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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8801#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 720 fasta sequence
[GCAGTACGGTAATGCAGCTGCATGGCATGTNNTTTTTTTTTTTTTTTTTTTTTTACCGATCATTATCTCTTTTACTATTAATAGCCAAACCTTTAAGAAAAGAAAACGGATATCAACCAATAGTAGAAGGATATTGCCCGCTACATGTTGGAGCATTCAACTTTTAGGTAGATATTATTTTAAAATAATTAGCTAATTGATGTTAGAAAATAAGTTGAAGACATTTTGTGATTTGTTAAACAAAGGAACGATCGAATAAATACACAGAACGTAATCAGTTACAAAGTCATATTAGTAATAACTACATTTTGTACAAATATACTGAGTGGGGTCCATCAATAATGGATTTGGATGCTTGAATATTAGGCAGCGGATATCTGGCTGTAATGACGATTGAACCATTACTTAATTCTTTGGTTAGTTTCTGTTCGATAGATTCCATCATTGTATCTACACCAAACAGTAAGACTGTATCATATACAGAAAGATTAGTTTTCCACATATTTTTACAAGAGAAAGTTACTTTGGATGTAGTGAGTAATTTATTACTACAAAAGAGTTTGATACGTGAATACCAAACAAGCGGACGATTTAACTCTACACCATGAGCAGAAGTGATTTTTAATGTTGGCCGACTTAATAAATCAATCAACACGCGTCCATCACCACTGCCTAAATCAATTATAGATCCTAAAGACTTATCATTNTTTTGACTTTGCG]
[+] EMBL BF936121 [GCAGTACGGTAATGCAGCTGCATGGCATGTNNTTTTTTTTTTTTTTTTTTTTTTACCGATCATTATCTCTTTTACTATTAATAGCCAAACCTTTAAGAAAAGAAAACGGATATCAACCAATAGTAGAAGGATATTGCCCGCTACATGTTGGAGCATTCAACTTTTAGGTAGATATTATTTTAAAATAATTAGCTAATTGATGTTAGAAAATAAGTTGAAGACATTTTGTGATTTGTTAAACAAAGGAACGATCGAATAAATACACAGAACGTAATCAGTTACAAAGTCATATTAGTAATAACTACATTTTGTACAAATATACTGAGTGGGGTCCATCAATAATGGATTTGGATGCTTGAATATTAGGCAGCGGATATCTGGCTGTAATGACGATTGAACCATTACTTAATTCTTTGGTTAGTTTCTGTTCGATAGATTC ]
[+] EMBL BF936644 [GCAGTACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTACCGATCATTATCTCTTTTACTATTAATAGCCAAACCTTTAAGAAAAGAAAACGGATATCAACCAATAGTAGAAGGATATTGCCCGCTACATGTTGGAGCATTCAACTTTTAGGTAGATATTATTTTAAAATAATTAGCTAATTGATGTTAGAAAATAAGTTGAAGACATTTTGTGATTTGTTAAACAAAGGAACGATCGAATAAATACACAG ]
[+] EMBL CD074801 [ TATCTCTTTTACTATTAATAGCCAAACCTTTAAGAAAAGAAAACGAATATCAACCAATAGTAGAAGGATATTACCCGCTACATATTGGAGCATTCAACTTTTAGGTAGATATTATTTTAAAATAATTAGCTAATTGATGTTAGGAAATAAGTTGAAGACATTTTGTGGTTTGTTAAACAAAGGAACGATCGAACAAATACACAGAACGTAATCAGTTACAAAGTCATATTAGTAATAACTACATTTTGTACAAATATACTGAGTGGGGTCCATCAATAATGGATTTGGATGCTTGAATATTAGGCAGCGGATATCTGGCTGTAATGACGATTGAACCATTACTTAATTCTTTGGTTAGTTTCTGTTCGATAGATTCCATCATTGTATCTACACCAAACAGTAAGACTGTATCATATACAGAAAGATTAGTTTTCCACATATTTTTACAAGAGAAAGTTACTTTGGATGTAGTGAGTAATTTATTACTACAAAAGAGTTTGATACGTGAATACCAAACAAGCGGACGATTTAACTCTACACCATGAGCAGAAGTGATTTTTAATGTTGGCCGACTTAATAAATCAATCAACACGCGTCCATCACCACTGCCTAAATCAATTATAGATCCTAAAGACTTATCATTNTTTTGACTTTGCG]
consensusID : consensus_8801#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 609 fasta sequence
[AATTCTTGGTTTAGTTTCTGTTCGATAGATTCCATCATTGTATCTACACCAAACAGTAAGACTGTATCATATACAGAAAGATTAGTTTTCCACATATTTTTACAAGAGAAAGTTACTTTGGATGTAGTGAGNNNNNNNNNNNNNNNNAAGAGTTTGATACGTGAATACCAAACAAGCGGACGATTTAACTCTACACCATGAGCAGAAGTGATTTTTAATGTTGGCCGACTTAATAAATCAATCAACACGCGTCCATCACCACTGCCTAAATCAATTATAGATCCTAAAGACCTTGAGAAGCTTGTATGTATAATCTAGTTGGGGCGACGTAGCAGGTAAGAATGGTAAACAGATTTTCCGAAATGCAGGAGAAATGAATGACCAAAAAATGTAGCATGAAGTAACAGTCGTAATCCCGNNNNNNNNNNNNNNNNNNNNNNNAAGTAGTGGATGTCTATTTGACGTTGAGTGAAAACTAGAATGTCCGATTATAGACTCCAATGGAGCATCTGTATTCATTTAAATAACACTATATTCCGTTGTAAATGAAAAGCTTGATATAGTGCAGGTAAAAATGGAGGGGAACTTGGTATTAGTTCAGGCGGTAAC]
[-] EMBL CD080975 [AATTCTTGGTTTAGTTTCTGTTCGATAGATTCCATCATTGTATCTACACCAAACAGTAAGACTGTATCATATACAGAAAGATTAGTTTTCCACATATTTTTACAAGAGAAAGTTACTTTGGATGTAGTGAGNNNNNNNNNNNNNNNNAAGAGTTTGATACGTGAATACCAAACAAGCGGACGATTTAACTCTACACCATGAGCAGAAGTGATTTTTAATGTTGGCCGACTTAATAAATCAATCAACACGCGTCCATCACCACTGCCTAAATCAATTATAGATCCTAAAGACCTTGAGAAGCTTGTATGTATAATCTAGTTGGGGCGACGTAGCAGGTAAGAATGGTAAACAGATTTTCCGAAATGCAGGAGAAATGAATGACCAAAAAATGTAGCATGAAGTAACAGTCGTAATCCCGNNNNNNNNNNNNNNNNNNNNNNNAAGTAGTGGATGTCTATTTGACGTTGAGTGAAAACTAGAATGTCCGATTATAGACTCCAATGGAGCATCTGTATTCATTTAAATAACACTATATTCCGTTGTAAATGAAAAGCTTGATATAGTGCAGGTAAAAATGGAGGGGAACTTGGTATTAGTTCAGGCGGTAAC]
consensusID : consensus_8801#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 521 fasta sequence
[TTTTTTTTTTTTTTTTAAGTTGAAGACATTTTGTGATTTGTTAAACAAAGGAACGATCGAATAAATACACAGAACGTAATCAGTTACAAAGTCATATTAGTAATAACTACATTTTGTACAAATATACTGAGTGGGGTCCATCAATAATGGATTTGGATGCTTGAATATTAGGCAGCGGATATCTGGCTGTAATGACGATTGAACCATTACTTAATTCTTTGGTTAGTTTCTGTTCGATAGATTCCATCATTGAATCTACACCAAACAGTAAGACTGTATCATATACAGAAAGATTAGTTTTCCACATATTTTTACAAGAGAAAGTTACTTTGGGTGTAGTGAGTAATTTATTACTACAGAAGAGTTTGATACGTGAATACCATACAAGCGGACGATTTAACTCTACACCATGAGCAGAAGTGATTTTTAGTTTTGGGCGACTTAATAAATCAATCAACACGCGTCCATCACCACTGCCTAAATCAATTATAGATCCTAAGGACTTATCATTTTTTTGACTT]
[+] EMBL AI395805 [TTTTTTTTTTTTTTTTAAGTTGAAGACATTTTGTGATTTGTTAAACAAAGGAACGATCGAATAAATACACAGAACGTAATCAGTTACAAAGTCATATTAGTAATAACTACATTTTGTACAAATATACTGAGTGGGGTCCATCAATAATGGATTTGGATGCTTGAATATTAGGCAGCGGATATCTGGCTGTAATGACGATTGAACCATTACTTAATTCTTTGGTTAGTTTCTGTTCGATAGATTCCATCATTGAATCTACACCAAACAGTAAGACTGTATCATATACAGAAAGATTAGTTTTCCACATATTTTTACAAGAGAAAGTTACTTTGGGTGTAGTGAGTAATTTATTACTACAGAAGAGTTTGATACGTGAATACCATACAAGCGGACGATTTAACTCTACACCATGAGCAGAAGTGATTTTTAGTTTTGGGCGACTTAATAAATCAATCAACACGCGTCCATCACCACTGCCTAAATCAATTATAGATCCTAAGGACTTATCATTTTTTTGACTT]
consensusID : consensus_8801#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 521 fasta sequence
[TTTTTTTTTTTTTTGGAAGACATTTTGTGATTTGTTAAACAAAGGAACGATCGAATAAATACACAGAACGTAATCAGTTACAAAGTCATATTAGTAATAACTACATTTTGTACAAATATACTGAGTGGGGTCCATCAATAATGGATTTGGATGCTTGAATATTAGGCAGCGGATATCTGGCTGTAATGACGATTGAACCATTACTTAATTCTTTGGTTAGTTTCTGTTCGATAGATTCCATCATTGAATCTACACCAAACAGTAAGACTGTATCATATACAGAAAGATTAGTTTTCCACATATTTTTACAAGAGAAAGTTACTTTGGGTGTAGTGAGTAATTTATTACTACAAAAGAGTTTGATACGTGAATACCAAACAAGCGGACGATTTAACTCTACACCATGAGCAGAAATGATTTTTAATGTTGGCCGACTTAATAAATCAATCAACTATGATTTAGGAAAAAAACACCGAAAGAAAAACAAAAGCAACTAAGCAATAAAAGTACAACATTATATG]
[+] EMBL AI394750 [TTTTTTTTTTTTTTGGAAGACATTTTGTGATTTGTTAAACAAAGGAACGATCGAATAAATACACAGAACGTAATCAGTTACAAAGTCATATTAGTAATAACTACATTTTGTACAAATATACTGAGTGGGGTCCATCAATAATGGATTTGGATGCTTGAATATTAGGCAGCGGATATCTGGCTGTAATGACGATTGAACCATTACTTAATTCTTTGGTTAGTTTCTGTTCGATAGATTCCATCATTGAATCTACACCAAACAGTAAGACTGTATCATATACAGAAAGATTAGTTTTCCACATATTTTTACAAGAGAAAGTTACTTTGGGTGTAGTGAGTAATTTATTACTACAAAAGAGTTTGATACGTGAATACCAAACAAGCGGACGATTTAACTCTACACCATGAGCAGAAATGATTTTTAATGTTGGCCGACTTAATAAATCAATCAACTATGATTTAGGAAAAAAACACCGAAAGAAAAACAAAAGCAACTAAGCAATAAAAGTACAACATTATATG]
consensusID : consensus_8801#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 398 fasta sequence
[AACTCACTCATCAATTTGACCAAATAACGTTTTGGTATTTTATCTGATGTCAGTTCATAATGAAAACTCTGAATCTAGTTCCTAACCTTAACCATCAACTGTAGATTATAGTTTCAATTCCTCACATTCTTTATAACCTTCATCTAGTCCTAGTTAATATTCAGACATTCTCAAGGCCACTTTGGCGTCGCCAAATAGTCGTCCGTGAATCATAGTACCACCTCATCGTTACCGCCTGAACTAATACCAAGTTCCCCTCCATTTCTACCATCCTTGTGTGCTTGGATGTTCTTCTGCATTATATCAAGCTTTTCATTTACAACGGAATATAGTGTTATTTAAATGAATACAGATGCTCCATTGGAGTCGATAATCGGACATTCTAGTATTCACTCAAC]
[+] EMBL AI976715 [AACTCACTCATCAATTTGACCAAATAACGTTTTGGTATTTTATCTGATGTCAGTTCATAATGAAAACTCTGAATCTAGTTCCTAACCTTAACCATCAACTGTAGATTATAGTTTCAATTCCTCACATTCTTTATAACCTTCATCTAGTCCTAGTTAATATTCAGACATTCTCAAGGCCACTTTGGCGTCGCCAAATAGTCGTCCGTGAATCATAGTACCACCTCATCGTTACCGCCTGAACTAATACCAAGTTCCCCTCCATTTCTACCATCCTTGTGTGCTTGGATGTTCTTCTGCATTATATCAAGCTTTTCATTTACAACGGAATATAGTGTTATTTAAATGAATACAGATGCTCCATTGGAGTCGATAATCGGACATTCTAGTATTCACTCAAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8801#0 GCAGTACGGTAATGCAGCTGCATGGCATGTNNTTTTTTTTTTTTTTTTTTTTTTACCGAT 60
consensus_8801#2 ------------------------------------------------------------
consensus_8801#3 ------------------------------------------------------------
consensus_8801#1 ------------------------------------------------------------
consensus_8801#4 ------------------------------------------------------------
consensus_8801#0 CATTATCTCTTTTACTATTAATAGCCAAACCTTTAAGAAAAGAAAACGGATATCAACCAA 120
consensus_8801#2 ------------------------------------------------------------
consensus_8801#3 ------------------------------------------------------------
consensus_8801#1 ------------------------------------------------------------
consensus_8801#4 ------------------------------------------------------------
consensus_8801#0 TAGTAGAAGGATATTGCCCGCTACATGTTGGAGCATTCAACTTTTAGGTAGATATTATTT 180
consensus_8801#2 ------------------------------------------------------------
consensus_8801#3 ------------------------------------------------------------
consensus_8801#1 ------------------------------------------------------------
consensus_8801#4 ------------------------------------------------------------
consensus_8801#0 TAAAATAATTAGCTAATTGATGTTAGAAAATAAGTTGAAGACATTTTGTGATT-TGT-TA 238
consensus_8801#2 ---------------TTTTTTTTTTTTTTTTAAGTTGAAGACATTTTGTGATT-TGT-TA 43
consensus_8801#3 ---------------------TTTTTTTTTTTTTTGGAAGACATTTTGTGATT-TGT-TA 37
consensus_8801#1 --------------AATTCTTGGTTTAGTTTCTGTTCGATAGATTCCATCATTGTATCTA 46
consensus_8801#4 ------------------------------------------------------AACTCA 6
*
consensus_8801#0 AACAAAGGAACGATCGAATAA-ATACACAGAACGTAATCAGTTACAAAGTCATATTAGTA 297
consensus_8801#2 AACAAAGGAACGATCGAATAA-ATACACAGAACGTAATCAGTTACAAAGTCATATTAGTA 102
consensus_8801#3 AACAAAGGAACGATCGAATAA-ATACACAGAACGTAATCAGTTACAAAGTCATATTAGTA 96
consensus_8801#1 CACCAAACAGTAAGACTGTATCATATACAGAAAG--ATTAGTTTTCCA--CATATTTTTA 102
consensus_8801#4 CTCATCAATTTGACCAAATAACGT-TTTGGTATTTTATCTGATGTCAGTTCATAAT-GAA 64
* * ** * * * ** * * **** * *
consensus_8801#0 ATAACTACATTTTGTACAAATATACTGAGTGGGGTCCATCAATAATGGATTTGGATGCTT 357
consensus_8801#2 ATAACTACATTTTGTACAAATATACTGAGTGGGGTCCATCAATAATGGATTTGGATGCTT 162
consensus_8801#3 ATAACTACATTTTGTACAAATATACTGAGTGGGGTCCATCAATAATGGATTTGGATGCTT 156
consensus_8801#1 CAAGAGAAAGTTACTTTGGATGTAGTGAGNNNNNNNNNNNNNNNNAAGAGTTTGATACGT 162
consensus_8801#4 AACTCTGAATCTAGTTCCTA-ACCTTAACCATCAACTGTAGATTATAGTTTCAATTCCTC 123
* * * * * * * * * *
consensus_8801#0 GAATATTAGGCA-GCGGAT-ATCTGGCTGTA-ATGACGATT-GAACCATTACTTAATTCT 413
consensus_8801#2 GAATATTAGGCA-GCGGAT-ATCTGGCTGTA-ATGACGATT-GAACCATTACTTAATTCT 218
consensus_8801#3 GAATATTAGGCA-GCGGAT-ATCTGGCTGTA-ATGACGATT-GAACCATTACTTAATTCT 212
consensus_8801#1 GAATACCAAACAAGCGGACGATTTAACTCTACACCATGAGCAGAAGTGATTTTTAATG-- 220
consensus_8801#4 ACATTCTTTATA-ACCTTC-ATCTAGTCCTAGTTAATATTC--AGACATT-CTCAA---- 174
** * * ** * ** * * * * **
consensus_8801#0 TTGGTTAGTTT--CTGTTCGATAGAT-----TCCATCATTG-TATCTACACCAA--ACAG 463
consensus_8801#2 TTGGTTAGTTT--CTGTTCGATAGAT-----TCCATCATTG-AATCTACACCAA--ACAG 268
consensus_8801#3 TTGGTTAGTTT--CTGTTCGATAGAT-----TCCATCATTG-AATCTACACCAA--ACAG 262
consensus_8801#1 TTGGCCGACTTAATAAATCAATCAACACGCGTCCATCACCACTGCCTAAATCAATTATAG 280
consensus_8801#4 --GGCCACTTT--GGCGTCGCCAAATAGTCGTCCGTGAATCATAGTACCACCTC--ATCG 228
** ** ** * *** * * * * * *
consensus_8801#0 T-----AAGACTGT----ATCATATACAGAAAGATTAGTTTT--CCACATATTT--TTAC 510
consensus_8801#2 T-----AAGACTGT----ATCATATACAGAAAGATTAGTTTT--CCACATATTT--TTAC 315
consensus_8801#3 T-----AAGACTGT----ATCATATACAGAAAGATTAGTTTT--CCACATATTT--TTAC 309
consensus_8801#1 ATCCTAAAGACCTTGAGAAGCTTGTATGTATAATCTAGTTGGGGCGACGTAGCAGGTAAG 340
consensus_8801#4 TT----ACCGCCTG----AACTAATACCAAGTTCCCCTCCATTTCTAC-CATCCTTGTGT 279
* * * * ** * * ** *
consensus_8801#0 AAGAGAAAGTTACTTT----GGATGTAGTGAGTAATTTATT-ACTACAAAAG--AGTTTG 563
consensus_8801#2 AAGAGAAAGTTACTTT----GGGTGTAGTGAGTAATTTATT-ACTACAGAAG--AGTTTG 368
consensus_8801#3 AAGAGAAAGTTACTTT----GGGTGTAGTGAGTAATTTATT-ACTACAAAAG--AGTTTG 362
consensus_8801#1 AATGGTAAACAGATTTTCCGAAATGCAG-GAGAAATGAATG-ACCAAAAAATGTAGCATG 398
consensus_8801#4 GCTTGGATGTTCTTCT---GCATTATATCAAGCTTTTCATTTACAACGGAATATAG--TG 334
* * * * * * ** * ** ** * ** ** **
consensus_8801#0 ATACGTGAATACCAAACAAGCGGACGATTTAACTCTACACCATGAGCAG-AAGTGATT-T 621
consensus_8801#2 ATACGTGAATACCATACAAGCGGACGATTTAACTCTACACCATGAGCAG-AAGTGATT-T 426
consensus_8801#3 ATACGTGAATACCAAACAAGCGGACGATTTAACTCTACACCATGAGCAG-AAATGATT-T 420
consensus_8801#1 AAGTAACAGTCGTAATCCCGNNNNNNNNNNNNNNNNNNNNNNNAAGTAGTGGATGTCTAT 458
consensus_8801#4 TTATTTAAATGA-ATACAGATGCTCCATTGGAGTCGATAATCGGACATTCTAGTATTCAC 393
* * * * * *
consensus_8801#0 TTAATGTTGGCCGA---CTTAATAAATCAATCA---ACACGCGTCCATCACCACTG--C- 672
consensus_8801#2 TTAGTTTTGGGCGA---CTTAATAAATCAATCA---ACACGCGTCCATCACCACTG--C- 477
consensus_8801#3 TTAATGTTGGCCGA---CTTAATAAATCAATCA---ACTATGATTTAGGAAAAAAA--CA 472
consensus_8801#1 TTGACGTTGAGTGAAAACTAGAATGTCCGATTATAGACTCCAATGGAGCATCTGTATTCA 518
consensus_8801#4 TCAAC------------------------------------------------------- 398
*
consensus_8801#0 CTAAATCAATTATAGATCCTAAAGACTTATCATTNTTTTGACTTTGCG------------ 720
consensus_8801#2 CTAAATCAATTATAGATCCTAAGGACTTATCATTTTTTTGACTT---------------- 521
consensus_8801#3 CCGAAAGAAAAACAAAAGC-AACTAAGCAATAAAAGTACAACATTATATG---------- 521
consensus_8801#1 TTTAAATAACACTATATTC-CGTTGTAAATGAAAAGCTTGATATAGTGCAGGTAAAAATG 577
consensus_8801#4 ------------------------------------------------------------
consensus_8801#0 --------------------------------
consensus_8801#2 --------------------------------
consensus_8801#3 --------------------------------
consensus_8801#1 GAGGGGAACTTGGTATTAGTTCAGGCGGTAAC 609
consensus_8801#4 --------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||