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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8753#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1070 fasta sequence
[GGCCATTAATTCGGCACGCAGATTATCAGTATGTTTTATCGAGCAATATATCGTGTTCTGGCGTATTAGATATAAGTTGGCTAAATGGTAATGTCGCAATCGGTGCATTGGCAAATGGTTCAACAAAACTATGGAACTGTACTGATGATAGTCCCTCTATAATTGAATTAATGGATTTTCCAGTATCTGACCATATTCTACTATCTGTCGATACGTGTTCTGATAGGTCAGGTTAAAATAGTAATAATAACTACTGTGAATCTGAAAATCCTTGCAGATTTGTTTTCAGTGATTCAGGTGGGAATATTAGTGTGTGGAAGATCGACGCATCATCCTGTTCAAGTCCTCAATCAATTAATAAGTGGCCTGGGCACGAATTTGAAGCTTGGTGTGCATGCTTAAATAAGTGGAACAGTGAAATAGTCTTCACAGGTAGTGATGATTCAAAATGTTGTGTTTGGGATCTACGTAAAGAATGTAAAAAGCCGTTGAATATCATCAGACATAGTGTGGGTGTTTGCAGCATTCAAAATTATCCTGACGTAGATTATTCTATTTCTACCGGAAGAAATGTCAGTTCGATGGTGGAGTTTGGCGTCATAAATGGGGTCCACAAAATTATGTTATAGTCAGTGCAATACATGATGGTTTTGCTGTTGCACACTTACCATTACGTTCACCGTTTAATCACAAAGCAGAAGATAAAGAGGATTCTGTATATAAATTTCGTTTGACTAATGAACAATTAGCCTATGGTATTGACTGGTCATTCAATCATAAAATTAATCAGTTGAAAAGTGATTNTATGAAATCGACTGTAGTTTCTTGTTCATTNNTATGAC-ATACTATAGAATTCGGTGAACTTATTNGTT-AGTTATAAATCNG-NNTATATTATCTAAACTAAATC-AATATTGTGTTTGTGTAC-AAGTAAACTGATAGCTGGGTATTTGTA-TTATA-TTCATCAAA-TCTTTGNG-ATAGCTA-TTCATGTTAA-TAA-TG-TTTATG-TCTGATC-TA-TATA-CAAANGG-ATTTT-ATTTG--AGTGTTG-AT-ACTG-CCAGATTT--TGCGAATATAGAGGAGT]
[+] EMBL CD081790 [GGCCATTAATTCGGCACGCAGATTATCAGTATGTTTTATCGAGCAATATATCGTGTTCTGGCGTATTAGATATAAGTTGGCTAAATGGTAATGTCGCAATCGGTGCATTGGCAAATGGTTCAACAAAACTATGGAACTGTACTGATGATAGTCCCTCTATAATTGAATTAATGGATTTTCCAGTATCTGACCATATTCTACTATCTGTCGATACGTGTTCTGATAGGTCAGGTTAAAATAGTAATAATAACTACTGTGAATCTGAAAATCCTTGCAGATTTGTTTTCAGTGATTCAGGTGGGAATATTAGTGTGTGGAAGATCGACGCATCATCCTGTTCAAGTCCTCAATCAATTAATAAGTGGCCTGGGCACGAATTTGAAGCTTGGTGTGCATGCTTAAATAAGTGGAACAGTGAAATAGTCTTCACAGGTAGTGATGATTCAAAATGTTGTGTTTGGGATCTACGTAAAGAATGTAAAAAGCCGTTGAATATCATCAGACATAGTGTGGGTGTTTGCAGCATTCAAAATTATCCTGACGTAGATTATTCTATTTCTACCGGAAGAAATGTCAGTTCGATGGTGGAGTTTGGCGTCATAAATGGGGTCCACAAAATTATGTTATAGTCAGTGCAATACATGATGGTTTTGCTGTTGCACACTTACCATTACGTTCACCGTTTAATCACAAAGCAGAAGATAAAGAGGATTCTGTATATAAATTTCGTTTGACTAATGAACAATTAGCCTATGGTATTGACTGGTCATTCAATCATAAAATTAATCAGTTGAAAAGTGATTNTATGAAATCGACTGTAGTTTCTTGTTCATTNNTATGAC ATACTATAGAATTCGGTGAACTTATTNGTT AGTTATAAATCNG NNTATATTATCTAAACTAAATC AATATTGTGTTTGTGTAC AAGTAAACTGATAGCTGGGTATTTGTA TTATA TTCATCAAA TCTTTGNG ATAGCTA TTCATGTTAA TAA TG TTTATG TCTGATC TA TATA CAAANGG ATTTT ATTTG AGTGTTG AT ACTG CCAGATTT TGCGAATATAGAG ]
[-] EMBL CD065719 [ TGATGATAGTCCCTCTATAATTGAATTAATGGATTTTCCAGTATCTGACCATATTCTACTATCTGTCGATACGTGTTCTGATAGGTCAGGTTAAAATAGTAATAATAACTACTGTGAATCTGAAAATCCTTGCAGATTTGTTTTCAGTGATTCAGGTGGGAATATTAGAGTGTGGAAGATCGACGCATCATCCTGTTCAAGTCCTCAATCAATTAATAAGTGGCCTGGGCACGAATTTGAAGCTTGGTGTGCATGCTTAAATAAGTGGAACAGTGAAATAGTCTTCACAGGTAGTGATGATTC AAATGTTGTGTTTGGGATCTACGTAAAGAATGTAAAAAGCCGTgata ]
[-] EMBL CD065690 [ TGATGATAGTCCCTCTATAATTGAATTAATGGATTTTCCAGTATCTGACCATATTCTACTATCTGTCGATACGTGTTCTGATAGGTCAGGTTAAAATAGTAATAATAACTACTGTGAATCTGAAAATCCTTGCAGATTTGTTTTCAGTGATTCAGGTGGGAATATTAGTGTGTGGAAGATCGACGCATCATCCTGTTCAAGTCCTCAATCAATTAATAAGTGGCCTGGGCACGAATTTGAAGCTTGGTGTGCATGCTTAAATAAGTGGAACAGTGAAATAGTCTTCACAGGTAGTGATGATTCAAAATGTTGTGTTT GGATCTACGTAAAGAATGTAAAAAGCCt ]
[+] EMBL CD065697 [ CTATAATTGAATTAA GGA TTTCCAGTATCTGACCATATTCTACTATCTGTCGATACGTGTTCTGATAGGTCAGGTTAAAATAGTAATAATAACTACTGTGAATCTGAAAATCCTTGCAGATTTGTTTTCAGTGATTCAGGTGGGAATATTAGTGTGTGGAAGATCGACGCATCATCCTGTTCAAGTCCTCAATCAATTAATAAGTGGCCTGGGCACGAATTTGAAGCTTGGTGTGCATGCTTAAATAAGTGGAACAGTGAAATAGTCTTCACAGGTAGTGATGATTCAAAATGTTGTGTTTGGGATCTACGTAAAGAATGTAAAAAGCCGTTGAATA ]
[-] EMBL CD075521 [ TAAGTGGAACAGTGAAATAGTCTTCACAGGTAGTGATGATTCAAAATGTTGTGTTTGGGATCTACGTAAAGAATGTAAAAAGCCGTTGAATATCATCAGACATAGTGTGGGTGTTTGCAGCATTCAAAATTATCCTGACGTAGATTATTCTATTTCTACCGGAAAAAATGTCAGTTCGATGGTGGAGTTTGGCGTCATAAATGGGGTCCCCAAAATTATGTTATAGTCAGTGCAATACATGATGGTTTTGCTGTTGCACACTTACCATTACGTTCCCCGTTTAATCCCAAAGCAGAAGATAAAGAGGATTCTGTATATAAATTTCGTTTGACTAATGAACAATTAGCCTATGGTATTGACTGGTCATTCAATCATAAAATTAATCAGTTGAAAAGTGATTTTATGAAATCGACTGTAGTTTCTTGTTCATT TTATGACAATACTATAGAATTCGGTGAACTTATT GTTAAGTTATAAATCGGTAATAT TTATTTAAACTAAATCAAATATTGTGTTTGTGTACAAAGTAAACTGATAGCTGGGTATTTGTATTTATATTTCATCAAATTCTTTGTGTATAGCTATTTCATGTTAATTAATTGTTTTATGTTCTGATCTTATTATACCAAAAGGTATTTTAATTTGAAAGTGTTGAATGACTGTCCAGATTTTATGCGAA ATAGAAGAGT]
[-] EMBL CD091810 [ TGATGGTTTTGCTGTTGCACACTTACCATTACGTTCACCGTTTAATCACAAAGCAGAAGATAAAGAGGATTCTGTATATAAATTTCGTTTGACTAATGAACAATTAGC ]
consensusID : consensus_8753#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 276 fasta sequence
[GAACTGTACTGATGATAGTCCCTCTATAATTGAATTAATGGATTTTCCAGTATCTGACCATATTCTACTATCTGTCGATACGTGTTCTGATAGATTTGTTTTCAGTGATTCAGGTGGGAATATTAGTGTGTGGAAGATCGACGCATCATCCTGTTCAAGTCCTCAATCAATTAATAAGTGGCCTGGGCACGAATTTGAGGCTTGGTGTGCATGCTTAAATAAGTGGAACAGTGAAATAGTCTTCACAGGTAGTGATGATTCAAAATGTTGTGTTTG]
[+] EMBL CD128369 [GAACTGTACTGATGATAGTCCCTCTATAATTGAATTAATGGATTTTCCAGTATCTGACCATATTCTACTATCTGTCGATACGTGTTCTGATAGATTTGTTTTCAGTGATTCAGGTGGGAATATTAGTGTGTGGAAGATCGACGCATCATCCTGTTCAAGTCCTCAATCAATTAATAAGTGGCCTGGGCACGAATTTGAGGCTTGGTGTGCATGCTTAAATAAGTGGAACAGTGAAATAGTCTTCACAGGTAGTGATGATTCAAAATGTTGTGTTTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8753#0 GGCCATTAATTCGGCACGCAGATTATCAGTATGTTTTATCGAGCAATATATCGTGTTCTG 60
consensus_8753#1 ------------------------------------------------------------
consensus_8753#0 GCGTATTAGATATAAGTTGGCTAAATGGTAATGTCGCAATCGGTGCATTGGCAAATGGTT 120
consensus_8753#1 ------------------------------------------------------------
consensus_8753#0 CAACAAAACTATGGAACTGTACTGATGATAGTCCCTCTATAATTGAATTAATGGATTTTC 180
consensus_8753#1 -------------GAACTGTACTGATGATAGTCCCTCTATAATTGAATTAATGGATTTTC 47
***********************************************
consensus_8753#0 CAGTATCTGACCATATTCTACTATCTGTCGATACGTGTTCTGATAGGTCAGGTTAAAATA 240
consensus_8753#1 CAGTATCTGACCATATTCTACTATCTGTCGATACGTGTTCTGATAG-------------- 93
**********************************************
consensus_8753#0 GTAATAATAACTACTGTGAATCTGAAAATCCTTGCAGATTTGTTTTCAGTGATTCAGGTG 300
consensus_8753#1 -------------------------------------ATTTGTTTTCAGTGATTCAGGTG 116
***********************
consensus_8753#0 GGAATATTAGTGTGTGGAAGATCGACGCATCATCCTGTTCAAGTCCTCAATCAATTAATA 360
consensus_8753#1 GGAATATTAGTGTGTGGAAGATCGACGCATCATCCTGTTCAAGTCCTCAATCAATTAATA 176
************************************************************
consensus_8753#0 AGTGGCCTGGGCACGAATTTGAAGCTTGGTGTGCATGCTTAAATAAGTGGAACAGTGAAA 420
consensus_8753#1 AGTGGCCTGGGCACGAATTTGAGGCTTGGTGTGCATGCTTAAATAAGTGGAACAGTGAAA 236
********************** *************************************
consensus_8753#0 TAGTCTTCACAGGTAGTGATGATTCAAAATGTTGTGTTTGGGATCTACGTAAAGAATGTA 480
consensus_8753#1 TAGTCTTCACAGGTAGTGATGATTCAAAATGTTGTGTTTG-------------------- 276
****************************************
consensus_8753#0 AAAAGCCGTTGAATATCATCAGACATAGTGTGGGTGTTTGCAGCATTCAAAATTATCCTG 540
consensus_8753#1 ------------------------------------------------------------
consensus_8753#0 ACGTAGATTATTCTATTTCTACCGGAAGAAATGTCAGTTCGATGGTGGAGTTTGGCGTCA 600
consensus_8753#1 ------------------------------------------------------------
consensus_8753#0 TAAATGGGGTCCACAAAATTATGTTATAGTCAGTGCAATACATGATGGTTTTGCTGTTGC 660
consensus_8753#1 ------------------------------------------------------------
consensus_8753#0 ACACTTACCATTACGTTCACCGTTTAATCACAAAGCAGAAGATAAAGAGGATTCTGTATA 720
consensus_8753#1 ------------------------------------------------------------
consensus_8753#0 TAAATTTCGTTTGACTAATGAACAATTAGCCTATGGTATTGACTGGTCATTCAATCATAA 780
consensus_8753#1 ------------------------------------------------------------
consensus_8753#0 AATTAATCAGTTGAAAAGTGATTNTATGAAATCGACTGTAGTTTCTTGTTCATTNNTATG 840
consensus_8753#1 ------------------------------------------------------------
consensus_8753#0 ACATACTATAGAATTCGGTGAACTTATTNGTTAGTTATAAATCNGNNTATATTATCTAAA 900
consensus_8753#1 ------------------------------------------------------------
consensus_8753#0 CTAAATCAATATTGTGTTTGTGTACAAGTAAACTGATAGCTGGGTATTTGTATTATATTC 960
consensus_8753#1 ------------------------------------------------------------
consensus_8753#0 ATCAAATCTTTGNGATAGCTATTCATGTTAATAATGTTTATGTCTGATCTATATACAAAN 1020
consensus_8753#1 ------------------------------------------------------------
consensus_8753#0 GGATTTTATTTGAGTGTTGATACTGCCAGATTTTGCGAATATAGAGGAGT 1070
consensus_8753#1 --------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||