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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8803#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 934 fasta sequence
[CCTCGCGGCCAAAAATTCGGCACGAGGCTTGCATCGACACAAAAAGTTAGTAAAGCAGCTCGTCGTCGTGAAAAACGGGCTGCTCTTCAACATGCTCAACAGACAGCTGCCCTAAGGAATATACAAGCAGATAGATCTGATAGTCTTCGATCTGTTGAAATGAAAAGGTTAGAAAAGGAACTTTCAGCCCGTCACCTATGTTTATTTGAAGTTCCTTCAGATGGAGATTGCCTTTATCAGTCAATTGGGCATCAATTAAAAATTCGAAATTATCCATTACACGAATTACTAGGAAAGATTGAAATGTCTAATCCAGAAAATCTTAATGATATTAATACCGATCAGACAATGAAACAAGTGGTGAAAATTTTGCGTCATCTTGCATCGTATCACATTCGCAAGAATATGAATGATTTCCTACCATTTTTGTTCAACCCAGATTCTGGAGAACCAATGAGTATAGCTAATTTTGAACAATATTGTGACAATATAGAAAAAACATCAACGT-GG-GGTGGACAAATTGAAATCCGTGCCTTATCTACAATGCTTCAACTTCCTATTGAAATATTACAAGCTG-AAGGAGTCTCATTAATCAT-TGGGGAAGAGTTTTCTGAACAGCCACCAATCACTATTGTATACCACCGTTATGCGTTCGCACTCGGTGAACACTACAATTCCTGTCTAAAGAAACAAGGATTTCAA-TG-ATTCCTAAAAG-AAAAAGGAATTCCATGTAAATAGTAATCACTAAACCATTGTGTATATTATAACTGTGCTTATATTA-ATATTTGATCAATATTAGGACTCATTTTTTAAAGGTAAAGCGACTCTAAAATGTAATGTAGTTTCAATAGGCTTCAAAATCTGTTGTATTCAGTGATAACTATCTTTACTGGAATAAAATACAATACTGTGGATTTCACTATAAAAAATGCTA]
[+] EMBL CD080192 [CCTCGCGGCCAAAAATTCGGCACGAGGCTTGCATCGACACAAAAAGTTAGTAAAGCAGCTCGTCGTCGTGAAAAACGGGCTGCTCTTCAACATGCTCAACAGACAGCTGCCCTAAGGAATATACAAGCAGATAGATCTGATAGTCTTCGATCTGTTGAAATGAAAAGGTTAGAAAAGGAACTTTCAGCCCGTCACCTATGTTTATTTGAAGTTCCTTCAGATGGAGATTGCCTTTATCAGTCAATTGGGCATCAATTAAAAATTCGAAATTATCCATTACACGAATTACTAGGAAAGATTGAAATGTCTAATCCAGAAAATCTTAATGATATTAATACCGATCAGACAATGAAACAAGTGGTGAAAATTTTGCGTCATCTTGCATCGTATCACATTCGCAAGAATATGAATGATTTCCTACCATTTTTGTTCAACCCAGATTCTGGAGAACCAATGAGTATAGCTAATTTTGAACAATATTGTGACAATATAGAAAAAACATCAACGTNGG GGTGGACAAATTGAAATCCGTGCCTTATCTACAATGCTTCAACTTCCTATTGAAATATTACAAGCTG AAGGAGTCTCATTAATCATNTGGGGAAGAGTTTTCTGAACAGCCACCAATCACTATTGTATACCACCGTTATGCGTTCGCACTCGGTGAACACTACAATTCCTGTCTAAAGAAACAAGGATTTCAA TG ATTCCTANAAG AAAAGGAATTCCATGTAAATAGTAATCACTANACCATTGTGTATATTATAACTGTGCTTATATTANATATTTGATC ATATTANGACTCATTTTTTAAGGGT AAGCGACTCT AAATGTTATGTAGTTTC ATAGGC TCCAAATCTGTTGGATTC NTGAT ACTATC TTACTGG AT AAAT C ATACTGT ]
[-] EMBL CD073112 [ tAGACAATGAAACAAGTGGTGAAAATTNTGCGTCATCTTGCATCGTATCACATTCGCAAGAATATGAATGATTTCCTACCATTTTTGTTCAACCCAGATTCTGGAGAACCAATGAGTATAGCTAATTTTGAACAATATTGTGACAATATAGAAAAAACATCAACGT GG GGTGGACAAATTGAAATCCGTGCCTTATCTACAATGCTTCAACTTCCTATTGAAATATTACAAGCTG AAGGAGTCTCATTAATCAT TGGGGAAGAGTTTTTTGAACAGCCACCAATCACTATTGTATACCCCCGTTATGCGTTCGCACTCGGTGAACACTACAATTCCTGTCTAAAGAAACAAGGATTTCAA TG ATTCCTAAAAG AAAAAGGAATTCCATGTAAATAGTAATCACTAAACCATTGTGTATATTATAACTGTGCTTATATTA ATATTTGATCAATATTAGGACTCATTTTTTAAAGGTAAAGCGACTCTAAAATGTAATGTAGTTTCAATAGGCTTCAAAATCTGTTGTATTCAGTGATAACTATCTTTACTGGAATAAAATACAATACTGTGGA ]
[+] EMBL CD083530 [ GCTAATTTTGAACTATATTGTCACAATATTGAAAAAACATCAACGT GG GGTGGACAAATTGAAATCCGTGCCTTATCTACAATGCTTCAACTTCCTATTGAAATATTACAAGCTG AAGGAGTCTCATTAATCAT TGGGGAAGAGCTTTCTGAACAGCCACCAATCACTATTGTATACCACCGTTATGCGTTCGCACTCGGTGAACACTACAATTCCTGTCTAAAGAAACAAGGATTTCAA TG ATTCCTAAAAG AAAAAGGAATTCCATGTAAATAGTAATCACTAAACCATTGTGTATATTATAACTGTGCTTATATTA ATATTTGATCAATATTAGGACTCATTTTTTAAAGGTAAAGCGACTCTNAAATGTAATGTAGTTTCAATAGGCTTCAAAATCTGTTGTATTCAGTGATAACTATCTTTACTGGAATAAAATACAATACTGTGG ]
[+] EMBL CD083614 [ TCAACGT GGAGGTGGACAAATTGAAATCCGTGCCTTATCTACAATGCTTCAACTTCCTATTGAAATATTACAAGCTGTAAGGAGTCTCATTAATCAT TGGGGAAGAGCTTTCTGAACAGCCACCAATCACTATTGTATACCACCGTTATGCGTTCGCACTCGGTGAACACTACAATTCCTGTCTAAAGAAACAAGGATTGCAATTGTATTCCTAAAAGTAAAAAGGAATTCCATGTTAATAGTAATCACTAAACCATTGTGTATATTATAACTGTGCTTATATTA ATATTTGATCAATATTAGGACTCATTTTTTAAAGGTAAAGCGACTCTAAAATGTAATGTAGTTTCAATAGGCTTCAAAATCTGTTGTATTCAGTGATCACTATCTTTACTGGAATAAAATACAATACTGTGGATTTCACTATAAAAAATGCTA]
consensusID : consensus_8803#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 692 fasta sequence
[GGCACGAGGCAAATGGCTGCGTTACGTAGGC-TTTCTGTTAATTTCCCCCAAATTATCGAC-----TTATCATCTAGATTGATTTTCAAATGACAAAACGTGGAGCTATTCAAGTCTGTTTGTTAAGTTGAAGCTGTTTGCGAAGAATTCTGTCCCTTGTGTTCAGTGAGGAAAAAGATATCTTTGGAGAATATGGATAATACTTGCACTCAGGATAAACTTGCATCGACACAAAAAGTTAGTAAAGCAGCTCGTCGTCGTGAAAAACGGGCTGCTCTTCAACATGCTCAACAGACAGCTGCCCTAAGGAATATACAAGCAGATAGATCTGATAGTCTTCGATCTGTTGAAATGAAAAGGTTAGAAAAGGAACTTTCAGCCCGTCACCTATGTTTATTTGAAGTTCCTTCAGATGGAGATTGCCTTTATCAGTCAATTGGGCATCAATTAAAAATTCGAAATTATCCATTACACGAATTACTAGGAAAGATTGAAATGTCTAATCCAGAAAATCTTAATGATATTAATACCGATCAGACAATGAAACAAGTGGTGAAAATTTTGCGTCATCTTGCATCGTATCACATTCGCAAGAATATGAATGATTTCCTACCATTTTTGTTCAACCCAGATTCTGGAGAACCAATGAGTATAGCTAATTTTGAACAATATTGTGACAATATAGAAAAAACATCAAC]
[+] EMBL CD083578 [GGCACGAGGCAAATGGCTGCGTTACGTAGGC TTTCTGTTAATTTCCCCCAAATTATCGAC TTATCATCTAGATTGATTTTCAAATGACAAAACGTGGAGCTATTCAAGTCTGTTTGTTAAGTTGAAGCTGTTTGCGAAGAATTCTGTCCCTTGTGTTCAGTGAGGAAAAAGATATCTTTGGAGAATATGGATAATACTTGCACTCAGGATAAACTTGCATCGACACAAAAAGTTAGTAAAGCAGCTCGTCGTCGTGAAAAACGGGCTGCTCTTCAACATGCTCAACAGACAGCTGCCCTAAGGAATATACAAGCAGATAGATCTGATAGTCTTCGATCTGTTGAAATGAAAAGGTTAGAAAAGGAACTTTCAGCCCGTCACCTATGTTTATTTGAAGTTCCTTCAGATGGAGATTGCCTTTATCAGTCAATTGGGCATCAATTAAAAATTCGAAATTATCCATTACACGAATTACTAGGAAAGATTGAAATGTCTAATCCAGAAAATCTTAATGATATTAATACCGATCAG ]
[+] EMBL AW017255 [ TACGTAGGCTTTTCTGTTAATTTCCCCCAAATTATCGACGTAAGTTATCATCTAGATTGATTTTCAAATGACAAAACGTGGAGCTATTCAAGTCTGTTTGTTAAGTTGAAGCTGTTTGCGAAGAATTCTGTCCCTTGTGTTCAGTGAGGAAAAAGATATCTTTGGAGAATATGGATAATACTTGCACTCAGGATAAACTTGCATCGACACAAAAAGTTAGTAAAGCAGCTCGTCGTCGTGAAAAACGGGCTGCTCTTCAACATGCTCAACAGACAGCTGCCCTAAGGAATATACAAGCAGATAGATCTGATAGTCTTCGATCTGTTGAAATGAAAAGGTTAGAAAAGGAACTTTCAGCCCGTCACCTATGTTTATTTGAAGTTCCTTCAGATGGAGATTGCCTTTATCAGTCAATTGGGCATCAATTAAAAATTCGAAATTATCCATTACACGAATTACTAGGAAAGATTGAAATGTCTAATCCAGAAAATCTTAATGATATTAATACCGATCAGACAATGAAACAAGTGGTGAAAATTTTGCGTCATCTTGCATCGTATCACATTCGCAAGAATATGAATGA ]
[+] EMBL CD078648 [ CAAGTCTGTTTGTTAAGTTGAAGCTGTTTGCGAAGAATTCTGTCCCTTGTGTTCAGTGAGGAAAAAGATATCTTTGGAGAATATGGATAATACTTGCACTCAGGATAAACTTGCATCGACACAAAAAGTTAGTAAAGCAGCTCGTCGTCGTGAAAAACGGGCTGCTCTTCAACATGCTCAACAGACAGCTGCCCTAAGGAATATACAAGCAGATAGATCTGATAGTCTTCGATCTGTTGAAATGAAAAGGTTAGAAAAGGAACTTTCAGCCCGTCACCTATGTTTATTTGAAGTTCCTTCAGATGGAGATTGCCTTTATCAGTCAATTGGGCATCAATTAAAAATTCGAAATTATCCATTACACGAATTACTAGGAAAGATTGAAATGTCTAATCCAGAAAATCTTAATGATATTAATACCGATTAGACAATGAAACAAGTGGTGAAAATTTTGCGTCATCTTGCATCGTATCACATTCGCAAGAATATGAATGATTTCCTACCATTTTTGTTCAACCCAGATTCTGGAGAACCAATGAGTATAGCTAATTTTGAACAATATTGTGACAATATAGAAAAAACATCAAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8803#0 ------------------------------------------------------------
consensus_8803#1 GGCACGAGGCAAATGGCTGCGTTACGTAGGCTTTCTGTTAATTTCCCCCAAATTATCGAC 60
consensus_8803#0 ------------------------------------------------------------
consensus_8803#1 TTATCATCTAGATTGATTTTCAAATGACAAAACGTGGAGCTATTCAAGTCTGTTTGTTAA 120
consensus_8803#0 ------------------------------------------------------------
consensus_8803#1 GTTGAAGCTGTTTGCGAAGAATTCTGTCCCTTGTGTTCAGTGAGGAAAAAGATATCTTTG 180
consensus_8803#0 --CCTCGCGGCCAAAAATTCGGCACGAGG----CTTGCATCGACACAAAAAGTTAGTAAA 54
consensus_8803#1 GAGAATATGGATAATACTTGCACTCAGGATAAACTTGCATCGACACAAAAAGTTAGTAAA 240
** ** * ** * * * ***************************
consensus_8803#0 GCAGCTCGTCGTCGTGAAAAACGGGCTGCTCTTCAACATGCTCAACAGACAGCTGCCCTA 114
consensus_8803#1 GCAGCTCGTCGTCGTGAAAAACGGGCTGCTCTTCAACATGCTCAACAGACAGCTGCCCTA 300
************************************************************
consensus_8803#0 AGGAATATACAAGCAGATAGATCTGATAGTCTTCGATCTGTTGAAATGAAAAGGTTAGAA 174
consensus_8803#1 AGGAATATACAAGCAGATAGATCTGATAGTCTTCGATCTGTTGAAATGAAAAGGTTAGAA 360
************************************************************
consensus_8803#0 AAGGAACTTTCAGCCCGTCACCTATGTTTATTTGAAGTTCCTTCAGATGGAGATTGCCTT 234
consensus_8803#1 AAGGAACTTTCAGCCCGTCACCTATGTTTATTTGAAGTTCCTTCAGATGGAGATTGCCTT 420
************************************************************
consensus_8803#0 TATCAGTCAATTGGGCATCAATTAAAAATTCGAAATTATCCATTACACGAATTACTAGGA 294
consensus_8803#1 TATCAGTCAATTGGGCATCAATTAAAAATTCGAAATTATCCATTACACGAATTACTAGGA 480
************************************************************
consensus_8803#0 AAGATTGAAATGTCTAATCCAGAAAATCTTAATGATATTAATACCGATCAGACAATGAAA 354
consensus_8803#1 AAGATTGAAATGTCTAATCCAGAAAATCTTAATGATATTAATACCGATCAGACAATGAAA 540
************************************************************
consensus_8803#0 CAAGTGGTGAAAATTTTGCGTCATCTTGCATCGTATCACATTCGCAAGAATATGAATGAT 414
consensus_8803#1 CAAGTGGTGAAAATTTTGCGTCATCTTGCATCGTATCACATTCGCAAGAATATGAATGAT 600
************************************************************
consensus_8803#0 TTCCTACCATTTTTGTTCAACCCAGATTCTGGAGAACCAATGAGTATAGCTAATTTTGAA 474
consensus_8803#1 TTCCTACCATTTTTGTTCAACCCAGATTCTGGAGAACCAATGAGTATAGCTAATTTTGAA 660
************************************************************
consensus_8803#0 CAATATTGTGACAATATAGAAAAAACATCAACGTGGGGTGGACAAATTGAAATCCGTGCC 534
consensus_8803#1 CAATATTGTGACAATATAGAAAAAACATCAAC---------------------------- 692
********************************
consensus_8803#0 TTATCTACAATGCTTCAACTTCCTATTGAAATATTACAAGCTGAAGGAGTCTCATTAATC 594
consensus_8803#1 ------------------------------------------------------------
consensus_8803#0 ATTGGGGAAGAGTTTTCTGAACAGCCACCAATCACTATTGTATACCACCGTTATGCGTTC 654
consensus_8803#1 ------------------------------------------------------------
consensus_8803#0 GCACTCGGTGAACACTACAATTCCTGTCTAAAGAAACAAGGATTTCAATGATTCCTAAAA 714
consensus_8803#1 ------------------------------------------------------------
consensus_8803#0 GAAAAAGGAATTCCATGTAAATAGTAATCACTAAACCATTGTGTATATTATAACTGTGCT 774
consensus_8803#1 ------------------------------------------------------------
consensus_8803#0 TATATTAATATTTGATCAATATTAGGACTCATTTTTTAAAGGTAAAGCGACTCTAAAATG 834
consensus_8803#1 ------------------------------------------------------------
consensus_8803#0 TAATGTAGTTTCAATAGGCTTCAAAATCTGTTGTATTCAGTGATAACTATCTTTACTGGA 894
consensus_8803#1 ------------------------------------------------------------
consensus_8803#0 ATAAAATACAATACTGTGGATTTCACTATAAAAAATGCTA 934
consensus_8803#1 ----------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||