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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8785#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1331 fasta sequence
[GAAAAGGGGTTGGTTGAACAATATTGCGGTAGGTTGTTATTTCCTGACTTGTCTCAGCAAATTTAAGGACGTGCATTGTCTCCTCGTATTCTTCTGGTGCTTGCTGGCTGCAAACAAGCATCGCAACACGGCCATCGCCCTCAAAAAAGTTCTTAAAAAGATATGTTAACCGAGCATCACGGTAAGGAACAACACGTGGGTGTCCAATAGGAGTAGTTGTGGTTCCCCGACTTTTATTTCCATTCGTTTGAATATCACGCAAGGCTTTGATGCACTTTCGAAGATTCATTAGGGAATTGTTAATGTTGGATGCTTCCTTCAAGCGATTTCCTTGCGTTCCGCTACGGCTTGTACGTTCGGAACCGGCGAGGTCCACA-AGGCATAAATGACTGATAGCAACGGACTCCTTATCTTGGACAGCTTCATCATACTTGGTATCATAGCCCGTCCTCACCAATCGAATAGTAAAAACACAATGACTTCGACTGGACTCAACATTCAATGCCGTCTGTCCTATTCGACGGCGTTTCTGACCTGCACAAAACAAATCGAGAGCCTCGTCGGCCGATTTAACTTCTACTTCCACTCCTCCATAAACATACACATTTCTTTGGGAATCTTCCCTCAATATTCGAGTTGTTAAATTCCTTCCTGGTAAGTCTGAAACGTCTTGAAGTAGGTCATATATGCTGTTGTTATATACTTCAATGAGGGATACAAAGACAGCAAACAAAGACTTCCATGGAATGTTCACAGATATCGATTCACAAGTTCTTTCAACCATATTCACAGATTTAAAGTCAGATTTTGGCAAGCGCGAACGCTGCTGGAAATCAAATCTATGACGGTCCATAAGCGCATCTGCCTCTGATTGGATAATAAACCCGTTGAAACCGTCAGGTTTTACCACATATTTTTTTGTCTGGAACTGTCCAATAGAATTAAAAATAACATCAAGTGAACGTGGTAAAATGCCAGGGTCCTTTGAAGACCCCTCCATAGAGTAGGTCTTGCCACTGCCAGTAACCCCATAAGTGAACAGTAAGCCATTTTTCCCATGCAGAAAGTCAGTGACAACAGGGAACGCAACTNTCTGAAATACAACATCTTGTCATTAATCAGGTGGAAGAACGCAAGTGAATGAGTGAGAAGTTTCTTTCCTATTCCCAGAGCGGTGACCGACAGACTTTATGGTTTTTTCATCACAAACCTCAATACAGGGAATCTCCTGGGAGAGAAACGGTTTGACACGACAGAAAACTTCCACGTTTTGAGTGTGTAAGGGATCGACGTTTTTGGAAATTAAAGAACTACTCATTGGAAAACAAACA]
[+] EMBL CD116198 [GAAAAGGGGTTGGTTGAACAATATTGCGGTAGGTTGTTATTTCCTGACTTGTCTCAGCAAATTTAAGGACGTGCATTGTCTCCTCGTATTCTTCTGGTGCTTGCTGGCTGCAAACAAGCATCGCAACACGGCCATCGCCCTCAAAAAAGTTCTTAAAAAGATATGTTAACCGAGCATCACGGTAAGGAACAACACGTGGGTGTCCAATAGGAGTAGTTGTGGTTCCCCGACTTTTATTTCCATTCGTTTGAATATCACGCAAGGCTTTGATGCACTTTCGAAGATTCATTAGGGAATTGTTAATGTTGGATGCTTCCCTCAAGCGATTTCCTTGCGTTCCGCTACGGCTTGTACGTTNCGAACCGGCGAGGTCCCCACAGGCAT AATGA ]
[-] EMBL CD152868 [ AAGATATGTTACCCGAGCATCACGGTAAGGAACAACACGTGGGTGTCCAATAGGAGTAGTTGTGGTTCCCCGACTTTTATTTCCATTCGTTTGAATATCACGCAAGGCTTTGATGCACTTTCGAAGATTCATTAGGGAATTGTTAATGTTGGATGCTTCCTTCAAGCGATTTCCTTGCGTTCCGCTACGGCTTGTACGTTCGGAACCGGCGAGGTCCACA AGGCATAAATGACTGATAGCAACGGACTCCTTATCTTGGACAGCTTCA ]
[+] EMBL CD115111 [ TTCAAGCGATTTCCTTGCGTTCCGCTACGGCTTGTACGTTCGGAACCGGCGAGGTCCACA AGGCATAAATGACTGATAACAACGGACTCCTTATCTTGGACAGCTTCATCATACTTGGTATCATAGCCCGTCCTCACCAATCGAATAGTAAAAACACAATGACTTCGACTGGACTCAACATTCAATGCCGTCTGTCCTATTCGACGGCGTTTCTGACCTGCACAAAACAAATCGAGAGCCTCGTCGGCCGATTTAACTTCTACTTCCACTCCTCCATAAACATACACATTTCTTTGGGAATCTTCCCTCAATATTCGAGTTGTTAAA ]
[+] EMBL CD095297 [ TCGAGAGCCTCGTCGGCCGATTTAACTTCTACTTCCACTCCTCCATAAACATACACATTTCTTTGGGAATCTTCCCTCAATATTCGAGTTGTTAAATTCCTTCCTGGTAAGTCTGAAACGTCTTGAAGTAGGTCATATATGCTGTTGTTATATACTTCAATGAGGGATACAAAGACAGCAAACAAAGACTTCCATGGAATGTTCACAGATATCGATTCACAAGTTCTTTCAACCATATTCACAGATTTAAAGTCAGATTTTGGCAAGCGCGAACGCTGCTGGAAATCAAATCTATGACGGTCCATAAGCGCATCTGCCTCTGATTGGATAATAAACCCGTTGAAACCGTCAGGTTTTACCACATATTTTTTTGTCTGGAACTGTCCAATAGAATTAAAAATAACATCAAGTGAACGTGGTAAAATGCCAGGGTCCTTTGAAGACCCCTCCATAGAGTAGGTCTTGCCACTGCCAGTAACCCCATAAGTGAACAGTAAGCCATTTTTCCCATGCAGAAAGTCAGTGACAACAGGGAACGCAACTNTCTGAAATACAACATCTTGTCATTA ]
[+] EMBL CD063781 [ GCCAGGGTCCTTTGAAGACCCCTCCATAGAGTAGGTCTTGCCACTGCCAGTAACCCCATAAGTGAACAGTAAGCCATTTTTCCCATGCAGAAAGTCAGTGACAACAGGGAACGCAACTTTCTGAAATACAACATCTTGTCCTGCATCAGGTGGAAGAACGCAAGTGAATGAGTGAGAAGTTTCTTTCCTATTCCCAGAGCGGTGACCGACAGACTTTATGGTTTTTTCATCACAAACCTCAATACAGGGAATCTCCTGGGAGAGAAACGGTTTGACACGACAGAAAACTTCCACGTTTTGAGTGTGTAAGGGATCGACGTTTTTGGAAATTAAAGAACTACTCATTGGAAAACAAACA]
consensusID : consensus_8785#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 511 fasta sequence
[TTGAAGAATCGTCAGAAACACGCACGGGAGTTTGTATTCGTGAACGGCTCTGGCCATAGGGTGTACGAAAAGGGGTTGGTTGAACAATATTGCGGTAGGTTGTTATTTCCTGACTTGTCTCAGCAAATTTAAGGACGTGCATTGTCTCCTCGTATTCTTCTGGTGCTTGCTGGATGCAAACAAGCATCGCAACACGGCCATCGCCCTCAAAAAAGTTCTTAAAAAGATATGTTAACCGAGCATCACGGTAAGGAACAACACGTGGGTGTCCAATAGGAGTAGTTGTGGTTCCCCGACTTTTATTTCCATTCGTTTGAATATCACGCAAGGCTTTGATGCACTTTCGAAGATTCATTAGGGAATTGTTAATGTTGGATGCTTCCTTCAAGCGATTTCCTTGCGTTCCGCTACGGCTTGTACGTTCGGAACCGGCGAGGTCCACAAGGCATAAATGACTGATAACAACGGACTCCTTATCTTGGACAGCTTCATCATACTTGCTCTGTTGTAG]
[-] EMBL CD152907 [TTGAAGAATCGTCAGAAACACGCACGGGAGTTTGTATTCGTGAACGGCTCTGGCCATAGGGTGTACGAAAAGGGGTTGGTTGAACAATATTGCGGTAGGTTGTTATTTCCTGACTTGTCTCAGCAAATTTAAGGACGTGCATTGTCTCCTCGTATTCTTCTGGTGCTTGCTGGATGCAAACAAGCATCGCAACACGGCCATCGCCCTCAAAAAAGTTCTTAAAAAGATATGTTAACCGAGCATCACGGTAAGGAACAACACGTGGGTGTCCAATAGGAGTAGTTGTGGTTCCCCGACTTTTATTTCCATTCGTTTGAATATCACGCAAGGCTTTGATGCACTTTCGAAGATTCATTAGGGAATTGTTAATGTTGGATGCTTCCTTCAAGCGATTTCCTTGCGTTCCGCTACGGCTTGTACGTTCGGAACCGGCGAGGTCCACAAGGCATAAATGACTGATAACAACGGACTCCTTATCTTGGACAGCTTCATCATACTTGCTCTGTTGTAG]
consensusID : consensus_8785#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 420 fasta sequence
[CACATTTCTTTGGGAATCTTCCCTCAATATTCGAGTTGTTAAATTCCTTCCTGGTAAGTCTGAAACGTCTTGAAGTAGGTCATATATGCTGTTGTTATATACTTCAATGAGGGATACAAAGACAGCAAACAAAGACTTCCATGGAATGTTCACAGATATCGATTCACAAGTTCTTTCAACCATATTCACAGATTTAAAGTCAGATTTTGGCAAGCGCGAACGCTGCTGGAAATCAAATCTATGACGGTCCATAAGCGCATCTGCCTCTGATTGGATAATAAACCCGTTGAAACCGTCAGGTTTTACCACATATTTTTTTGTCTGGAACTGTCCAATAGAATTAAAAATAACATCAAGTGAACGTGGTAAAATGCCAGGGTCCTTTGAAGACCCCTCCATAGAGTATGTGTAAAACCCGCC]
[-] EMBL CD124392 [CACATTTCTTTGGGAATCTTCCCTCAATATTCGAGTTGTTAAATTCCTTCCTGGTAAGTCTGAAACGTCTTGAAGTAGGTCATATATGCTGTTGTTATATACTTCAATGAGGGATACAAAGACAGCAAACAAAGACTTCCATGGAATGTTCACAGATATCGATTCACAAGTTCTTTCAACCATATTCACAGATTTAAAGTCAGATTTTGGCAAGCGCGAACGCTGCTGGAAATCAAATCTATGACGGTCCATAAGCGCATCTGCCTCTGATTGGATAATAAACCCGTTGAAACCGTCAGGTTTTACCACATATTTTTTTGTCTGGAACTGTCCAATAGAATTAAAAATAACATCAAGTGAACGTGGTAAAATGCCAGGGTCCTTTGAAGACCCCTCCATAGAGTATGTGTAAAACCCGCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8785#0 GAAAAGGGGTTGGTTGAACAATATTGCGGTAGGTTGTTATTTCCTGACTTGTCTCAGCAA 60
consensus_8785#2 ------------------------------------------------------------
consensus_8785#1 ------------------------------------------------------------
consensus_8785#0 ATTTAAGGACGTGCATTGTCTCCTCGTATTCTTCTGGTGCTTGCTGGCTGCAAACAAGCA 120
consensus_8785#2 ------------------------------------------------------------
consensus_8785#1 ------------------------------------------------------------
consensus_8785#0 TCGCAACACGGCCATCGCCCTCAAAAAAGTTCTTAAAAAGATATGTTAACCGAGCATCAC 180
consensus_8785#2 ------------------------------------------------------------
consensus_8785#1 ------------------------------------------------------------
consensus_8785#0 GGTAAGGAACAACACGTGGGTGTCCAATAGGAGTAGTTGTGGTTCCCCGACTTTTATTTC 240
consensus_8785#2 ------------------------------------------------------------
consensus_8785#1 ------------------------------------------------------------
consensus_8785#0 CATTCGTTTGAATATCACGCAAGGCTTTGATGCACTTTCGAAGATTCATTAGGGAATTGT 300
consensus_8785#2 ------------------------------------------------------------
consensus_8785#1 ------------------------------------------------------------
consensus_8785#0 TAATGTTGGATGCTTCCTTCAAGCGATTTCCTTGCGTTCCGCTACGGCTTGTACGTTCGG 360
consensus_8785#2 ------------------------------------------------------------
consensus_8785#1 ------------------------------------------------------------
consensus_8785#0 AACCGGCGAGGTCCACAAGGCATAAATGACTGATAGCAACGGACTCCTTATCTTGGACAG 420
consensus_8785#2 ------------------------------------------------------------
consensus_8785#1 ------------------------------------------------------------
consensus_8785#0 CTTCATCATACTTGGTATCATAGCCCGTCCTCACCAATCGAATAGTAAAAACACAATGAC 480
consensus_8785#2 ------------------------------------------------------------
consensus_8785#1 ------------------------------------------------------------
consensus_8785#0 TTCGACTGGACTCAACATTCAATGCCGTCTGTCCTATTCGACGGCGTTTCTGACCTGCAC 540
consensus_8785#2 ------------------------------------------------------------
consensus_8785#1 ------------------------------------------------------------
consensus_8785#0 AAAACAAATCGAGAGCCTCGTCGGCCGATTTAACTTCTACTTCCACTCCTCCATAAACAT 600
consensus_8785#2 ------------------------------------------------------------
consensus_8785#1 --TTGAAGAATCGTCAGAAACACGCACGGGAGTTTGTATTCGTGAACGGCTCTGGCCATA 58
consensus_8785#0 ACACATTTCTTTGGGAATCT-TCCCTCAATATTCGAGTTGTTAAATTCCTTCCTGGTAAG 659
consensus_8785#2 -CACATTTCTTTGGGAATCT-TCCCTCAATATTCGAGTTGTTAAATTCCTTCCTGGTAAG 58
consensus_8785#1 GGGTGTACGAAAAGGGGTTGGTTGAACAATATTGCGGTAGGTTG-TTATTTCCTGACTTG 117
* ** * * ******* ** * * ** ****** *
consensus_8785#0 TCTGAAACGTCTTGAAGTAGGTCAT-ATATGCTGTTGTTAT----ATACTTCAATGAGGG 714
consensus_8785#2 TCTGAAACGTCTTGAAGTAGGTCAT-ATATGCTGTTGTTAT----ATACTTCAATGAGGG 113
consensus_8785#1 TCTCAGCAAATTTAAGGACGTGCATTGTCTCCTCGTATTCTTCTGGTGCTTGCTGGATGC 177
*** * ** * * * *** * * ** * ** * * *** ** *
consensus_8785#0 ATACAAAGACAGCAAA-----CAAAGACTTCCATGGAATGTTCACAGATATCGATTCACA 769
consensus_8785#2 ATACAAAGACAGCAAA-----CAAAGACTTCCATGGAATGTTCACAGATATCGATTCACA 168
consensus_8785#1 AAACAAGCATCGCAACACGGCCATCGCCCTCAAAAAAGTTCTTAAAAAGATATGTTAACC 237
* **** * **** ** * * ** * * * * * * * ** ** **
consensus_8785#0 AGTTCTTTCAACCATATTCACAGATTTAAAGTCAGATTTTGGCAAGCGCGAACGCT--GC 827
consensus_8785#2 AGTTCTTTCAACCATATTCACAGATTTAAAGTCAGATTTTGGCAAGCGCGAACGCT--GC 226
consensus_8785#1 GAGCATCACGGTAAGGAACAACACGTGGGTGTCCAATAGGAGTAGTTGTGGTTCCCCGAC 297
* * * ** * *** ** * * * * * *
consensus_8785#0 TGGAAATCAAATCTAT---GACGGTCCATAAGCGC---ATCTGCCTCTGAT--TGGATAA 879
consensus_8785#2 TGGAAATCAAATCTAT---GACGGTCCATAAGCGC---ATCTGCCTCTGAT--TGGATAA 278
consensus_8785#1 TTTTATTTCCATTCGTTTGAATATCACGCAAGGCTTTGATGCACTTTCGAAGATTCATTA 357
* * * ** * * * *** ** * * ** * ** *
consensus_8785#0 TAAACCCGTTGAAACCGTCAGGTTTTACCACAT-ATTTTTTTGTCTGGAACTGT--CCAA 936
consensus_8785#2 TAAACCCGTTGAAACCGTCAGGTTTTACCACAT-ATTTTTTTGTCTGGAACTGT--CCAA 335
consensus_8785#1 GGGAATTGTTAATGTTGGATGCTTCCTTCAAGCGATTTCCTTGCGTTCCGCTACGGCTTG 417
* *** * * * ** ** **** *** * ** *
consensus_8785#0 TAGAATTAAAAATAACATCAAGTGAACGTGGTA-AAATGCCAGGGTCCTTTGAAGACCCC 995
consensus_8785#2 TAGAATTAAAAATAACATCAAGTGAACGTGGTA-AAATGCCAGGGTCCTTTGAAGACCCC 394
consensus_8785#1 TACGTTCGGAACCGGCG--AGGTCCACAAGGCATAAATGACTGATAACAACGGACTCCTT 475
** * ** * * ** ** ** * ***** * * * * * **
consensus_8785#0 TCCATAGAGTAGGT-CTTGCCACTGCCAGTAACCCCATAAGTGAACAGTAAGCCATTTTT 1054
consensus_8785#2 TCCATAGAGTATGT-GTAAAACCCGCC--------------------------------- 420
consensus_8785#1 ATCTTGGACAGCTTCATCATACTTGCTCTGTTGTAG------------------------ 511
* * ** * * **
consensus_8785#0 CCCATGCAGAAAGTCAGTGACAACAGGGAACGCAACTNTCTGAAATACAACATCTTGTCA 1114
consensus_8785#2 ------------------------------------------------------------
consensus_8785#1 ------------------------------------------------------------
consensus_8785#0 TTAATCAGGTGGAAGAACGCAAGTGAATGAGTGAGAAGTTTCTTTCCTATTCCCAGAGCG 1174
consensus_8785#2 ------------------------------------------------------------
consensus_8785#1 ------------------------------------------------------------
consensus_8785#0 GTGACCGACAGACTTTATGGTTTTTTCATCACAAACCTCAATACAGGGAATCTCCTGGGA 1234
consensus_8785#2 ------------------------------------------------------------
consensus_8785#1 ------------------------------------------------------------
consensus_8785#0 GAGAAACGGTTTGACACGACAGAAAACTTCCACGTTTTGAGTGTGTAAGGGATCGACGTT 1294
consensus_8785#2 ------------------------------------------------------------
consensus_8785#1 ------------------------------------------------------------
consensus_8785#0 TTTGGAAATTAAAGAACTACTCATTGGAAAACAAACA 1331
consensus_8785#2 -------------------------------------
consensus_8785#1 -------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||