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Schistosoma mansoni
cluster # 8768 cluster # 8768       Sequences # 7       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8768#0 length = 864 sequences # 5  
consensus_8768#1 length = 599 sequences # 1  
consensus_8768#2 length = 436 sequences # 1  

consensusID : consensus_8768#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 864
fasta sequence
                              [TCAATTATGTTAATGTTAATGTATATCCTTAGTAACAAGTTGAATATTGTTCCAATCATTGAAAATGAAGATTTAAGTAGTATATAACACTATCTATGAATTAAATGTAGTAAGATGATTTTTCATTGAATAATACTGATTAATACGAGAGATACCATATGATAAATAATCAAATTTCGTCTGTTCTTGAACTGATAATATGACTGCCCAAACACCCCAGAATAAATGAGCCGACAAAGCAAAATGATTCACTTCAATCAACCATTTCTCAAGTAAACTTTCATTTTCCCAATTATTATTATTATTATCATTACAATCTTGATGAATACAGTTGGAATGTGGAGTGATCGTTGTTACTGGAGTCGTGGAATATCCATTCTGAATCATTTCTGTTTGTTGATTAAATTTTTTTTCATAATAATTTTTTGCTTTTAAATATTTACTTATCCACATAAGTTGATATTCTTTTGTTGGATAGTTATCAAAATTGACAACATTTATACCAGCAAATTCACAAAAATGATTTCCAATATCAAATGCTGCATGATTAAATCCACAATATTCAAAATCAATAAAATGGACTGTTTTTTCATCCTGAGGCATAACAATATTTCCAGCTAATAAGTCATTATGACATAGGACAACTGGGGAAATTGGATTTTTAAGTAATTTCTCTAAATATGCCACTTCATTCAAGAGGACTGCTTTTGAAGGGAATTCATTTTTAAGTCTTTCAAATTTTAGTTTGTCGTCATTATAACCAGTTGGTAATTTTTCAATCCATTTTCGTATTGTTGGAAATAGTACAGGTTTTGTATAAAGTTTTGATGAATCGTTGACTTCACTAGGGAATAAACGTAGCAT]

[+] EMBL CD074826             [TCAATTATGTTAATGTTAATGTATATCCTTAGTAACAAGTTGAATATTGTTCCAATCATTGAAAATGAAGATTTAAGTAGTATATAACACTATCTATGAATTAAATGTAGTAAGATGATTTTTCATTGAATAATACTGATTAATACGAGAGATACCATATGATAAATAATCAAATTTCGTCTGTTCTTGAACTGATAATATGACTGCCCAAACACCCCAGAATAAATGAGCCGACAAAGCAAAATGATTCACTTCAATCAACCATTTCTCAAGTAAACTTTCATTTTCCCAATTATTATTATTATTATCATTACAATCTTGATGAATACAGTTGGAATGTGGAGTGATCGTTGTTACTGGAGTCGTGGAATATCCATTCTGAATCATTTCTGTTTGTTGATTAAATTTTTTTTCATAATAATTTTTTGCTTTTAAATATTTACTTATCCACATAAGTTGATATTCTTTTGTTGGATAGTTATCAAAATTGACAACATTTATACCAGCAAATTCACAAAAATGATTTCCAATATCAAATGCTGCATGATTAAATCCACAATATTCAAAATCAATAAAATGGACTGTTTTTTCATCCTGAGGCATAACAATATTTCCAGCTAATAAGTCATTATGACATAGGACAACTGGGGAAATTGGATTNTTAAGTAATTTCTCTAAATATGCCAC                                                                                                                                                                                 ]
[-] EMBL CD195633             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TTCTTTTGTTGGATAGTTATCAAAATTGACAACATTTATACCAGCAAATTCACAAAAATGATTTCCAATATCAAATGCTGCATGATTAAATCCACAATATTCAAAATCAATAAAATGGACTGTTTTTTCATCCTGAGGCATAACAATATTTCCAGCTAATAAGTCATTATGACATAGGACAACTGGGGAAATTGGATTTTTAAGTAATTTCTCTAAATATGCCACTTCATTCAAGAGGACTGCTTTTGAAG                                                                                                                                                       ]
[-] EMBL CD096146             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     AAATGATTTCCAATATCAAATGCTGCATGATTAAATCCACAATATTCAAAATCAATAAAATGGACTGTTTTTTCATCCTGAGGCATAACAATATTTCCAGCTAATAAGTCATTATGACATAGGACAACTGGGGAAATTGGATTTTTAAGTAATTTCTCTAAATATGCCACTTCATTCAAGAGGACTGCTTTTGAAGGGAATTCATTTTTAAGTCTTTCAAATTTTAGTTTGTCGTCATTATAACCAGTTGGTAATTTTTCAATCCATTTTCGTATTGTTGGAAATAGTACAGGTTTTGTATAAAGTTTTGATGAATCGTTGACTTCACTAGGGAATAAACGTAGCAT]
[-] EMBL CD096155             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     AAATGATTTCCAATATCAAATGCTGCATGATTAAATCCACAATATTCAAAATCAATAAAATGGACTGTTTTTTCATCCTGAGGCATAACAATATTTCCAGCTAATAAGTCATTATGACATAGGACAACTGGGGAAATTGGATTTTTAAGTAATTTCTCTAAATATGCCACTTCATTCAAGAGGACTGCTTTTGAAGGGAATTCATTTTTAAGTCTTTCAAATTTTAGTTTGTCGTCATTATAACCAGTTGGTAATTTTTCAATCCATTTTCGTATTGTTGGAAATAGTACAGGTTTTGTATAAAGTTTTGATGAATCGTTGACTTCACTAGGGAATAAACGTAGCAT]
[-] EMBL CD096144             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     AAATGATTTCCAATATCAAATGCTGCATGATTAAATCCACAATATTCAAAATCAATAAAATGGACTGTTTTTTCATCCTGAGGCATAACAATATTTCCAGCTAATAAGTCATTATGACATAGGACAACTGGGGAAATTGGATTTTTAAGTAATTTCTCTAAATATGCCACTTCATTCAAGAGGACTGCTTTTGAAGGGAATTCATTTTTAAGTCTTTCAAATTTTAGTTTGTCGTCATTATAACCAGTTGGTAATTTTTCAATCCATTTTCGTATTGTTGGAAATAGTACAGGTTTTGTATAAAGTTTTGATGAATCGTTGACTTCACTAGGGAATAAACGTAGCAT]


>consensus_8768#0 TCAATTATGTTAATGTTAATGTATATCCTTAGTAACAAGTTGAATATTGTTCCAATCATT GAAAATGAAGATTTAAGTAGTATATAACACTATCTATGAATTAAATGTAGTAAGATGATT TTTCATTGAATAATACTGATTAATACGAGAGATACCATATGATAAATAATCAAATTTCGT CTGTTCTTGAACTGATAATATGACTGCCCAAACACCCCAGAATAAATGAGCCGACAAAGC AAAATGATTCACTTCAATCAACCATTTCTCAAGTAAACTTTCATTTTCCCAATTATTATT ATTATTATCATTACAATCTTGATGAATACAGTTGGAATGTGGAGTGATCGTTGTTACTGG AGTCGTGGAATATCCATTCTGAATCATTTCTGTTTGTTGATTAAATTTTTTTTCATAATA ATTTTTTGCTTTTAAATATTTACTTATCCACATAAGTTGATATTCTTTTGTTGGATAGTT ATCAAAATTGACAACATTTATACCAGCAAATTCACAAAAATGATTTCCAATATCAAATGC TGCATGATTAAATCCACAATATTCAAAATCAATAAAATGGACTGTTTTTTCATCCTGAGG CATAACAATATTTCCAGCTAATAAGTCATTATGACATAGGACAACTGGGGAAATTGGATT TTTAAGTAATTTCTCTAAATATGCCACTTCATTCAAGAGGACTGCTTTTGAAGGGAATTC ATTTTTAAGTCTTTCAAATTTTAGTTTGTCGTCATTATAACCAGTTGGTAATTTTTCAAT CCATTTTCGTATTGTTGGAAATAGTACAGGTTTTGTATAAAGTTTTGATGAATCGTTGAC TTCACTAGGGAATAAACGTAGCAT



consensusID : consensus_8768#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 599
fasta sequence
                              [TTNNTAAGTAATTTCTCTAAATATGCCACTTCATTCAAGAGGACTGCTTTTGAAGGGAATTCATTTTTAAGTCTTTCAAATTTTAGTTTGTCGTTATTATAACCAGTTGGTNNNNNNNNNNNNNNNNNTCGTATTGTTGGAAATAGTACAGGTTTTGTATAAAGTTTTGATGAATCGTTGACTTCACTAGGGAATAAACGTAGCATAGTTTCACGAGTTGGTAAACTATGCAATCTAGCCACTTGTTCAATTATTAATTCACTATACTTTGACATTGCCATTAATAAATGAATAAACTAAACCATTTTGAAAAACTGCATATAATTTTTGTTCACCACCAAGTTCATGTAGTAGATACATATGTTTGATTTCATCCCACCGGTTAACAATAAAATCTGCTAATTNNNNNNNNNNNNNNNNNNNNNNNNNTTTAGGTTCATCTATTTTATTATCATGATCTAAACGAATAACAATATTAGATAAACCTTCTTCTAATGGTTTCACTTTTATATACTCTTTTGACCAAGTAGGAAAATTGATTTTATAATTTTCCAAAAATACGGATATCAATGACTGGAATAGTATTTGGTATAAAAGGC]

[-] EMBL CD081000             [TTNNTAAGTAATTTCTCTAAATATGCCACTTCATTCAAGAGGACTGCTTTTGAAGGGAATTCATTTTTAAGTCTTTCAAATTTTAGTTTGTCGTTATTATAACCAGTTGGTNNNNNNNNNNNNNNNNNTCGTATTGTTGGAAATAGTACAGGTTTTGTATAAAGTTTTGATGAATCGTTGACTTCACTAGGGAATAAACGTAGCATAGTTTCACGAGTTGGTAAACTATGCAATCTAGCCACTTGTTCAATTATTAATTCACTATACTTTGACATTGCCATTAATAAATGAATAAACTAAACCATTTTGAAAAACTGCATATAATTTTTGTTCACCACCAAGTTCATGTAGTAGATACATATGTTTGATTTCATCCCACCGGTTAACAATAAAATCTGCTAATTNNNNNNNNNNNNNNNNNNNNNNNNNTTTAGGTTCATCTATTTTATTATCATGATCTAAACGAATAACAATATTAGATAAACCTTCTTCTAATGGTTTCACTTTTATATACTCTTTTGACCAAGTAGGAAAATTGATTTTATAATTTTCCAAAAATACGGATATCAATGACTGGAATAGTATTTGGTATAAAAGGC]


>consensus_8768#1 TTNNTAAGTAATTTCTCTAAATATGCCACTTCATTCAAGAGGACTGCTTTTGAAGGGAAT TCATTTTTAAGTCTTTCAAATTTTAGTTTGTCGTTATTATAACCAGTTGGTNNNNNNNNN NNNNNNNNTCGTATTGTTGGAAATAGTACAGGTTTTGTATAAAGTTTTGATGAATCGTTG ACTTCACTAGGGAATAAACGTAGCATAGTTTCACGAGTTGGTAAACTATGCAATCTAGCC ACTTGTTCAATTATTAATTCACTATACTTTGACATTGCCATTAATAAATGAATAAACTAA ACCATTTTGAAAAACTGCATATAATTTTTGTTCACCACCAAGTTCATGTAGTAGATACAT ATGTTTGATTTCATCCCACCGGTTAACAATAAAATCTGCTAATTNNNNNNNNNNNNNNNN NNNNNNNNNTTTAGGTTCATCTATTTTATTATCATGATCTAAACGAATAACAATATTAGA TAAACCTTCTTCTAATGGTTTCACTTTTATATACTCTTTTGACCAAGTAGGAAAATTGAT TTTATAATTTTCCAAAAATACGGATATCAATGACTGGAATAGTATTTGGTATAAAAGGC



consensusID : consensus_8768#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 436
fasta sequence
                              [ATTGATATCCGTATTTTGGATGGTAATGATCAAGAAAATATTTGGAAAATTATAAAATCAATTTTTCCTACTTGGTCAAAAGAGTATACAAAAGTGAAACCATTAGAAGAAGGTTTATCTAATATTGTTATTCGTTTAGATCATGATAATAAAATAGATGAACCTAAAACTATTCTTATGAGAATTCGAACAAAATTAGCAGATTTTATTGTTAACCGGTGGGATGAAATCAAACATATGTATCTACTACATGAACTTGGTGGTGAACAAAATTATATGCAGTTTTTCAAAATGGTTTAGTTTATTCATTTATTAATGGATCAACTATAAGTGTGGATAAATTTTCAATGTCAAAGTATAGTGAATTAATAATTGAACAAGTGGCTAGATTGCATAGTTTACCAACTCGTGAAACTATGCTAACTTTATTCCCCTA]

[+] EMBL AI067729             [ATTGATATCCGTATTTTGGATGGTAATGATCAAGAAAATATTTGGAAAATTATAAAATCAATTTTTCCTACTTGGTCAAAAGAGTATACAAAAGTGAAACCATTAGAAGAAGGTTTATCTAATATTGTTATTCGTTTAGATCATGATAATAAAATAGATGAACCTAAAACTATTCTTATGAGAATTCGAACAAAATTAGCAGATTTTATTGTTAACCGGTGGGATGAAATCAAACATATGTATCTACTACATGAACTTGGTGGTGAACAAAATTATATGCAGTTTTTCAAAATGGTTTAGTTTATTCATTTATTAATGGATCAACTATAAGTGTGGATAAATTTTCAATGTCAAAGTATAGTGAATTAATAATTGAACAAGTGGCTAGATTGCATAGTTTACCAACTCGTGAAACTATGCTAACTTTATTCCCCTA]


>consensus_8768#2 ATTGATATCCGTATTTTGGATGGTAATGATCAAGAAAATATTTGGAAAATTATAAAATCA ATTTTTCCTACTTGGTCAAAAGAGTATACAAAAGTGAAACCATTAGAAGAAGGTTTATCT AATATTGTTATTCGTTTAGATCATGATAATAAAATAGATGAACCTAAAACTATTCTTATG AGAATTCGAACAAAATTAGCAGATTTTATTGTTAACCGGTGGGATGAAATCAAACATATG TATCTACTACATGAACTTGGTGGTGAACAAAATTATATGCAGTTTTTCAAAATGGTTTAG TTTATTCATTTATTAATGGATCAACTATAAGTGTGGATAAATTTTCAATGTCAAAGTATA GTGAATTAATAATTGAACAAGTGGCTAGATTGCATAGTTTACCAACTCGTGAAACTATGC TAACTTTATTCCCCTA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8768#0      TCAATTATGTTAATGTTAATGTATATCCTTAGTAACAAGTTGAATATTGTTCCAATCATT 60
consensus_8768#1      -TTNNTAAGT-AATTTCTCTAAATATGCC----ACTTCATTCAAGAGGACTGCTTTTGAA 54
consensus_8768#2      ------------------------------------------------------------
                                                                                  

consensus_8768#0      GAAAATGAAGATTTAAGTAGTATATAACACTATCTATGAATTAAATGTAGTAAGATGATT 120
consensus_8768#1      GGGAATTCATTTTTAAGTCTTTCAAATTTTAGTTTGTCGTT--ATTATAACCAGTTGGTN 112
consensus_8768#2      -----------------------------------------------------ATTGATA 7
                                                                             ** * 

consensus_8768#0      TTTCATTGAATAATACTGATTAATACGAGAGATACCATATGATAAATAATCAAATTTCGT 180
consensus_8768#1      NNNNNNNNNNNNNNNNTCGT-ATTGTTGGAAATAGTACAGGTTTTGTATAAAGTTTTGAT 171
consensus_8768#2      TCCGTATTTTGGATGGTAATGATCA-AGAAAATATTTGGAAAATTATAAAATCAATTTTT 66
                                      *  * *       * ***            **       **  *

consensus_8768#0      CTGTTCTTGAACTGATAATATGACTGCCCAAACACCCCAGAATAAATGAGCCGACAAAGC 240
consensus_8768#1      GAATCGTTGACTTCACTAGGGAATAAACGTAGCATAGTTTCACGAGTTGGTAAACTATGC 231
consensus_8768#2      CC-TACTTGGTCAAAAGAGTATACAAAAGTGAAACCATTAGAAGAA--GGTTTATCTAAT 123
                         *  ***     *  *    *          *       *  *    *   *      

consensus_8768#0      AAAATGATTCACTTCAATCAACCATTTCTCAAGTAAACTTTCATTTTCCCAATTATTATT 300
consensus_8768#1      AATCT-AGCCACTT-GTTCAATTATTAATTCACTATACTTTGACATTGCCATTAATAAAT 289
consensus_8768#2      ATTGTTATTCGTTTAGATCA--TGATAATAAAATAGA---TGAACCTAAAACT-ATTCTT 177
                      *   * *  *  **   ***     *  *  * ** *   * *   *   * * **   *

consensus_8768#0      ATTATTATCATTACAATCTTGATGAATACAGTTGGAATGTGGAGTGATCGTTGTTACTGG 360
consensus_8768#1      GA-ATAAACTAAACCATTTTGAAAAACT------GCATATA-ATTTTTGTTCACCACCAA 341
consensus_8768#2      ATGAGAATTCGAACAAAATTAGCAGATT---------------TTATTGTTAACCGGTGG 222
                         *  *     ** *  **     *                  *  *  *         

consensus_8768#0      AGTCGTGGAATATCCAT-TCTGAATCATTTCTGTTTGTTGATTAAATTTTTTTTCATAAT 419
consensus_8768#1      GTTCATGTAGTAGATACATATGTTTGATTTCATCCCACCGGTTAA---------CAATAA 392
consensus_8768#2      GATGAAATCAAACATATGTATCTACTACATGAACTTGGTGGTGAA---------CAAAAT 273
                        *        *   *  * *     *  *         * * **         **  * 

consensus_8768#0      AATTTTTTGCTTTTAAATATTTACTTATCCACATAAGTTGATATTCTTTTGTTGGATAGT 479
consensus_8768#1      AATCTGCTAATTNNNNNNNNNNNNNNNNNNNNNNNNNTTTAGGTTCATCTATT---TTAT 449
consensus_8768#2      TATATGCAGTTTTTCAAAATGGTTTAGTTTATTCATTT----ATTAATGGATC----AAC 325
                       ** *     **                         *     **  *   *        

consensus_8768#0      TATCAAAATTGACAACATTTATACCAGCAAATTCACAAAAATGATTTCCAATATCAAATG 539
consensus_8768#1      TATCATGATCTAAACGAATAACAATATTAGAT-----AAACCTTCTTCTAATG------G 498
consensus_8768#2      TATAAGTGTGGATAA-ATTTTCAATGTCAAAGT---ATAGTGAATTAATAATTGAACAAG 381
                      *** *   *  * *  * *   *     * *       *      *   ***       *

consensus_8768#0      CTGCATGATTAAATCCACAATATTCAAAATCAATAAAATGGACTGTTTTTTCATCCTGAG 599
consensus_8768#1      TTTCACTTTTATATACTCTTTTGACCAAGT-AGGAAAATTGATTTTATAATTTTCC--AA 555
consensus_8768#2      TGGCTAGATTGCATAGTTTACCAACTCGTGAAACTATGCTAACTTTATTCCCCTA----- 436
                         *    **  **          *      *   *     * * * *     *      

consensus_8768#0      GCATAACAATATTTCCAGCTAATAAGTCATTATGACATAGGACAACTGGGGAAATTGGAT 659
consensus_8768#1      AAATACGGATATCAATGACTGGAATAGTATT-TGGTATAAAAGGC--------------- 599
consensus_8768#2      ------------------------------------------------------------
                                                                                  

consensus_8768#0      TTTTAAGTAATTTCTCTAAATATGCCACTTCATTCAAGAGGACTGCTTTTGAAGGGAATT 719
consensus_8768#1      ------------------------------------------------------------
consensus_8768#2      ------------------------------------------------------------
                                                                                  

consensus_8768#0      CATTTTTAAGTCTTTCAAATTTTAGTTTGTCGTCATTATAACCAGTTGGTAATTTTTCAA 779
consensus_8768#1      ------------------------------------------------------------
consensus_8768#2      ------------------------------------------------------------
                                                                                  

consensus_8768#0      TCCATTTTCGTATTGTTGGAAATAGTACAGGTTTTGTATAAAGTTTTGATGAATCGTTGA 839
consensus_8768#1      ------------------------------------------------------------
consensus_8768#2      ------------------------------------------------------------
                                                                                  

consensus_8768#0      CTTCACTAGGGAATAAACGTAGCAT 864
consensus_8768#1      -------------------------
consensus_8768#2      -------------------------
                                               




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)