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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8787#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 695 fasta sequence
[CATGGCNCGTTGTAGATGAATTTGTTGTTGATGTCGTTGCTGGAGGAGATGTTGTTCAGATACTCAAGTTTCTGGATACTGGTCAAGATCGGAAGGCAGGAGAGTCTTCAAAGCACTCTACATTATTATCTTGAAAACTTCTCGCGAGTTAAGCACTCGTTTTTCTGATATTGCTAGAGAGCTTGCCGAGGGATTTCTTGAAGACTCTCGCTTCTCATTATGCCTCAGTACAATGAGGAAGTCTCAGAATGCGGAAATCTTAAAAACATCTCTCCAGCTTTTAGCATCTGTCGTGACAGTCAGTGAAGATTTAGCTCGAGCCGTCTTGCGATATATTGATTTTGATAGCGCGACGATGAAGAAATGTTCTCAGAGAAGAAACCTTGTCGATAAGTGTGACGTCCGGACGTGCTTCATAAATTTCTTGGCTTCTTTTGTTTATTTAGACAACAATTTTGTTTTGAGAGAATTAATAGACAAGAAAGGTGCTCTGGATCTACTTATTGGTGAGTCTTTTGTGGACAAATATTCAAACGTAATTCTAATCTTATGCGTCCTTAAGATACTGAAAACAGTTCGGTCAGCAAAACACAGCGGATACGTGTATTCAATCGACATTGTCTTCAAAAGTTAACATCTCTGTATCAGTGGCNGGGGGAGGGTAAAACTGTTGATGAAGTACTGAGAA-AAGATTA]
[+] EMBL CD115894 [CATGGCNCGTTGTAGATGAATTTGTTGTTGATGTCGTTGCTGGAGGAGATGTTGTTCAGATACTCAAGTTTCTGGATCCTGGTCACGATCGGAAGGCTGGAGAGTCTTCATAGCACTCTACTTTATTATCTTGAAAACTTCTCGCGAGTTAAGCGCTCGTTTTTCTGATGTTGCTNGAGAGCTTGCCGAGGGATTTCTTGGGGACTCTCGCTTCT ]
[+] EMBL CD115900 [ TTTGTTGTTGATGTCGTTGCTGGAGGAGATGTTGTTCAGATACTCAAGTTTCTGGATACTGGTCAAGATCGGAAGGCAGGAGAGTCTTCAAAGCACTCTACATTATTATCTTGAAAACTTCTCGCGAGTTAAGCACTCGTTTTTCTGATATTGCTAGAGAGCTTGCCGAGGGATTTCTTGAAGACTCTCGCTTCTCATTATGCCTCAGTACAATGAGGAAGTCTCAGAATGCGGAAATCTTAAAAACATCTCTCCAGCTTTTAGCATCTGTCGTGACAGTCAGTGAAGATTTAGCTCGAGCCGTCTTGCGATATATTGATTTTGATAGCGCGACGATGAAGAAATGTTCTCAGAGAAGAAACCTTGTCGATAAGTGTGACGTCCGGACGTGCTTCATAAATTTCTTGGCTTCTTTTGTTTATTTAGACAACAATTTTGTTTTGAGAGAATTAATAGACAAGATAGGTGCTCTGGATCTACTTATTGGTGAGTCTTTTGTGGACAAATATTCAAACGTAATTCTAATCTTATGCGTCCTTAAGATACTGAAAACAGTTCGGTCAGCAAAACACAGCGGATACGTGTATTCAATCGACATTGTCTTCAAAAGTTAACATCTCTGTATCAGTGGCNGGGGGAGGGTAAAACTGTTGATGAAGTACTGAGAA AAGATTA]
[+] EMBL CD115566 [ TTTGTTGTTGATGTCGTTGCTGGAGGAGATGTTGTTCAGATACTCAAGTTTCTGGATACTGGTCAAGATCGGAAGGCAGGAGAGTCTTCAAAGCACTCTACATTATTATCTTGAAAACTTCTCGCGAGTTAAGCACTCGTTTTTCTGATATTGCTAGAGAGCTTGCCGAGGGATTTCTTGAAGACTCTCGCTTCTCATTATGCCTCAGTACAATGAGGAAGTCTCAGAATGCGGAAATCTTAAAAACATCTCTCCAGCTTTTAGCATCTGTCGTGACAGTCAGTGAAGATTTAGCTCGAGCCGTCTTGCGATATATTGATTTTGATAGCGCGACGATGAAGAAATGTTCTCAGAGAAGAAACCTTGTCGATAAGTGTGACGTCCGGACGTGCTTCATAAATTTCTTGGCTTCTCTTGTTTATTTAGACAACAATTTTGTTTTGAGAGAATTAATAGACAAGAAAGGTGCTCTGGATCTACTTATTGGTGAGTCTTTTGTGGACAAATATTCAAACGTAATTCTAATCTTATGCGTCCTTAAGATACTGANNACAGTTCGGTCAGCANAACACAGCGGATACGTGTATTCAATCGACATTGTCTTCAAAAGTT ACATCTCTGTATCAGTGGCGGNGGGAGGGTAAGACTGTTGATGAAGTACTGAGAANAAGATa ]
[+] EMBL CD115863 [ TTTGTTGTTGATGTCGTTGCTGGAGGAGATGTTGTTCAGATACTCAAGTTTCTGGATACTGGTCAAGATCGGAAGGCAGGAGAGTCTTCAAAGCACTCTACATTATTATCTTGAAAACTTCTCGCGAGTTAAGCACTCGTTTTTCTGATATTGCTAGAGAGCTTGCCGAGGGATTTCTTGAAGACTCTCGCTTCTCATTATGCCTCAGTACAATGAGGAAGTCTCAGAATGCGGAAATCTTAAAAACATCTCTCCAGCTTTTAGCATCTGTCGTGACAGTCAGTGAAGATTTAGCTCGAGCCGTCTTGCGATATATTGATTTTGATAGCGCGACGATGAAGAAATGTTCTCAGAGAAGAAACCTTGTCGATAAGTGTGACGTCCGGACGTGCTTCATAAATTTCTTGGCTTCTTTTGTTTATTTAGACAACAATTTTGTTTTGAGAGAATTACTAGACATGAAAGGTGCTCTGGATCTACTTATTGGT ]
[+] EMBL CD115787 [ TTTGTTGTTGATGTCGTTGCTGGAGGAGATGTTGTTCAGATACTCAAGTTTCTGGATACTGGTCAAGATCGGAAGGCAGGAGAGTCTTCAAAGCACTCTACATTATTATCTTGAAAACTTCTCGCGAGTTAAGCACTCGTTTTTCTGATATTGCTAGAGAGCTTGCCGAGGGATTTCTTGAAGACTCTCGCTTCTCATTATGCCTCAGTGCATTGAGGAAGACTCACAATGCGGAAAT ]
consensusID : consensus_8787#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 630 fasta sequence
[GTTGTTGATGTCGTTGCTGGAGGAGATGTTGTTCAGATACTCAAGTTTCTGGATACTGGTCAAGATCGGAAGGCAGGAGAGCTTCTTGCAGTCTTCAAAGCACTCTACATTATTATCTTGAAAACTTCTCGCGAGTTAAGCACTCGTTTTTCTGATGTTGCTAGAGAGCTTGCCGAGGGATTTCTTGAAGACCCTCGCTTCTCATTATGCCTCAGTACAATGAGGAAGTCTCAGAATGCGGAAATCTTAAAAACATCTCTCCAGCTTTTAGCATCTGTCGTGACAGTCAGTGAAGATTTAGCTCGAGCCGTCTTGCGATATATTGATTTTGATAGCGCGACGATGAAGAAATGTTCTCAGAGAAGAAACCTTGTCGATAAGTGTGACGTCCGGACGTGCTTCATAAATTTCTTGGCTTCTTTTGTTTATTTAGACAACAATTTTGTTTTGAGAGAATTAATTGACAAGAAAGGTGCTCTGGATCCACTTATTGGTGAGTCTTTTGTGGACAAATATTCAAACGTAATTCTAATCTTATGCGTCCTTAAGAAAGTAGCTGANAACAGTTCGGTCAGCAAAACACAGCGGATACGTGTATTCAATCGACATTGTCTTCAAAAGTTAACATCT]
[+] EMBL CD158683 [GTTGTTGATGTCGTTGCTGGAGGAGATGTTGTTCAGATACTCAAGTTTCTGGATACTGGTCAAGATCGGAAGGCAGGAGAGCTTCTTGCAGTCTTCAAAGCACTCTACATTATTATCTTGAAAACTTCTCGCGAGTTAAGCACTCGTTTTTCTGATGTTGCTAGAGAGCTTGCCGAGGGATTTCTTGAAGACCCTCGCTTCTCATTATGCCTCAGTACAATGAGGAAGTCTCAGAATGCGGAAATCTTAAAAACATCTCTCCAGCTTTTAGCATCTGTCGTGACAGTCAGTGAAG ]
[+] EMBL CD160573 [ ccccctgctGATACTCAAGTTTCTGGATACTGGTCAAGATCGGAAGGCAGGAGAGCTTCTTGCAGTCTTCAAAGCACTCTACATTATTATCTTGAAGACTTCTCGCGAGTTAAGCACTCGTTTTTCTGATGTTGCTAGAGAGCTTGCCGAGGGATTTCTTGAAGACTCTCGCTTCTCATTATGCCTCAGTACAATGAGGAAGTCTCAGAATGCGGAAATCTTAAAAACATCTCTCCAGCTTTTAGCATCTGTCGTGACAGTCAGTGAAGATTTAGCTCGAGCCGTCTTGCGATATATTGATTTTGATAGCGCGACGATGAAGAAATGTTCTCAGAGAAGAAACCTTGTCGATAAGTGTGACGTCCGGACGTGCTTCATAAATTTCTTGGCTTCTTTTGTTTATTTAGACAACAATTTTGTTTTGAGAGAATTAATTGACAAGAAAGGTGCTCTGGATCCACTTATTGGTGAGTCTTTTGTGGACAAATATTCAAACGTAATTCTAATCTTATGCGTCCTTAAGAAAGTAGCTGANAACAGTTCGGTCAGCAAAACACAGCGGATACGTGTATTCAATCGACATTGTCTTCAAAAGTTAACATCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8787#0 CATGGCNCGTTGTAGATGAATTTGTTGTTGATGTCGTTGCTGGAGGAGATGTTGTTCAGA 60
consensus_8787#1 -----------------------GTTGTTGATGTCGTTGCTGGAGGAGATGTTGTTCAGA 37
*************************************
consensus_8787#0 TACTCAAGTTTCTGGATACTGGTCAAGATCGGAAGGCAGGAGAG----------TCTTCA 110
consensus_8787#1 TACTCAAGTTTCTGGATACTGGTCAAGATCGGAAGGCAGGAGAGCTTCTTGCAGTCTTCA 97
******************************************** ******
consensus_8787#0 AAGCACTCTACATTATTATCTTGAAAACTTCTCGCGAGTTAAGCACTCGTTTTTCTGATA 170
consensus_8787#1 AAGCACTCTACATTATTATCTTGAAAACTTCTCGCGAGTTAAGCACTCGTTTTTCTGATG 157
***********************************************************
consensus_8787#0 TTGCTAGAGAGCTTGCCGAGGGATTTCTTGAAGACTCTCGCTTCTCATTATGCCTCAGTA 230
consensus_8787#1 TTGCTAGAGAGCTTGCCGAGGGATTTCTTGAAGACCCTCGCTTCTCATTATGCCTCAGTA 217
*********************************** ************************
consensus_8787#0 CAATGAGGAAGTCTCAGAATGCGGAAATCTTAAAAACATCTCTCCAGCTTTTAGCATCTG 290
consensus_8787#1 CAATGAGGAAGTCTCAGAATGCGGAAATCTTAAAAACATCTCTCCAGCTTTTAGCATCTG 277
************************************************************
consensus_8787#0 TCGTGACAGTCAGTGAAGATTTAGCTCGAGCCGTCTTGCGATATATTGATTTTGATAGCG 350
consensus_8787#1 TCGTGACAGTCAGTGAAGATTTAGCTCGAGCCGTCTTGCGATATATTGATTTTGATAGCG 337
************************************************************
consensus_8787#0 CGACGATGAAGAAATGTTCTCAGAGAAGAAACCTTGTCGATAAGTGTGACGTCCGGACGT 410
consensus_8787#1 CGACGATGAAGAAATGTTCTCAGAGAAGAAACCTTGTCGATAAGTGTGACGTCCGGACGT 397
************************************************************
consensus_8787#0 GCTTCATAAATTTCTTGGCTTCTTTTGTTTATTTAGACAACAATTTTGTTTTGAGAGAAT 470
consensus_8787#1 GCTTCATAAATTTCTTGGCTTCTTTTGTTTATTTAGACAACAATTTTGTTTTGAGAGAAT 457
************************************************************
consensus_8787#0 TAATAGACAAGAAAGGTGCTCTGGATCTACTTATTGGTGAGTCTTTTGTGGACAAATATT 530
consensus_8787#1 TAATTGACAAGAAAGGTGCTCTGGATCCACTTATTGGTGAGTCTTTTGTGGACAAATATT 517
**** ********************** ********************************
consensus_8787#0 CAAACGTAATTCTAATCTTATGCGTCCTTAAGATA----CTGAAAACAGTTCGGTCAGCA 586
consensus_8787#1 CAAACGTAATTCTAATCTTATGCGTCCTTAAGAAAGTAGCTGANAACAGTTCGGTCAGCA 577
********************************* * **** ****************
consensus_8787#0 AAACACAGCGGATACGTGTATTCAATCGACATTGTCTTCAAAAGTTAACATCTCTGTATC 646
consensus_8787#1 AAACACAGCGGATACGTGTATTCAATCGACATTGTCTTCAAAAGTTAACATCT------- 630
*****************************************************
consensus_8787#0 AGTGGCNGGGGGAGGGTAAAACTGTTGATGAAGTACTGAGAAAAGATTA 695
consensus_8787#1 -------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||