These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8796#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1452 fasta sequence [CGGGCCAGAATTCGGCACGAGGGAGAAACAACCAATTAAAGCATTTAAGTACGTGACTAATTACTTCAAATTATACAATGAATGTCAGTGTCTAAGAGCTGGCCGCCGTTTAATGATTCATGAACAGCTGATGAAATTGTTTGACGGAGTGGAAAAAGGAGAAAATAATCACCGTAGTTCACAAAATGGTTATACTACCGCTGCTACTACCACTAACAATGTTACTAATAATAAACCATCTAATGCTGATGATAAAAATAATGCTTCTGACCGTAATGGAATAAAAAATACAACCAGCCAAGTGAAACGTAGAAAAATCCAAAAGCCTGTCAATATTCACGGTAAAGATTATGAGAATAACAATGATAGTACTGAAGGAATTTGTCGTACGAATGAATTTTTTATTGACAGTGAAAAAGAAGAATCACTCACGGCGATACCTTCGCTTGTGATTAATATCAAAGAACCCCCTAAAGTTGAAATTACTGCTCCTATCAATGCATCAGCTAAAGAAATTGGTACACATCGTCCACATTATGTATGGTTTGAAAATACTTCACCGAACAAACTTCAAGAACACCAATCACCTCAAGAGTCCAATACTTTGTTACTCACAGTTGAACAATGGACTGTACGCTATTATATGGCTAATAAAAATTTTGAACACGTCAGCGCCAGTGAATCACAAATATATCATCTTTTATTCTGCATACTTTTTTATGATATTTTATTCGAAATATCACCATCTCCACCGGATGTCTTCTATTCATATCGTCAGTCAGCGCCATTAGATTTATTTACAGATGAATTTTATCAGTCAAGAAAAGATTTAATCGATGCTAGATTGCAATGGCTCTTGGCTGTTGACCAATCAGATGATCATTCTAATTCTTTGGCATTTCGTATCCATACGTATTGGGAATTACATAATGGTGAACGTTGCTTGTGGGCTAATTGGAATTTATT-AAAAAATTCACAGGAGCTTATAGACATATTTTGGTGCCTTGGACCTTCTGTAGTTCACGATGTTTGTCGTAAATTAGCTACAGACTACAGAAATTGGAGGTCGGGTCTTCCTGATCTTTTATTATGGAGTCCCACAGAAACGCGAGCTAAGATTGTAGAAGTTAAAGGACCCGGCGACCATTTATCCACTCAACAAATAATGTGGCTTGATGTACTTGTCCAGGCTGGTGCTGATGTAGAAATTTGCTTAATATCAGCTGAACCACTAAAATCGCTTCGTTCAAAATTCAACAATTGAAATGGAACAAAATAATAAGATTTAATTAATTTATTATTAGAAGTAAAAAGAAAAAACAACAACAACAGTATACCGTTGAATTAAATTTTTTACCACATCATTTCCATATCTGTCTTTACATCACGATTCTCCTGTATTTTCAAATCTTAACAATAAATACTTTCAAAGATTTANAAAAAAAAAAAAAA] [+] EMBL CD082914 [CGGGCCAGAATTCGGCACGAGGGAGAAACAACCAATTAAAGCATTTAAGTACGTGACTAATTACTTCAAATTATACAATGAATGTCAGTGTCTAAGAGCTGGCCGCCGTTTAATGATTCATGAACAGCTGATGAAATTGTTTGACGGAGTGGAAAAAGGAGAAAATAATCACCGTAGTTCACAAAATGGTTATACTACCGCTGCTACTACCACTAACAATGTTACTAATAATAAACCATCTAATGCTGATGATAAAAATAATGCTTCTGACCGTAATGGAATAAAAAATACAACCAGCCAAGTGAAACGTAGAAAAATCCAAAAGCCTGTCAATATTCACGGTAAAGATTATGAGAATAACAATGATAGTACTGAAGGAATTTGTCGTACGAATGAATTTTTTATTGACAGTGAAAAAGAAGAATCACTCACGGCGATACCTTCGCTTGTGATTAATATCAAAGAACCCCCTAAAGTTGAAATTACTGCTCCTATCAATGCATCAGCTAAAGAAATTGGTACACATCGTCCACATTATGTATGGTTTGAAAATACTTCACCGAACAAACTTCAAGAACACCAATCACCTCAAGAGTCCAATACTTTGTTACTCACAGTTGAACAATGGACTGTACGCTATTATATGGCTAATAAAAATTTTGAACACGTCAGCGCCA ] [+] EMBL CD138969 [ CAATGTTACTAATAATAAACCATCTAATGCTGATGATAAAAATAATGCTTCTGACCGTAATGGAATAAAAAATACAACCAGCCAAGTGAAACGTAGAAAAATCCAAAAGCCTGTCAATATTCACGGTAAAGATTATGAGAATAACAATGATAGTACTGAAGGAATTTGTCGTACGAATGAATTTTTTATTGACAGTGAAAAAGAAGAATCACTCACGGCGATACCTTCGCTTGTGATTAATATCAAAGAACCCCCTAAAGTTGAAATTACTGC ] [+] EMBL CD125800 [ TAGAAAAATCCAAAAGCCTGTCAATATACACGG AAAGATTATGAGAATAACAATGATAGTACTGAAGGAATTCGTCGTACGAATGAATTTTTTATTGACAGTGAAAAAGAAGAATCACTCACGGCGATACCTTCGCTTGTGATTAATATCAAAGAACCCCCTAAAGTTGAAATTACTGCTCCTATCAATGCATCAGCTAAAGACATTGGTACACATCGTCCACATTATGTATGGTTTGAAAATACTTCACTGAACAAACTTCAAGAACACCAATCACCTCAAGAGTCCAATACTTTGTTACTCACAGTTGAACAATGGACTGTACGCTATTATATGGCTAATAAAAATTTTGAACACGGTATACATTGTGAATCACAAATATATCATCTTTTATTCTGCATACTTTTTTATGATATTTTATTCGAAATATCACCATCTCCACCGGATGTCTTCTATTCATATCGTCAGTCAGCGCCATTAGATTTATTTACAGATGAATT ] [+] EMBL CD132697 [ TCTTCTATTCATATCGTCAGTCAGCGCCATTAGATTTATTTACAGATGAATTTTATCAGTCAAGAAAAGATTTAATCGATGCTAGATTGCAATGGCTCTTGGCTGTTGACCAATCAGATGATCATTCTAATTCTTTGGCATTTCGTATCCATACGTATTGGGAATTACATAATGGTGAACGTTGCTTGTGGGCTAATTGGAATTTATT AAAAAATTCACAGGAGCTTATAGACATATTTTGGTGCCTTGGACCTTCTGTAGTTCACGATGTTTGTCGTAAATTAGCTACAGACTACAGAAATTGGAGGTCGGGTCTTCCTGATCTTTTATTATGGAGTCCCACAGAAACGCGAGCTAAGATTGTAGAAGTTAAAGGACCCGGCGACCATTTATCCACTCAACAAATAATGTGGCTTG ] [-] EMBL CD132659 [ CTTCTATTCATATCGTCAGTCAGCGCCATTAGATTTATTTACAGATGAATTTTATCAGTCAAGAAAAGATTTAATCGATGCTAGATTGCAATGGCTCTTGGCTGTTGACCAATCAGATGATCATTCTAATTCTTTGGCATTTCGTATCCATACGTATTGGGAATTACATAATGGTGAACGTTGCTTGTGGGCTAATTGGGATTTATTAAAAAAATTCACAGGAGCTTATAGACATATTTTGGTGCCTTGGACCTTCTGTAGTTCACGATGTTTGTCGTAAATTAGCTACAGACTACAGAAATTGGAGGTCGGGTCTTCCTGATCTTTTATTATGGAGTCCCACAGAAACGCGAGCTAAGATTGTAGAAGTTAAAGGACCCGGCGACCATTTATCCACTCAACAAATAATGTGGCTTGAT ] [-] EMBL AI395638 [ GAGGTCGGGTCTTCCTAATCTTTTATTATGGAGTCCCACAGAAACGCGAGCTAAGATTGTAGAATTAAAAGGACCCGGCGACCATTTATCCACTCAACAAATAATGTGGCTTGATGTACTTGTCCAGGCTGGTGCTGATGTAGAAATTTGCTTAATATCAGCTGAACCACTAAAATCGCTTCGTTCAAAATTCAACAATTGAAATGGAACAAAATAATAAGATTTAATTAATTTATTATTAGAAGTAAAAAGAAAAAACAACAACAACAGTATACCGTTGAATTAAATTTTTTACCACATCATTTCCATATCTGTCTTTACATCACGATTCTCCTGTATTTTCAAATCTTAACAATAAATACTTTCAAAGATTTANAAAAAAAAAAAAAA] consensusID : consensus_8796#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 623 fasta sequence [CCAATCAGATGATCATTCTAATTCTTTGGCATTTCGTATCCATACGTATTGGGAATTACATAATGGTGAACGTTGCTTGTGGGCTAATTGGGATTTATTAAAAAATTCACAGGAGCTTATATGATAATTTATGGAGTAATAACAACTCCATAAATAAGGAATTATAGGAATTTTTTCATTTCAGGACATATTTTGGTGCCTTGGACCTTCTGTAGTTCACGATGTTTGTCGTAAATTAGCTACAGACTACAGAAATTGGAGGTCGGGTCTTCCTGATCTTTTATTATGGAGTCCCACAGAAACGCGAGCTAAGATTGTAGAAGTTAAAGGACCCGGCGACCATTTATCCACTCAACAAATAATGTGGCTTGATGTACTTGTCCAGGCTGGTGCTGATGTAGAAATTTGCTTAATATCAGCTGAACCACTAAAATCGCTTCGTTCAAAATTCAACAATTGAAATGGAACAAAATAATAAGATTTAATTAATTTATTATTAGAAGTAAAAAGAAAAAACAACAACAACAGTATACCGTTGAATTAAATTTTTTACCACATCATTTCCATATCTGTCTTTACATCACGATTCTCCTGTATTTTCAAATCTTAATAATAAATACTTT] [-] EMBL CD076497 [CCAATCAGATGATCATTCTAATTCTTTGGCATTTCGTATCCATACGTATTGGGAATTACATAATGGTGAACGTTGCTTGTGGGCTAATTGGGATTTATTAAAAAATTCACAGGAGCTTATATGATAATTTATGGAGTAATAACAACTCCATAAATAAGGAATTATAGGAATTTTTTCATTTCAGGACATATTTTGGTGCCTTGGACCTTCTGTAGTTCACGATGTTTGTCGTAAATTAGCTACAGACTACAGAAATTGGAGGTCGGGTCTTCCTGATCTTTTATTATGGAGTCCCACAGAAACGCGAGCTAAGATTGTAGAAGTTAAAGGACCCGGCGACCATTTATCCACTCAACAAATAATGTGGCTTGATGTACTTGTCCAGGCTGGTGCTGATGTAGAAATTTGCTTAATATCAGCTGAACCACTAAAATCGCTTCGTTCAAAATTCAACAATTGAAATGGAACAAAATAATAAGATTTAATTAATTTATTATTAGAAGTAAAAAGAAAAAACAACAACAACAGTATACCGTTGAATTAAATTTTTTACCACATCATTTCCATATCTGTCTTTACATCACGATTCTCCTGTATTTTCAAATCTTAATAATAAATACTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8796#0 CGGGCCAGAATTCGGCACGAGGGAGAAACAACCAATTAAAGCATTTAAGTACGTGACTAA 60 consensus_8796#1 ------------------------------------------------------------ consensus_8796#0 TTACTTCAAATTATACAATGAATGTCAGTGTCTAAGAGCTGGCCGCCGTTTAATGATTCA 120 consensus_8796#1 ------------------------------------------------------------ consensus_8796#0 TGAACAGCTGATGAAATTGTTTGACGGAGTGGAAAAAGGAGAAAATAATCACCGTAGTTC 180 consensus_8796#1 ------------------------------------------------------------ consensus_8796#0 ACAAAATGGTTATACTACCGCTGCTACTACCACTAACAATGTTACTAATAATAAACCATC 240 consensus_8796#1 ------------------------------------------------------------ consensus_8796#0 TAATGCTGATGATAAAAATAATGCTTCTGACCGTAATGGAATAAAAAATACAACCAGCCA 300 consensus_8796#1 ------------------------------------------------------------ consensus_8796#0 AGTGAAACGTAGAAAAATCCAAAAGCCTGTCAATATTCACGGTAAAGATTATGAGAATAA 360 consensus_8796#1 ------------------------------------------------------------ consensus_8796#0 CAATGATAGTACTGAAGGAATTTGTCGTACGAATGAATTTTTTATTGACAGTGAAAAAGA 420 consensus_8796#1 ------------------------------------------------------------ consensus_8796#0 AGAATCACTCACGGCGATACCTTCGCTTGTGATTAATATCAAAGAACCCCCTAAAGTTGA 480 consensus_8796#1 ------------------------------------------------------------ consensus_8796#0 AATTACTGCTCCTATCAATGCATCAGCTAAAGAAATTGGTACACATCGTCCACATTATGT 540 consensus_8796#1 ------------------------------------------------------------ consensus_8796#0 ATGGTTTGAAAATACTTCACCGAACAAACTTCAAGAACACCAATCACCTCAAGAGTCCAA 600 consensus_8796#1 ------------------------------------------------------------ consensus_8796#0 TACTTTGTTACTCACAGTTGAACAATGGACTGTACGCTATTATATGGCTAATAAAAATTT 660 consensus_8796#1 ------------------------------------------------------------ consensus_8796#0 TGAACACGTCAGCGCCAGTGAATCACAAATATATCATCTTTTATTCTGCATACTTTTTTA 720 consensus_8796#1 ------------------------------------------------------------ consensus_8796#0 TGATATTTTATTCGAAATATCACCATCTCCACCGGATGTCTTCTATTCATATCGTCAGTC 780 consensus_8796#1 ------------------------------------------------------------ consensus_8796#0 AGCGCCATTAGATTTATTTACAGATGAATTTTATCAGTCAAGAAAAGATTTAATCGATGC 840 consensus_8796#1 ------------------------------------------------------------ consensus_8796#0 TAGATTGCAATGGCTCTTGGCTGTTGACCAATCAGATGATCATTCTAATTCTTTGGCATT 900 consensus_8796#1 ---------------------------CCAATCAGATGATCATTCTAATTCTTTGGCATT 33 ********************************* consensus_8796#0 TCGTATCCATACGTATTGGGAATTACATAATGGTGAACGTTGCTTGTGGGCTAATTGGAA 960 consensus_8796#1 TCGTATCCATACGTATTGGGAATTACATAATGGTGAACGTTGCTTGTGGGCTAATTGGGA 93 ********************************************************** * consensus_8796#0 TTTATTAAAAAATTCACAGGAGCTTATA-------------------------------- 988 consensus_8796#1 TTTATTAAAAAATTCACAGGAGCTTATATGATAATTTATGGAGTAATAACAACTCCATAA 153 **************************** consensus_8796#0 -------------------------------GACATATTTTGGTGCCTTGGACCTTCTGT 1017 consensus_8796#1 ATAAGGAATTATAGGAATTTTTTCATTTCAGGACATATTTTGGTGCCTTGGACCTTCTGT 213 ***************************** consensus_8796#0 AGTTCACGATGTTTGTCGTAAATTAGCTACAGACTACAGAAATTGGAGGTCGGGTCTTCC 1077 consensus_8796#1 AGTTCACGATGTTTGTCGTAAATTAGCTACAGACTACAGAAATTGGAGGTCGGGTCTTCC 273 ************************************************************ consensus_8796#0 TGATCTTTTATTATGGAGTCCCACAGAAACGCGAGCTAAGATTGTAGAAGTTAAAGGACC 1137 consensus_8796#1 TGATCTTTTATTATGGAGTCCCACAGAAACGCGAGCTAAGATTGTAGAAGTTAAAGGACC 333 ************************************************************ consensus_8796#0 CGGCGACCATTTATCCACTCAACAAATAATGTGGCTTGATGTACTTGTCCAGGCTGGTGC 1197 consensus_8796#1 CGGCGACCATTTATCCACTCAACAAATAATGTGGCTTGATGTACTTGTCCAGGCTGGTGC 393 ************************************************************ consensus_8796#0 TGATGTAGAAATTTGCTTAATATCAGCTGAACCACTAAAATCGCTTCGTTCAAAATTCAA 1257 consensus_8796#1 TGATGTAGAAATTTGCTTAATATCAGCTGAACCACTAAAATCGCTTCGTTCAAAATTCAA 453 ************************************************************ consensus_8796#0 CAATTGAAATGGAACAAAATAATAAGATTTAATTAATTTATTATTAGAAGTAAAAAGAAA 1317 consensus_8796#1 CAATTGAAATGGAACAAAATAATAAGATTTAATTAATTTATTATTAGAAGTAAAAAGAAA 513 ************************************************************ consensus_8796#0 AAACAACAACAACAGTATACCGTTGAATTAAATTTTTTACCACATCATTTCCATATCTGT 1377 consensus_8796#1 AAACAACAACAACAGTATACCGTTGAATTAAATTTTTTACCACATCATTTCCATATCTGT 573 ************************************************************ consensus_8796#0 CTTTACATCACGATTCTCCTGTATTTTCAAATCTTAACAATAAATACTTTCAAAGATTTA 1437 consensus_8796#1 CTTTACATCACGATTCTCCTGTATTTTCAAATCTTAATAATAAATACTTT---------- 623 ************************************* ************ consensus_8796#0 NAAAAAAAAAAAAAA 1452 consensus_8796#1 --------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||