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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8754#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 923 fasta sequence
[CCTCGAGGACAGATCGGCACGAGGAGTTACGTGCCTGCAGTTAGTTGTATCATGGAATCAGCTGAGACAAAGCCAAAGAAATTAAACAAACCAAAAGACACACCTTTTCACCAGCAACGTCTCAAGTCATGGAGACCGATTCTAACTGCTAGAAATGCGTTTCCAATATTTCTCACTATTGGGTTATTATCTATACCAGTGGGTATAGTTTTACTTACTTTCTCTAATAGCGTCTCAGAAGTTGTTGTGGAGTATACTCACTGCGAAGATACCGTACGCCATACACGATGTTCTGAGTTGGTCAGACTTCCTGAGTTCTATAGAACATATAATATATGTTCATGCAAAGTCGAATTTGAACTTAAGGAAGAATTCAAGGGTCAAGTGTACTTTTACTATGGCCTGTCAAATTTCTTCCAAAACCATCGCCGCTATGTCATATCAAAGGATGATTACCAGTTACATGGTTCAGTAGAAACTCCAAAAGCAAGTTGTGAACCGTATCGATTTGATCCGAGTGGAAAAGTCTACGCCCCCTGTGGAGCTATTGCAATGAGCTTATTCAATGACTCGTTTACTCTAACATATCTTGGTAAAAGCTCCGAACCCCTTGCTAAACCATTACAAGTTCCAATGACCAATAAGGGAATCGCTTGGCGTACTGATGTTGAAGAAAAATTTGGTAAACCACCAGCTGATTCATGGGCAAACACAGTAAAACCACTTAGTTGGAAAAAGTCAGCTCTTGAACGCTCATCTGGTGCATATAGCGAAGATGAAGAGTTATTAGTATGGATGCGTGTTTCAGCACTACCAACATTTCGTAAATTATATCGTCTAATCACTCATGTCAACGCTTTTTCAAACGGTCTGCCAGCTGGAATTTATAGTGTTAATATTGAGTACTGTGAGTACTGATTTAC]
[+] EMBL CD084131 [CCTCGAGGACAGATCGGCACGAGGAGTTACGTGCCTGCAGTTAGTTGTATCATGGAATCAGCTGAGACAAAGCCAAAGAAATTAAACAAACCAAAAGACACACCTTTTCACCAGCAACGTCTCAAGTCATGGAGACCGATTCTAACTGCTAGAAATGCGTTTCCAATATTTCTCACTATTGGGTTATTATCTATACCAGTGGGTATAGTTTTACTTACTTTCTCTAATAGCGTCTCAGAAGTTGTTGTGGAGTATACTCACTGCGAAGATACCGTACGCCATACACGATGTTCTGAGTTGGTCAGACTTCCTGAGTTCTATAGAACATATAATATATGTTCATGCAAAGTCGAATTTGAACTTAAGGAAGAATTCAAGGGTCAAGTGTACTTTTACTATGGCCTGTCAAATTTCTTCCAAAACCATCGCCGCTATGTCATATCAAAGGATGATTACCAGTT ]
[-] EMBL CD138126 [ AAATTAAACAAACCAAAAGACACACCTTTTCACCAGCAACGTCTCAAGTCATGGAGACCGATTCTAACTGCTAGAAATGCGTTTCCAATATTTCTCACTATTGGGTTATTATCTATACCAGTGGGTATAGTTTTACTTACTTTCTCTAATAGCGTCTCAGAAGTTGTTGTGGAGTATACTCACTGCGAAGATACCGTACGCCATACACGATGTTCTGAGTTGGTCAGACTTCCTGAGTTCTATAGAACATATAATATATGTTCATGCAAAGTCGAATTTGAACTTAAGGAAGAATTCAAGGGTCAAGTGTATTTTTACTATGGCCCGTCAAATTTCTTCCAAAACCATCGCCGCTATGTCATATCAAAGGATGATTACCAGTTACATGGTTCAGTAGAAACTCCAAAAGCAAGTTGTGAACCGTATCGATTTGATCCG ]
[+] EMBL CD063719 [ ACTGCGAAGAT CGTACGCCATACACGATGTTCTGAGTTGGTCAGACTTCCTGAGTTCTATAGAACATAT ATATATGTTCATGCAAAGTCGAATTTGAACTTAAGGAAGAATTCAAGGGTCAAGTGTACTTTTACTATGGCCTGTCAAATTTCTTCCAAAACCATCGCCGCTATGTCATATCAAAGGATGATTACCAGTTACATGGTTCAGTAGAAACTCCAAAAGCAAGTTGTGAACCGTATCGATTTGATCCGAGTGGAAAAGTCTACGCCCCCTGTGGAGCTATTGCAATGAGCTTATTCAATGACTCGTTTACTCTAACATATCTTGGTAAAAGCTCCGAACCCCTTGCTAAACCATTACAAGTTCCAATGACCAATAAGGGAATCGCTTGGCGTACTGATGTTGAAGAAAAATTTGGTAAACCACCAGCTGATTCATGGGCAAACACAGTAAAACCACTTAGTTGG ]
[-] EMBL CD149596 [ AGTGTATTTTTACTATGGCCTGTCAAATTTCTTCCAAAACCATCGCCGCTATGTCATATCAAAGGATGATTACCAGTTACATGGTTCAGTAGAAACTCCAAAAGCAAGTTGTGAACCGTATCGATTTGATCCGAGTGGAAAAGTCTACGCCCCCTGTGGAGCTATTGCAATGAGCTTATTCAATGACTCGTTTACTCTAACATATCTTGGAAAAAGCTCCGAACCCCTTGCTAAACCATTACAAGTTCCAATGACCAATAAGGGAATCGCTTGGCATACTGATGTTGAAGAAAAATTTGGTAAACCACCAGCTGATTCATGGGCAAACACAGTAAAACCACTTAGTTGGAAAAAGTCAGCTCTTGAACGCTCATCTGGTGCATATAGCGAAGATGAAGAGTTATTAGTATGGATGCGTGTTTCAGCACTACCAACATTTCGTAAATTATATCGTCTAATCACTCATGTCAACGCTTTTTCAAACGGTCTGCCAGCTGGAATTTATAGTGTTAATATTGAGTACTGTGAGTACTGATTTAC]
consensusID : consensus_8754#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 691 fasta sequence
[GGGCCTTATTCGGCACGCAGGCCATAAGGGAATCGCTTGGCGTACTGATGTTGAAGAAAAATTTGGTAAACCACCAGCTGATTCATGGGCAAACACAGTAAAACCACTTAGTTGGAAAAAGTCAGCTCTTGAACGCTCATCTGGTGCATATAGCGAAGATGAAGAGTTATTAGTATGGATGCGTGTTTCAGCACTACCAACATTTCGTAAATTATATCGTCTAATCACTCATGTCAACGCTTTTTCAAACGGTCTGCCAGCTGGAATTTATAGTGTTAATATTGAGTACTCTTATCCCGTCACTCAATTTGGTGGCACTAAACGAATTATACTGTCTACTATGAGTTGGGTAGGTGGCCGAAATCCAACATTAGGGATATCCTATATTGTTATGGGCAGTGTGGGTCTTATTTTAGGTCTCATATTTTTCATTCTTCACTTTCATACCATGGAGCATTGATAACCTAGCGCTTGGAAATATTAAACCATTTTCCGGACGAAAACTTGGTAATCATTCCATAAGAAGTGAAGTGCCTTTTAGTGA-ATATTTTGAAAGACCCTTTATGAAGTATTTTTTAATTATAAC-TTTAATTCTTTATGGATTAAGAATATTC-CTCCCTTTAAAAAC-AACATATGAGATTTTAC-TTTAAAAGTGA-ATTTCCCAGAATTTTGG-ATAAAATACCGGGATTGT]
[+] EMBL CD081510 [GGGCCTTATTCGGCACGCAGGCCATAAGGGAATCGCTTGGCGTACTGATGTTGAAGAAAAATTTGGTAAACCACCAGCTGATTCATGGGCAAACACAGTAAAACCACTTAGTTGGAAAAAGTCAGCTCTTGAACGCTCATCTGGTGCATATAGCGAAGATGAAGAGTTATTAGTATGGATGCGTGTTTCAGCACTACCAACATTTCGTAAATTATATCGTCTAATCACTCATGTCAACGCTTTTTCAAACGGTCTGCCAGCTGGAATTTATAGTGTTAATATTGAGTACTCTTATCCCGTCACTCAATTTGGTGGCACTAAACGAATTATACTGTCTACTATGAGTTGGGTAGGTGGCCGAAATCCAACATTAGGGATATCCTATATTGTTATGGGCAGTGTGGGTCTTATTTTAGGTCTCATATTTTTCATTCTTCACTTTCATACCATGGAGCATTGATAACCTAGCGCTTGGAAATATTAAACCATTTTCCGGACGAAAACTTGGTAATCATTCCATAAGAAGTGAAGTGCCTTTTAGTGA ATATTTTGAAAGACCCTTTATGAAGTATTTTTTAATTATAAC TTTAATTCTTTATGGATTAAGAATATTC CTCCCTTTAAAAAC AACATATGAGATTTTAC TTTAAAAGTGA ATTTCCCAGAATTTTGG ATAAAATACCGGGATT ]
[-] EMBL CD075334 [ ATCTGGTGCATATAGCGAAGATGAAGAGTTATTAGTATGGATGCGTGTTTCAGCACTACCAACATTTCGTAAATTATATCGTCTAATCACTCATGTCAACGCTTTTTCAAACGGTCTGCCAGCTGGAATTTATAGTGTTAATATTGAGTACTCTTATCCCGTCACTCAATTTGGTGGCACTAAACGAATTATACTGTCTACTATGAGTTGGTTAGGTGGCCGAAATCCAACATTAGGAATATCCTATATTGTTATGGGCAGTGTGGGTCTTATTTTAGGTCTCATATTTTTCATTCTTCACTTTCATACAATGAAGCATCGATAACCTAGCGCTCGTAAATATCAAACAATTTTCCGTACGAAAACTTGTTAATCATTCCATAAGATGTGAAGTGCCTTTTAGTGATATATTTTGAAGGACCCTTTATGAAGTATTTTTTATTTATAACTTTTATTTCTTTATGAATTAGTAATATTCACT CCTTTAAAAACAAACATATGAGTTTTTACTTTTAAATGTGATATTTCCCAGATTTTTGGTATAATATACTGTTATTGT]
consensusID : consensus_8754#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 414 fasta sequence
[TTTTTTTTTTTTTTTTGAAACATATACAATAACAGTATATTATACCAAAAATCTGGGAAATATCACATTTAAAAGTAAAAACTCATATGTTTGTTTTTAAAGGAGTGAATATTACTAATTCATAAAGAAATAAAAGTTATAAATAAAAAATACTTCATAAAGGGTCCTTCAAAATATATCACTAAAAGGCACTTCACATCTTATGGAATGATTAACAAGTTTTCGTACGGAAAATTGTTTGATATTTACGAGCGCTAGGTTATCGATGCTTCATTGTATGAAAGTGAAGAATGAAAAATATGAGACCTAAAATAAGACCCACACTGCCCATAACAATATAGGATATTCCTAATGTTGGTTTCGCGCAACCTAACAACTCATAGTAGACAGTATAATCCTTTAAGTGCACCAAAT]
[+] EMBL AI395470 [TTTTTTTTTTTTTTTTGAAACATATACAATAACAGTATATTATACCAAAAATCTGGGAAATATCACATTTAAAAGTAAAAACTCATATGTTTGTTTTTAAAGGAGTGAATATTACTAATTCATAAAGAAATAAAAGTTATAAATAAAAAATACTTCATAAAGGGTCCTTCAAAATATATCACTAAAAGGCACTTCACATCTTATGGAATGATTAACAAGTTTTCGTACGGAAAATTGTTTGATATTTACGAGCGCTAGGTTATCGATGCTTCATTGTATGAAAGTGAAGAATGAAAAATATGAGACCTAAAATAAGACCCACACTGCCCATAACAATATAGGATATTCCTAATGTTGGTTTCGCGCAACCTAACAACTCATAGTAGACAGTATAATCCTTTAAGTGCACCAAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8754#0 CCTCGAGGACAGATCGGCACGAGGAGTTACGTGCCTGCAGTTAGTTGTATCATGGAATCA 60
consensus_8754#1 ------------------------------------------------------------
consensus_8754#2 ------------------------------------------------------------
consensus_8754#0 GCTGAGACAAAGCCAAAGAAATTAAACAAACCAAAAGACACACCTTTTCACCAGCAACGT 120
consensus_8754#1 ------------------------------------------------------------
consensus_8754#2 ------------------------------------------------------------
consensus_8754#0 CTCAAGTCATGGAGACCGATTCTAACTGCTAGAAATGCGTTTCCAATATTTCTCACTATT 180
consensus_8754#1 ------------------------------------------------------------
consensus_8754#2 ------------------------------------------------------------
consensus_8754#0 GGGTTATTATCTATACCAGTGGGTATAGTTTTACTTACTTTCTCTAATAGCGTCTCAGAA 240
consensus_8754#1 -GGGCCTTATTCGGCACGCAGGCCATAAGGGAA-TCGCTTGGCGTACTGATGTTGAAGAA 58
consensus_8754#2 ------------------------------------------------------------
consensus_8754#0 GTTGTTGTGGAGTATACTCACTGCGAAGATACCGTACGCCATACACGATGTTCTGAGTTG 300
consensus_8754#1 AAATTTG----GTAAACCACCAGCTGATTCATGGG----CAAACACAGTAAAACCACTTA 110
consensus_8754#2 ------------------------------------------------------------
consensus_8754#0 GTCAGACTTCCTGAGTTCTATAGAACATATAATATATGTTCATGCAAAGTCGAATTTGAA 360
consensus_8754#1 GTTGGAAAAAGTCAGCTCTTGAACGCTCATCTGGTGCATATA-GCGAAGATGAA---GAG 166
consensus_8754#2 ------------------------------------------------------------
consensus_8754#0 CT-TAAGGAAGAATTCAAGGGTCAAGTGTACTTTTACTATGGCCTGTCAAATTTCTTCCA 419
consensus_8754#1 TTATTAGTATGGATGCGTGTTTCA---GCACTACCAACATTTCGTAAATTATATCGTCTA 223
consensus_8754#2 -------------------------------------------TTTTTTTTTTTTTTTTG 17
* * * *
consensus_8754#0 AAACCATCGCCGCTATGTCATATCAAAGGATGATTACCAGTTACATGGTTCAGTAGAAAC 479
consensus_8754#1 ATCAC-TCATGTCAACGCTTTTTCAAACGGT--CTGCCAGCTGGAATTTATAGTGTTAAT 280
consensus_8754#2 AAACATATACAATAACAGTATATTATACCAA--AAATCTGGGAAATATCACATT--TAAA 73
* * * * * * * * * * * **
consensus_8754#0 TCCAAAAGCAAGTTGTGAACCGTATCGATTTGATCCGAGTGGAAAAGTC-TAC-GCCCCC 537
consensus_8754#1 ATTGAGTACTCTTATCCCGTCAC-TCAATTTGGTGGCACTAAACGAATTATACTGTCTAC 339
consensus_8754#2 AGTAAAAACTCATA-TGTTTGTTTTTAAAGGAGTGAATATTACTAATTCATAAAGAA--- 129
* * * * * * * * * ** *
consensus_8754#0 TGTGGAGCTATTGCAATGAGCTTATTCAATGACTCGTTTACTCTAACATATCT-TGGTAA 596
consensus_8754#1 TATGAGTTGGGTAGGTGGCCGAAATCCAACATTAGGGATATCCTA---TATTG-TTATGG 395
consensus_8754#2 -ATAAAAGTTATAAATAAAAAATACTTCATAAAGGGTCCTTCAAAATATATCACTAAAAG 188
* * * * * * *** *
consensus_8754#0 AAGCTCCGAACCCCTTGCTAAACCATTACAAGTTCCAATGACCAATAAGGGAATCGCTTG 656
consensus_8754#1 GCAGTGTGGGTCTTATTTTAGGTC-TCATATTTTTCATTCTTCACTTTC---ATACCATG 451
consensus_8754#2 GCACTTCACATCTTATGGAATGAT-TAACAAGTTTTCGTACGGAA------AATTGTTTG 241
* * * * * * * ** * * ** **
consensus_8754#0 GCGTACTGATGTTGAAGAAAAATTTGGTAAACCACCAGCTGATTCATGGGCAAACACAGT 716
consensus_8754#1 GAGCATTGATA---ACCTAGCGCTTGG-AAATATTAAACCATTTTCCGGACGAAAACTTG 507
consensus_8754#2 A--TATTTACG-------AGCGCTAGGTTATCGATGCTTCATTGTATGAAAGTGAAGAAT 292
* * * * * ** * * * *
consensus_8754#0 AAAACCACTTAGTTGGAAAAAGTCAGCTCTTGAACGCTCATCTGGTGCATATAGCGAAGA 776
consensus_8754#1 GTAATCATTCCATAAGAAGTGAAGTGCCTTTTAGTGAATATTTTG---AAAGACCCTTTA 564
consensus_8754#2 GAAA--AATATGAGACCTAAAATAAGACCCACACTGCCCATAACA---ATATAGGATATT 347
** * * * * * ** * * *
consensus_8754#0 TGAAGAGTTATTAGTATGGATGCGTGTTTCAGCACTACCAACATTTCGTAAATTATATCG 836
consensus_8754#1 TGAAGTATTTTTTAATTATA-----ACTTTAATTCTTTATGGATTAAGAATATTCCTCCC 619
consensus_8754#2 CCTAATGTTGGTTTCGCGCA-----ACCTAACAACTCATAGTAGACAGTATA----ATCC 398
* ** * * * * ** * * * * *
consensus_8754#0 TCTAATCACT-CATGTCAACGCTTTTTCAAACGGTCTGCCAGCTGGAATTTATAGTGTTA 895
consensus_8754#1 TTTAAAAACAACATATGAGATTTTACTTTAAAAGTGAATTTCCCAGAATTT-TGGATAAA 678
consensus_8754#2 TTTAAGTGCACCAAAT-------------------------------------------- 414
* *** * ** *
consensus_8754#0 ATATTGAGTACTGTGAGTACTGATTTAC 923
consensus_8754#1 ATACCGGG-ATTGT-------------- 691
consensus_8754#2 ----------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||