTTGTA-TTATA-TTCATCAAA-TCTTTGNG-ATAGCTA-TTCATGTTAA-TAA-TG-TTTATG-TCTGATC-TA-TATA-CAAANGG-ATTTT-ATTTG--AGTGTTG-AT-ACTG-CCAGATTT--TGCGAATATAGAGGAGT] [+] EMBL CD081790 [GGCCATTAATTCGGCACGCAGATTATCAGTATGTTTTATCGAGCAATATATCGTGTTCTGGCGTATTAGATATAAGTTGGCTAAATGGTAATGTCGCAATCGGTGCATTGGCAAATGGTTCAACAAAACTATGGAACTGTACTGATGATAGTCCCTCTATAATTGAATTAATGGATTTTCCAGTATCTGACCATATTCTACTATCTGTCGATACGTGTTCTGATAGGTCAGGTTAAAATAGTAATAATAACTACTGTGAATCTGAAAATCCTTGCAGATTTGTTTTCAGTGATTCAGGTGGGAATATTAGTGTGTGGAAGATCGACGCATCATCCTGTTCAAGTCCTCAATCAATTAATAAGTGGCCTGGGCACGAATTTGAAGCTTGGTGTGCATGCTTAAATAAGTGGAACAGTGAAATAGTCTTCACAGGTAGTGATGATTCAAAATGTTGTGTTTGGGATCTACGTAAAGAATGTAAAAAGCCGTTGAATATCATCAGACATAGTGTGGGTGTTTGCAGCATTCAAAATTATCCTGACGTAGATTATTCTATTTCTACCGGAAGAAATGTCAGTTCGATGGTGGAGTTTGGCGTCATAAATGGGGTCCACAAAATTATGTTATAGTCAGTGCAATACATGATGGTTTTGCTGTTGCACACTTACCATTACGTTCACCGTTTAATCACAAAGCAGAAGATAAAGAGGATTCTGTATATAAATTTCGTTTGACTAATGAACAATTAGCCTATGGTATTGACTGGTCATTCAATCATAAAATTAATCAGTTGAAAAGTGATTNTATGAAATCGACTGTAGTTTCTTGTTCATTNNTATGAC ATACTATAGAATTCGGTGAACTTATTNGTT AGTTATAAATCNG NNTATATTATCTAAACTAAATC AATATTGTGTTTGTGTAC AAGTAAACTGATAGCTGGGTATTTGTA TTATA TTCATCAAA TCTTTGNG ATAGCTA TTCATGTTAA TAA TG TTTATG TCTGATC TA TATA CAAANGG ATTTT ATTTG AGTGTTG AT ACTG CCAGATTT TGCGAATATAGAG ] [-] EMBL CD065719 [ TGATGATAGTCCCTCTATAATTGAATTAATGGATTTTCCAGTATCTGACCATATTCTACTATCTGTCGATACGTGTTCTGATAGGTCAGGTTAAAATAGTAATAATAACTACTGTGAATCTGAAAATCCTTGCAGATTTGTTTTCAGTGATTCAGGTGGGAATATTAGAGTGTGGAAGATCGACGCATCATCCTGTTCAAGTCCTCAATCAATTAATAAGTGGCCTGGGCACGAATTTGAAGCTTGGTGTGCATGCTTAAATAAGTGGAACAGTGAAATAGTCTTCACAGGTAGTGATGATTC AAATGTTGTGTTTGGGATCTACGTAAAGAATGTAAAAAGCCGTgata ] [-] EMBL CD065690 [ TGATGATAGTCCCTCTATAATTGAATTAATGGATTTTCCAGTATCTGACCATATTCTACTATCTGTCGATACGTGTTCTGATAGGTCAGGTTAAAATAGTAATAATAACTACTGTGAATCTGAAAATCCTTGCAGATTTGTTTTCAGTGATTCAGGTGGGAATATTAGTGTGTGGAAGATCGACGCATCATCCTGTTCAAGTCCTCAATCAATTAATAAGTGGCCTGGGCACGAATTTGAAGCTTGGTGTGCATGCTTAAATAAGTGGAACAGTGAAATAGTCTTCACAGGTAGTGATGATTCAAAATGTTGTGTTT GGATCTACGTAAAGAATGTAAAAAGCCt ] [+] EMBL CD065697 [ CTATAATTGAATTAA GGA TTTCCAGTATCTGACCATATTCTACTATCTGTCGATACGTGTTCTGATAGGTCAGGTTAAAATAGTAATAATAACTACTGTGAATCTGAAAATCCTTGCAGATTTGTTTTCAGTGATTCAGGTGGGAATATTAGTGTGTGGAAGATCGACGCATCATCCTGTTCAAGTCCTCAATCAATTAATAAGTGGCCTGGGCACGAATTTGAAGCTTGGTGTGCATGCTTAAATAAGTGGAACAGTGAAATAGTCTTCACAGGTAGTGATGATTCAAAATGTTGTGTTTGGGATCTACGTAAAGAATGTAAAAAGCCGTTGAATA ] [-] EMBL CD075521 [ TAAGTGGAACAGTGAAATAGTCTTCACAGGTAGTGATGATTCAAAATGTTGTGTTTGGGATCTACGTAAAGAATGTAAAAAGCCGTTGAATATCATCAGACATAGTGTGGGTGTTTGCAGCATTCAAAATTATCCTGACGTAGATTATTCTATTTCTACCGGAAAAAATGTCAGTTCGATGGTGGAGTTTGGCGTCATAAATGGGGTCCCCAAAATTATGTTATAGTCAGTGCAATACATGATGGTTTTGCTGTTGCACACTTACCATTACGTTCCCCGTTTAATCCCAAAGCAGAAGATAAAGAGGATTCTGTATATAAATTTCGTTTGACTAATGAACAATTAGCCTATGGTATTGACTGGTCATTCAATCATAAAATTAATCAGTTGAAAAGTGATTTTATGAAATCGACTGTAGTTTCTTGTTCATT TTATGACAATACTATAGAATTCGGTGAACTTATT GTTAAGTTATAAATCGGTAATAT TTATTTAAACTAAATCAAATATTGTGTTTGTGTACAAAGTAAACTGATAGCTGGGTATTTGTATTTATATTTCATCAAATTCTTTGTGTATAGCTATTTCATGTTAATTAATTGTTTTATGTTCTGATCTTATTATACCAAAAGGTATTTTAATTTGAAAGTGTTGAATGACTGTCCAGATTTTATGCGAA ATAGAAGAGT] [-] EMBL CD091810 [ TGATGGTTTTGCTGTTGCACACTTACCATTACGTTCACCGTTTAATCACAAAGCAGAAGATAAAGAGGATTCTGTATATAAATTTCGTTTGACTAATGAACAATTAGC ] consensusID : consensus_8753#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 276 fasta sequence [GAACTGTACTGATGATAGTCCCTCTATAATTGAATTAATGGATTTTCCAGTATCTGACCATATTCTACTATCTGTCGATACGTGTTCTGATAGATTTGTTTTCAGTGATTCAGGTGGGAATATTAGTGTGTGGAAGATCGACGCATCATCCTGTTCAAGTCCTCAATCAATTAATAAGTGGCCTGGGCACGAATTTGAGGCTTGGTGTGCATGCTTAAATAAGTGGAACAGTGAAATAGTCTTCACAGGTAGTGATGATTCAAAATGTTGTGTTTG] [+] EMBL CD128369 [GAACTGTACTGATGATAGTCCCTCTATAATTGAATTAATGGATTTTCCAGTATCTGACCATATTCTACTATCTGTCGATACGTGTTCTGATAGATTTGTTTTCAGTGATTCAGGTGGGAATATTAGTGTGTGGAAGATCGACGCATCATCCTGTTCAAGTCCTCAATCAATTAATAAGTGGCCTGGGCACGAATTTGAGGCTTGGTGTGCATGCTTAAATAAGTGGAACAGTGAAATAGTCTTCACAGGTAGTGATGATTCAAAATGTTGTGTTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8753#0 GGCCATTAATTCGGCACGCAGATTATCAGTATGTTTTATCGAGCAATATATCGTGTTCTG 60 consensus_8753#1 ------------------------------------------------------------ consensus_8753#0 GCGTATTAGATATAAGTTGGCTAAATGGTAATGTCGCAATCGGTGCATTGGCAAATGGTT 120 consensus_8753#1 ------------------------------------------------------------ consensus_8753#0 CAACAAAACTATGGAACTGTACTGATGATAGTCCCTCTATAATTGAATTAATGGATTTTC 180 consensus_8753#1 -------------GAACTGTACTGATGATAGTCCCTCTATAATTGAATTAATGGATTTTC 47 *********************************************** consensus_8753#0 CAGTATCTGACCATATTCTACTATCTGTCGATACGTGTTCTGATAGGTCAGGTTAAAATA 240 consensus_8753#1 CAGTATCTGACCATATTCTACTATCTGTCGATACGTGTTCTGATAG-------------- 93 ********************************************** consensus_8753#0 GTAATAATAACTACTGTGAATCTGAAAATCCTTGCAGATTTGTTTTCAGTGATTCAGGTG 300 consensus_8753#1 -------------------------------------ATTTGTTTTCAGTGATTCAGGTG 116 *********************** consensus_8753#0 GGAATATTAGTGTGTGGAAGATCGACGCATCATCCTGTTCAAGTCCTCAATCAATTAATA 360 consensus_8753#1 GGAATATTAGTGTGTGGAAGATCGACGCATCATCCTGTTCAAGTCCTCAATCAATTAATA 176 ************************************************************ consensus_8753#0 AGTGGCCTGGGCACGAATTTGAAGCTTGGTGTGCATGCTTAAATAAGTGGAACAGTGAAA 420 consensus_8753#1 AGTGGCCTGGGCACGAATTTGAGGCTTGGTGTGCATGCTTAAATAAGTGGAACAGTGAAA 236 ********************** ************************************* consensus_8753#0 TAGTCTTCACAGGTAGTGATGATTCAAAATGTTGTGTTTGGGATCTACGTAAAGAATGTA 480 consensus_8753#1 TAGTCTTCACAGGTAGTGATGATTCAAAATGTTGTGTTTG-------------------- 276 **************************************** consensus_8753#0 AAAAGCCGTTGAATATCATCAGACATAGTGTGGGTGTTTGCAGCATTCAAAATTATCCTG 540 consensus_8753#1 ------------------------------------------------------------ consensus_8753#0 ACGTAGATTATTCTATTTCTACCGGAAGAAATGTCAGTTCGATGGTGGAGTTTGGCGTCA 600 consensus_8753#1 ------------------------------------------------------------ consensus_8753#0 TAAATGGGGTCCACAAAATTATGTTATAGTCAGTGCAATACATGATGGTTTTGCTGTTGC 660 consensus_8753#1 ------------------------------------------------------------ consensus_8753#0 ACACTTACCATTACGTTCACCGTTTAATCACAAAGCAGAAGATAAAGAGGATTCTGTATA 720 consensus_8753#1 ------------------------------------------------------------ consensus_8753#0 TAAATTTCGTTTGACTAATGAACAATTAGCCTATGGTATTGACTGGTCATTCAATCATAA 780 consensus_8753#1 ------------------------------------------------------------ consensus_8753#0 AATTAATCAGTTGAAAAGTGATTNTATGAAATCGACTGTAGTTTCTTGTTCATTNNTATG 840 consensus_8753#1 ------------------------------------------------------------ consensus_8753#0 ACATACTATAGAATTCGGTGAACTTATTNGTTAGTTATAAATCNGNNTATATTATCTAAA 900 consensus_8753#1 ------------------------------------------------------------ consensus_8753#0 CTAAATCAATATTGTGTTTGTGTACAAGTAAACTGATAGCTGGGTATTTGTATTATATTC 960 consensus_8753#1 ------------------------------------------------------------ consensus_8753#0 ATCAAATCTTTGNGATAGCTATTCATGTTAATAATGTTTATGTCTGATCTATATACAAAN 1020 consensus_8753#1 ------------------------------------------------------------ consensus_8753#0 GGATTTTATTTGAGTGTTGATACTGCCAGATTTTGCGAATATAGAGGAGT 1070 consensus_8753#1 -------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||