These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8784#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 592 fasta sequence [GCGGGGAATTCGATTCATCCATCTGAGATGGAAGGGGGACCGAAATCCACAATAAAGTGTATCCGAATAACAAAATTCATGAGTCCACTCGCTTTGGAGGTACATATACTAAAATTGGAACGATGCAGAGAAGATTATCAGGACTCCTGAGCAAGGGTGGCACGCAAAGTTGTGAAGCGTTCTAAATATTTTGTGGGTTTTCAAATAGTCAGGTCTTAGGAGCGGATGCTACCAAGCCTTGTGTGGATAGGTCGTTCTCCCTAGGAGTTTTATATGCATGTGCTCCTAATCTAAGAAATAAATTCTGTGAACTAGGAGCATTACCAGACAAATCAAGGCCACTCATTGTAACTTTGACGGAAACTCGGTTAGTCCACGACTTCGACATTACTCCAGAATTATCCAGATACCACTCCCTAGGAGTTTTATATGCATTTGCTCCTAATCAAAGAAATAAATTCTGTAAACTAGGAGCATTACCAGACAAATAAAGGCCGCTCATTGTAACTTTGACGGAAATTTGGTTAGTCCACGACTTCGGCATTACTCCAGAATTATCCAGATACCACTACCTAAGAGGTAATAGACACAG] [+] EMBL CD178260 [GCGGGGAATTCGATTCATCCATCTGAGATGGAAGGGGGACCGAAATCCACAATAAAGTGTATCCGAATAACAAAATTCATGAGTCCACTCGCTTTGGAGGTACATATACTAAAATTGGAACGATGCAGAGAAGATTATCAGGACTCCTGAGCAAGGGTGGCACGCAAAGTTGTGAAGCGTTCTAAATATTTTGTGGGTTTTCAAATAGTCAGGTCTTAGGAGCGGATGCTACCAAGCCTTGTGTGGATAGGTCGTTCTCCCTAGGAGTTTTATATGCATGTGCTCCTAATCTAAGAAATAAATTCTGTGAACTAGGAGCATTACCAGACAAATCAAGGCCACTCATTGTAACTTTGACGGAAACTCGGTTAGTCCACGACTTCGACATTACTCCAGAATTATCCAGATACCACTCCCTAGGAGTTTTATATGCATTTGCTCCTAATCAAAGAAATAAATTCTGTAAACTAGGAGCATTACCAGACAAATAAAGGCCGCTCATTGTAACTTTGACGGAAATTTGGTTAGTCCACGACTTCGGCATTACTCCAGAATTATCCAGATACCACTACCTAAGAGGTAATAGACACAG] consensusID : consensus_8784#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 384 fasta sequence [TACTTATTTTAGAGCCCAGTTGTATCAGTACTCGCTTCGGTGGTACATATACTAAAATTGGAACGATGCAGAGAAGATTAACATGGCCCCTGCGCAAGGATGATACGCAAAATCGTGAAACTGAAATGGATACTTAAGACAGTAGGATGCATATGAGCTTCAGAATCTAACCAGGGAAATACCATTTACATTGCAAAAATGATATTTTTCGTCTGTTCAGTGAATTAGATGATCAGAGAAAAGTCTACTCTACGTTACTTAACGTACCAACAGTAACCACTTATGATTGATTAATACCACTTGATACGGATCAGTCGATTAAAAAGGTATGGTGTTAGTTGAGAGCGGCATTTGAGGAAGTAACAGCTTCTATTCTATGGTCAT] [-] EMBL CD156449 [TACTTATTTTAGAGCCCAGTTGTATCAGTACTCGCTTCGGTGGTACATATACTAAAATTGGAACGATGCAGAGAAGATTAACATGGCCCCTGCGCAAGGATGATACGCAAAATCGTGAAACTGAAATGGATACTTAAGACAGTAGGATGCATATGAGCTTCAGAATCTAACCAGGGAAATACCATTTACATTGCGAAAATGATATTTTTCGTCTGTTCAGTGAATTAGATGATCAGAGAAAAGTCTACTCTACGTTACTTAACGTACCAACAGTAACCACTTATGATTGATTAATACCACTTGATACGGATCAGTCGATTAAAAAGGTATGGTGTTAGTTGAGAGCGGCATTTGAGGAAGTAACAGCTTCTATTCTATGGTCAT] [+] EMBL CD155953 [ TTATTTTATAGCCCAGTTGTATCAGTACTCGCTTGGGTGGTGCATATACTAAAATTGGAACGATGCATAGAAGATTAACATGGCCCCTGCGCAAGGATGATACGCAAAATGGTGAAACTGAAATGGATACTTAAGACAGTAGGATGCATATGAGCTTCACAATCTAACCAGGGAAATACCATTTACATTGCAAAAATGATATTTTTCGTCTGTTCAGTGAATTAGATGATCAGAGAAAAGTGTACTCTACGTTACTTAACGTACCAACAGTAACCACTTATGATTGATTAATACCACTTGATACGGATCAGTCGATTAAAAAGGTATGGTGTTAATTGAGAGCGGCATTTGAGGAAGTAACAGCTTCTATTCTATGGTCA ] [+] EMBL CD156208 [ TTATTTTAGGGCCCAGTTGTATCAGTACTCGCTTCGGTGGTACATATACTAAAATCGGAACGATGCAGAGAAGATTAACATGGCCCCTGCGCAAGGATGATACGCAAAATCGTGAAACTGAAATGGATACTTAAGACAGTAGGATGCATATGAGCTTCAGAATCTAACCAGGGAAATACCATTTACATTGCAAAAATGATATTTTTCGTCTGTTCAGTGAATTAGATGATCAGAGAAAAGTCTACTCTACGTTACTTAACGTACCAACAGTAACCACTTATGATTGATTAATACCACTTGATACGGATCAGTCGATTAAAAAGGTATGGTGTTAGTTGAGAGCGGCATTTGAGGAAGTAACAGCTTCTATTCTATGGTCA ] [+] EMBL CD156174 [ TTATTTTAGGGCCCAGTTGTATCAGTACTCGCTTCGGTGGTACATATACTAAAATCGGAACGATGCAGAGAAGATTAACATGGCCCCTGCGCAAGGATGATACGCAAAATCGTGAAACTGAAATGGATACTTAAGACAGTAGGATGCATATGAGCTTCAGAATCTAACCAGGGAAATACCATTTACATTGCAAAAATGATATTTTTCGTCTGTTCAGTGAATTAGATGATCAGAGAAAAGTCTACTCTACGTTACTTAACGTACCAACAGTAACCACTTATGATTGATTAATACCACTTGATACGGATCAGTCGATTAAAAAGGTATGGTGTTAGTTGAGAGCGGCATTTGAGGAAGTAACAGCTTCTATTCTATGGTCA ] [+] EMBL CD155901 [ TTATTTTAGAGCCCAGTTGTATCAGTACTCGCTTCGGCGGTACATATACTAAAATTGGAACGATGCAGAGAAGATTAACATGGCCCCTGCGCAAGGATGATACGCAAAATCGTGAAACTGAAATGGATACTTAAGACAGTAGGATGCATATGAGCTTCAGAATCTAACCAGGGAAATACCATTTACATTGCAAAAATGATATTTTTCGTCTGTTCAGTGAATTAGATGATCAGAGAAAAGTCTACTCTACGTTACTTAACGTACCAACAGTAACCACTTATGATTGATTAATACCACTTGATACGGATCAGTCGATTAAAAAGGTATGGTGTTAGTTGAGAGCGGCATTTGAGGAAGTAACAGCTTCTATTCTATGGTCA ] [+] EMBL CD155899 [ TTATTTTAGAGCCCAGTTGTATCAGTACTCGCTTCGGCGGTACATATACTAAAATTGGAACGATGCAGAGAAGATTAACATGGCCCCTGCGCAAGGATGATACGCAAAATCGTGAAACTGAAATGGATACTTAAGACAGTAGGATGCATATGAGCTTCAGAATCTAACCAGGGAAATACCATTTACATTGCAAAAATGATATTTTTCGTCTGTTCAGTGAATTAGATGATCAGAGAAAAGTCTACTCTACGTTACTTAACGTACCAACAGTAACCACTTATGATTGATTAATACCACTTGATACGGATCAGTCGATTAAAAAGGTATGGTGTTAGTTGAGAGCGGCATTTGAGGAAGTAACAGCTTCTATTCTATGGTCA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8784#0 GCGGGGAATTCGATTCATCCATCTGAGATGGAAGGGGGACCGAAATCCACAATAAAGTGT 60 consensus_8784#1 -------------------------------------------------------TACTT 5 * consensus_8784#0 ATCCGAATAACAAAATTCATGAGTCCACTCGCTTTGGAGGTACATATACTAAAATTGGAA 120 consensus_8784#1 ATTTTAGAGCCCAGTTGTATCAGT--ACTCGCTTCGGTGGTACATATACTAAAATTGGAA 63 ** * * * * ** *** ******** ** ********************** consensus_8784#0 CGATGCAGAGAAGATTATCAGGACTCCTGAGCAAGGGTGGCACGCAAAGTTGTGAAGCGT 180 consensus_8784#1 CGATGCAGAGAAGATTAACATGGCCCCTGCGCAAGGATGATACGCAAAATCGTGAAAC-- 121 ***************** ** * * **** ****** ** ******* * ***** * consensus_8784#0 TCTAAATATTTTGTGGGTTTTCAAATAGTCAGGTCTTAGGAGCGGATGCTACCAAGCCTT 240 consensus_8784#1 --TGAA------ATGGATACTTAAGACAGTAGG----ATGCATATGAGCTTCAGAATCTA 169 * ** *** * * ** *** * * *** * * ** consensus_8784#0 GT-GTGGATAGGTCGTTCTCCCTAGGAGTTTTATATGCATGTGCTCCTAATCTAAGAAAT 299 consensus_8784#1 ACCAGGGAAATACCATTTACATTGCAAAAATGATAT--------TTTTCGTCTGTTCAGT 221 *** * * ** * * * * **** * * *** * * consensus_8784#0 AAATTCTGTGAACTAGGAGCATTACCAGACAAATCAAGGCCACTCATTGTAACTTTGACG 359 consensus_8784#1 GAATTAGATGATCAGAGAAAAGT------CTACTCTACGTTACTTAACGTACCAACAGTA 275 **** *** * ** * * * * ** * * *** * *** * consensus_8784#0 GAAACTCGGTTAGTCCACGACTTCGACATTACTCCAGAATTATCCAGATACCACTCCCTA 419 consensus_8784#1 ACCACTTA--TGATTGATTAATACCACTTGATAC--GGATCAGTCGATTAAAAAGGTATG 331 *** * * * * * * ** * * * * ** * * ** * * consensus_8784#0 GGAGTTTTATATGCATTTGCTCCTAATCAAAGAAATAAATTCTGTAAACTAGGAGCATTA 479 consensus_8784#1 G---TGTTAGTTGAGAGCGGCATTTGAGGAAGTAACAGCTTCTAT--TCTATGGTCAT-- 384 * * *** ** * * *** ** * **** * *** * *** consensus_8784#0 CCAGACAAATAAAGGCCGCTCATTGTAACTTTGACGGAAATTTGGTTAGTCCACGACTTC 539 consensus_8784#1 ------------------------------------------------------------ consensus_8784#0 GGCATTACTCCAGAATTATCCAGATACCACTACCTAAGAGGTAATAGACACAG 592 consensus_8784#1 ----------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||