These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8767#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1001 fasta sequence [GAGCCATATTCGGCACGACGTAGCAAACCAACTGAGATGGATATGGATATTCACTTGAAGCCTCTTCATTTTAAGATGATTGAAATAGCAAACTTCAGGGTTGGAGCAATGTCTGTACGGAAGTGTCAGTTATCAACCATTGCAGATTCGGTCCTTATACTGAATTGGGTTGGGTCTTCTTCAGCATCTCAGTACGTTAAAGAATTAAAGGACTCAACATGGTTGAACGCTAACAAAGTCTTTCAGTATTGTCGTGAGAGTCTTCCTGAACATGTTGAATGGTTACGCTCATGGCTTTCTTGTCTGGATGAGTTGTGCATAGTTGTTGGAGAGCATTTTCCATACGGTCTAACATGGAACAAAAATGGTCCCAAACTACCTTTACCAACTGCTGAAATACGTCCAGTTCAGTGTTTACAAGAAGGTCGTACCAATACACATGGAAGAACGTCAAAAAAGGTTTTTCATCCTAAATTATCAGTACAATCACAACCGGATCCAGTTGATGTAACTAAGTTGTTTGCTGAAATAGCAAGTGTTCATAAAAATTTACGTCATGTCAGTGTACCTGATATACTCTGATATGGAGAATTCTAGTGAATATTCCTTGAAAATATTTACAAATCAGTTGGTCCAAGTGTGATGGTTACAGTCACACATCATTTAACTTCGCAGCCTACAAATTTTGCCTTGTTCCAGGGGGGGAAAAGTCTCGTCTTATTGCTGGTCTTCTATTGTGTTTTATATTTACTTGGAAATAACTATACATTTCATATTATTATATCATGCATTTATATTGTTGCTTGTTTGCGCTNTTAATTAGATACACATATTTCTTGTCCGGTTCCTTTTTCTTTCTTT-AAATTATCATTGAAGGAGACAAGANAGGAAAATANNNAG-TTCTAATTATTCCACTTTTATTGATTTCAAGTAATGTATAATTAGTTGGTCTTTATGTTTAGTAAACATTTGCAAAATTATTAAAAACCAATATATATTTT] [+] EMBL CD081648 [GAGCCATATTCGGCACGACGTAGCAAACCAACTGAGATGGATATGGATATTCACTTGAAGCCTCTTCATTTTAAGATGATTGAAATAGCAAACTTCAGGGTTGGAGCAATGTCTGTACGGAAGTGTCAGTTATCAACCATTGCAGATTCGGTCCTTATACTGAATTGGGTTGGGTCTTCTTCAGCATCTCAGTACGTTAAAGAATTAAAGGACTCAACATGGTTGAACGCTAACAAAGTCTTTCAGTATTGTCGTGAGAGTCTTCCTGAACATGTTGAATGGTTACGCTCATGGCTTTCTTGTCTGGATGAGTTGTGCATAGTTGTTGGAGAGCATTTTCCATACGGTCTAACATGGAACAAAAATGGTCCCAAACTACCTTTACCAACTGCTGAAATACGTCCAGTTCAGTGTTTACAAGAAGGTCGTACCAATACACATGGAAGAACGTCAAAAAAGGTTTTTCATCCTAAATTATCAGTACAATCACAACCGGATCCAGTTGATGTAACTAAGTTGTTTGCTGAAATAGCAAGTGTTCATAAAAATTTACGTCATGTCAGTGTACCTGATATACTCTGATATGGAGAATTCTAGTGAATATTCCTTGAAAATATTTACAAATCAGTTGGTCCAAGTGTGATGGTTACAGTCACACATCATTTAACTTCGCAGCCTACAAATTTTGCCTTGTTCCAGGGGGGGAAAAGTCTCGTCTTATTGCTGGTCTTCTATTGTGTTTTATATTTACTTGGAAATAACTATACATTTCATATTATTATATCATGCATTTATATTGTTGCTTGTTTGCGCTNTTAATTAGATACACATATTTCTTGTCCGGTTCCTTTTTCTTTCTTT AAATTATCATTGAAGGAGACAAGANAGGAAAATANNNAG TT ] [-] EMBL CD098177 [ GGTTGAACGCTAACAAAGTCTTTCAGTATTGTCGTGAGAGTCTTCCTGAACGTGTTGAATGGTTACGCTCATGGCTTTCTTGTCTGGATGAGTTGTGCATAGTTGTTGGAGAGCATTTTCCATACGGTCTAACATGGAACAAAAATGGTCCCAAACTACCTTTACCAACTGCTGAAATACGTCCAGTTCAGTGTTTACAAGAAGGTCGTACCAATACACATGGAAGAACGTCAAAAAAGGTTTTTCATCCTAAATTATCAGTACAATCACAACCGGATCCAGTTGATGTAACTAAGTTGTTTGCTGAAATAGCAAGTGTTCATAAAAATTTACGTCATGTCAGTGTACCTGATATACTCTGATATGGAGAATTCTAGTGAATATTCCTTGAAAATATTTACAAATCAGTTGGTCCAAGTGTGATGGTTACAGTCACACATCATTTAACTTCGCAGCCTACAAATTTT ] [-] EMBL CD072907 [ TAAATTATCAGTACAATCACAACCGGATCCAGTTGATGTAACTAAGTTGTTTGCTGAAATAGCAAGTGTTCATAAAAATTTACGTCATGTCAGTGTACCTGATATACTCTGATATGGAGAATTCTAGTGAATATTCCTTGAAAATATTTACAAATCAGTTGGTCCAAGTGTGATGGTTACAGTCACACATCATTTAACTTCGCAGCCTACAAATTTTGCCTTGTTCCAGGGGGGGAAAAGTCTCGTCTTATTGCTGGTCTTCTATTGTGTTTTATATTTACTTGGAAATAACTATACATTTCATATTATTATATCATGCATTTATATTGTTGCTTGTTTGCGCTTTTAATTAGATACACATATTTCTTGTCCGGTTCCTTTTTCTTTCTTTCAATTTATCATTGAAGGAGACAAGAAAGGAAAATA AAAGTTTCTAATTATTCCACTTTTATTGATTTCAAGTAATGTATAATTAGTTGGTCTTTATGTTTAGTAAACATTTGCAAAATTATTAAAAACCAATATATATTTT] [-] EMBL CD120606 [ TGTACCTGATATACTCTGATATGGAGAATTCTAGTGAATATTCCTTGAAAATATTTACAAATCAGTTGGTCCAAGTGTGATGGTTACAGTCACACATCATT ] [-] EMBL CD120636 [ TACCTGATATGCTGTGATATGGAGAATTCTAGTGAATATTCCTTGAAAATATTTACAAATCAGTTGGTCCAAGTGTGATGGTTACAGTCACACATCATT ] consensusID : consensus_8767#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 613 fasta sequence [ACTTGAAGCCTCTTCATTTTAAGATGATTGAAATAGCAGTACGTTAATTCTCCGTAGTAACTTAAATGAAGTCAAGAACTTCAGGGTTGGAGCAATGTCTGTACGGAAGTGTCAGTTATCAACCATTGCAGATTCGGTCCTTATACTGAATTGGGTTGGGTCTTCTTCAGCATCTCAGTACGTTAAAGAATTAAAGGACTCAACATGGTTGATCGCTAACAAAGTCTTTCAGTATTGTCGTGAGAGTCTTCCTGAACATGTTGAATGGTTACGCTCATGGCTTTCTTGTCTGGATGAGTTGTGCATAGTTGTTGGAGAGCATTTTCCATACGGTCTAACATGGAACAAAAATGGTCCCAAACTACCTTTACCAACTGCTGAAATACGTCCAGTTCAGTGTTTACAAGAAGGTCGTACCAATACACATGGAAGAACGTCAAAAAAGGTTTTTCATCCTAAATTATCAGTACAATCACAACCGGATCCAGTTGATGTAACTAAGTTGTTTGCTGAAATAGCAAGTGTTCATAAAAATTTACGTCATGTCAGTGTACCTGATATACTCTGATATGGAGAATTCTAGTGAATATTCCTTGAAAATATTTTACAATCA] [+] EMBL CD078265 [ACTTGAAGCCTCTTCATTTTAAGATGATTGAAATAGCAGTACGTTAATTCTCCGTAGTAACTTAAATGAAGTCAAGAACTTCAGGGTTGGAGCAATGTCTGTACGGAAGTGTCAGTTATCAACCATTGCAGATTCGGTCCTTATACTGAATTGGGTTGGGTCTTCTTCAGCATCTCAGTACGTTAAAGAATTAAAGGACTCAACATGGTTGATCGCTAACAAAGTCTTTCAGTATTGTCGTGAGAGTCTTCCTGAACATGTTGAATGGTTACGCTCATGGCTTTCTTGTCTGGATGAGTTGTGCATAGTTGTTGGAGAGCATTTTCCATACGGTCTAACATGGAACAAAAATGGTCCCAAACTACCTTTACCAACTGCTGAAATACGTCCAGTTCAGTGTTTACAAGAAGGTCGTACCAATACACATGGAAGAACGTCAAAAAAGGTTTTTCATCCTAAATTATCAGTACAATCACAACCGGATCCAGTTGATGTAACTAAGTTGTTTGCTGAAATAGCAAGTGTTCATAAAAATTTACGTCATGTCAGTGTACCTGATATACTCTGATATGGAGAATTCTAGTGAATATTCCTTGAAAATATTTTACAATCA] consensusID : consensus_8767#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 550 fasta sequence [ACTTGAAGCCTCTTCATTTTAAGATGATTGAAATAGCAGTACGTTAATTCTCCGTAGTAACTTAAATGAAGTCAAGAACTTCAGGGTTGGAGCAATGTCTGTACGGAAGTGTCAGTTATCAACCATTGCAGATTCGGTCCTTATACTGAATTGGGTTGGGTCTTCTTCAGCATCTCAGTACGTTAAAGAATTAAAGGACTCAACATGGTTGATCGCTAACAAAGTCTTTCAGTATTCTCGTGAGAGTCTTCCTGAACATGTTGAATGGTTACGCTCATGGCTTTCTTGTCTGGATGAGTTGTGCATAGTTGTTGGAGAGCATTTTCCATACGGTCTAACATGGAACAAAAATGGTCCCAAACTACGGGNACCCACCGCCCCCCCCCCCCCCCCCCCGGNGTTTACAAGAAGGTCGTACCAATACACATGGAAGAACGTCAAAAAAGGTTTTTCATCCTAAATTATCAGTACAATCACACCNGGNNCCAGTTGATGTAACTAAGTTGTTTGCTGAAATAGCAAGTGTTCATAAAAATTTACGTCATGTCAG] [+] EMBL CD078347 [ACTTGAAGCCTCTTCATTTTAAGATGATTGAAATAGCAGTACGTTAATTCTCCGTAGTAACTTAAATGAAGTCAAGAACTTCAGGGTTGGAGCAATGTCTGTACGGAAGTGTCAGTTATCAACCATTGCAGATTCGGTCCTTATACTGAATTGGGTTGGGTCTTCTTCAGCATCTCAGTACGTTAAAGAATTAAAGGACTCAACATGGTTGATCGCTAACAAAGTCTTTCAGTATTCTCGTGAGAGTCTTCCTGAACATGTTGAATGGTTACGCTCATGGCTTTCTTGTCTGGATGAGTTGTGCATAGTTGTTGGAGAGCATTTTCCATACGGTCTAACATGGAACAAAAATGGTCCCAAACTACGGGNACCCACCGCCCCCCCCCCCCCCCCCCCGGNGTTTACAAGAAGGTCGTACCAATACACATGGAAGAACGTCAAAAAAGGTTTTTCATCCTAAATTATCAGTACAATCACACCNGGNNCCAGTTGATGTAACTAAGTTGTTTGCTGAAATAGCAAGTGTTCATAAAAATTTACGTCATGTCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8767#1 ------------ACTTGAAGCCTCT--TCATTTTAAGATGATTGAAATAGCAGTACGTTA 46 consensus_8767#2 ------------ACTTGAAGCCTCT--TCATTTTAAGATGATTGAAATAGCAGTACGTTA 46 consensus_8767#0 GAGCCATATTCGGCACGACGTAGCAAACCAACTGAGATGGATATGGATATTCACTTGAAG 60 * ** * * ** * * *** *** * consensus_8767#1 ATTCTCCGTAGTAACTTAAATGAAGTCAAGAACTTCAGGGTTGGAGCAATGTCTGTACGG 106 consensus_8767#2 ATTCTCCGTAGTAACTTAAATGAAGTCAAGAACTTCAGGGTTGGAGCAATGTCTGTACGG 106 consensus_8767#0 CCTCTTCATTTTAAGATGATTGAAATAGCAAACTTCAGGGTTGGAGCAATGTCTGTACGG 120 *** * * *** * * **** * ****************************** consensus_8767#1 AAGTGTCAGTTATCAACCATTGCAGATTCGGTCCTTATACTGAATTGGGTTGGGTCTTCT 166 consensus_8767#2 AAGTGTCAGTTATCAACCATTGCAGATTCGGTCCTTATACTGAATTGGGTTGGGTCTTCT 166 consensus_8767#0 AAGTGTCAGTTATCAACCATTGCAGATTCGGTCCTTATACTGAATTGGGTTGGGTCTTCT 180 ************************************************************ consensus_8767#1 TCAGCATCTCAGTACGTTAAAGAATTAAAGGACTCAACATGGTTGATCGCTAACAAAGTC 226 consensus_8767#2 TCAGCATCTCAGTACGTTAAAGAATTAAAGGACTCAACATGGTTGATCGCTAACAAAGTC 226 consensus_8767#0 TCAGCATCTCAGTACGTTAAAGAATTAAAGGACTCAACATGGTTGAACGCTAACAAAGTC 240 ********************************************** ************* consensus_8767#1 TTTCAGTATTGTCGTGAGAGTCTTCCTGAACATGTTGAATGGTTACGCTCATGGCTTTCT 286 consensus_8767#2 TTTCAGTATTCTCGTGAGAGTCTTCCTGAACATGTTGAATGGTTACGCTCATGGCTTTCT 286 consensus_8767#0 TTTCAGTATTGTCGTGAGAGTCTTCCTGAACATGTTGAATGGTTACGCTCATGGCTTTCT 300 ********** ************************************************* consensus_8767#1 TGTCTGGATGAGTTGTGCATAGTTGTTGGAGAGCATTTTCCATACGGTCTAACATGGAAC 346 consensus_8767#2 TGTCTGGATGAGTTGTGCATAGTTGTTGGAGAGCATTTTCCATACGGTCTAACATGGAAC 346 consensus_8767#0 TGTCTGGATGAGTTGTGCATAGTTGTTGGAGAGCATTTTCCATACGGTCTAACATGGAAC 360 ************************************************************ consensus_8767#1 AAAAATGGTCCCAAACTACCTTTACCAACTGCTGAAATACGTCCAGTTC-AGTGTTTACA 405 consensus_8767#2 AAAAATGGTCCCAAACTACGGGNACCCACCGCCCCCCCCCCCCCCCCCCCGGNGTTTACA 406 consensus_8767#0 AAAAATGGTCCCAAACTACCTTTACCAACTGCTGAAATACGTCCAGTTC-AGTGTTTACA 419 ******************* *** ** ** * ** * * ******* consensus_8767#1 AGAAGGTCGTACCAATACACATGGAAGAACGTCAAAAAAGGTTTTTCATCCTAAATTATC 465 consensus_8767#2 AGAAGGTCGTACCAATACACATGGAAGAACGTCAAAAAAGGTTTTTCATCCTAAATTATC 466 consensus_8767#0 AGAAGGTCGTACCAATACACATGGAAGAACGTCAAAAAAGGTTTTTCATCCTAAATTATC 479 ************************************************************ consensus_8767#1 AGTACAATCACAACCGGATCCAGTTGATGTAACTAAGTTGTTTGCTGAAATAGCAAGTGT 525 consensus_8767#2 AGTACAATCACACCNGGNNCCAGTTGATGTAACTAAGTTGTTTGCTGAAATAGCAAGTGT 526 consensus_8767#0 AGTACAATCACAACCGGATCCAGTTGATGTAACTAAGTTGTTTGCTGAAATAGCAAGTGT 539 ************ * ** ***************************************** consensus_8767#1 TCATAAAAATTTACGTCATGTCAGTGTACCTGATATACTCTGATATGGAGAATTCTAGTG 585 consensus_8767#2 TCATAAAAATTTACGTCATGTCAG------------------------------------ 550 consensus_8767#0 TCATAAAAATTTACGTCATGTCAGTGTACCTGATATACTCTGATATGGAGAATTCTAGTG 599 ************************ consensus_8767#1 AATATTCCTTGAAAATATTTTACAATCA-------------------------------- 613 consensus_8767#2 ------------------------------------------------------------ consensus_8767#0 AATATTCCTTGAAAATATTTACAAATCAGTTGGTCCAAGTGTGATGGTTACAGTCACACA 659 consensus_8767#1 ------------------------------------------------------------ consensus_8767#2 ------------------------------------------------------------ consensus_8767#0 TCATTTAACTTCGCAGCCTACAAATTTTGCCTTGTTCCAGGGGGGGAAAAGTCTCGTCTT 719 consensus_8767#1 ------------------------------------------------------------ consensus_8767#2 ------------------------------------------------------------ consensus_8767#0 ATTGCTGGTCTTCTATTGTGTTTTATATTTACTTGGAAATAACTATACATTTCATATTAT 779 consensus_8767#1 ------------------------------------------------------------ consensus_8767#2 ------------------------------------------------------------ consensus_8767#0 TATATCATGCATTTATATTGTTGCTTGTTTGCGCTNTTAATTAGATACACATATTTCTTG 839 consensus_8767#1 ------------------------------------------------------------ consensus_8767#2 ------------------------------------------------------------ consensus_8767#0 TCCGGTTCCTTTTTCTTTCTTTAAATTATCATTGAAGGAGACAAGANAGGAAAATANNNA 899 consensus_8767#1 ------------------------------------------------------------ consensus_8767#2 ------------------------------------------------------------ consensus_8767#0 GTTCTAATTATTCCACTTTTATTGATTTCAAGTAATGTATAATTAGTTGGTCTTTATGTT 959 consensus_8767#1 ------------------------------------------ consensus_8767#2 ------------------------------------------ consensus_8767#0 TAGTAAACATTTGCAAAATTATTAAAAACCAATATATATTTT 1001 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||