cluster # 8812

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Schistosoma mansoni
cluster # 8812 cluster # 8812 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8812#0 length = 772 sequences # 3

consensus_8812#1 length = 445 sequences # 4

consensusID : consensus_8812#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 772
fasta sequence

                              [ATCCGGGTCTACCTCTTTATGTGTGTCCGTGGTGTCGATCGGAGTCCAGCACAGTCTGCGTTGGTTTTAATGCTTCAAGTCTCGCATGGCGACATCTGCTCAGTGAGCATTCAAGTGAGATTATGAAGCCAGAAACACTGAGTCGAATCGGTCGAGTATCTGAAAAATCGCTTTCGGAGCGTGATGTCACTCGTCTTTTGGGTATATATTGTCCAGAAATCGATTCAACCCAACCACCAGAGAACATTGCTGTTAGGCAACCATCTGTTACCAGCCGCCGTAAAAACCAAAAGATAGAAACTCTCGGTAGACCACATCTTTCTGGAGAAAATGAATTAGCGATTATAGAAGCCAAAGAGTCGAATTCAGCGGAAAATATAAACCCCGTTGAGGAGGATAAGATTGGATCTTCCCCAATCCCTTTAAATAATCAGAAAAATGACGCTAATGATGATCTATTATTTTACAATCTCATCCAAATTGGTTCAGGGGCGATTTGGTCACGTAATACGACACAGTATATTGTAAATAATTTATAATATGGAATTTAAATGATTTCATAGTTTTTTTTTATTTTTCTCACTGGACCAGACTTATATGTAATATCAATCGTGCTCGATACATTCTGTGTAGTTTATACTAACTCTGTAATCCTACTTTACGACGTACGCAACAAGTCACAACTCATAAAAAAATTGGTTATATATGAACATTTGGATATCATCTAAACTGAAATATACTANGTTTTTACCAAGTAATTCATAAGCTGAAT]

[-] EMBL BG932440             [ATCCGGGTCTACCTCTTTATGTGTGTCCGTGGTGTCGATCGGAGTCCAGCACAGTCTGCGTTGGTTTTAATGCTTCAAGTCTCGCATGGCGACATCTGCTCAGTGAGCATTCAAGTGAGATTATGAAGCCAGAAACACTGAGTCGAATCGGTCGAGTATCTGAAAAATCGCTTTCGGAGCGTGATGTCACTCGTCTTTTGGGTATATATTGTCCAGAAATCGATTCAACCCAACCACCAGAGAACATTGCTGTTAGGCAACCATCTGTTACCtc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL AI067548             [                                                                                                                                 CAGAAACACTGAGTCGAATCGGTCGAGTATCTGAAAAATCGCTTTCGGAGCGTGATGTCACTCGTCTTTTGGGTATATATTGTCCAGAAATCGATTCAACCCAACCACCAGAGAACATTGCTGTTAGGCAACCATCTGTTACCAGCCGCCGTAAAAACCAAAAGATAGAAACTCTCGGTAGACCACATCTTTCTGGAGAAAATGAATTAGCGATTATAGAAGCCAAAGAGTCGAATTCAGCGGAAAATATAAACCCCGTTGAGGAGGATAAGATTGGATCTTCCCCAATCCCTTTAAATAATCAGAAAAATGACGCTAATGATGATCTATTATTTTACAATCTCATCCAAATTGGTTCAGGGGCGATTTGGTCACGTAATACGACACA                                                                                                                                                                                                                                                               ]
[+] EMBL CD160517             [                                                                                                                                                                                     ggaagacgaTCGTCTTTTGGGTATATATTGTCCAGAAATCGATTCAACCCAACCACCAGAGAACATTGCTGTTAGGCAACCATCTGTTACCAGCCGCCGTAAAAACCAAAAGATAGAAACTCTCGGTAGACCACATCTTTCTGGAGAAAATGAATTAGCGATTATAGAAGCCAAAGAGTCGAATCCAGCGGAAAATATAAACCCCGTTGAGGAGGATAAGATTGGATCTTCCCCAATCCCTTTAAATAATCAGAAAAATGACGCTAATGATGATCTATTATTTTACAATCTCATCCAAATTGGTTCAGGGGCGATTTGGTCACGTAATACGACACAGTATATTGTAAATAATTTATAATATGGAATTTAAATGATTTCATAGTTTTTTTTTATTTTTCTCACTGGACCAGACTTATATGTAATATCAATCGTGCTCGATACATTCTGTGTAGTTTATACTAACTCTGTAATCCTACTTTACGACGTACGCAACAAGTCACAACTCATAAAAAAATTGGTTATATATGAACATTTGGATATCATCTAAACTGAAATATACTANGTTTTTACCAAGTAATTCATAAGCTGAAT]




>consensus_8812#0
ATCCGGGTCTACCTCTTTATGTGTGTCCGTGGTGTCGATCGGAGTCCAGCACAGTCTGCG
TTGGTTTTAATGCTTCAAGTCTCGCATGGCGACATCTGCTCAGTGAGCATTCAAGTGAGA
TTATGAAGCCAGAAACACTGAGTCGAATCGGTCGAGTATCTGAAAAATCGCTTTCGGAGC
GTGATGTCACTCGTCTTTTGGGTATATATTGTCCAGAAATCGATTCAACCCAACCACCAG
AGAACATTGCTGTTAGGCAACCATCTGTTACCAGCCGCCGTAAAAACCAAAAGATAGAAA
CTCTCGGTAGACCACATCTTTCTGGAGAAAATGAATTAGCGATTATAGAAGCCAAAGAGT
CGAATTCAGCGGAAAATATAAACCCCGTTGAGGAGGATAAGATTGGATCTTCCCCAATCC
CTTTAAATAATCAGAAAAATGACGCTAATGATGATCTATTATTTTACAATCTCATCCAAA
TTGGTTCAGGGGCGATTTGGTCACGTAATACGACACAGTATATTGTAAATAATTTATAAT
ATGGAATTTAAATGATTTCATAGTTTTTTTTTATTTTTCTCACTGGACCAGACTTATATG
TAATATCAATCGTGCTCGATACATTCTGTGTAGTTTATACTAACTCTGTAATCCTACTTT
ACGACGTACGCAACAAGTCACAACTCATAAAAAAATTGGTTATATATGAACATTTGGATA
TCATCTAAACTGAAATATACTANGTTTTTACCAAGTAATTCATAAGCTGAAT

consensusID : consensus_8812#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 445
fasta sequence

                              [AGAAACACTGAGTCGAATCGGTCGAGTATCTGAAAATCGCTTTCGGAGCGTGA-TGCCACTCGTCTTTTGGGTATATATTGTCCAGAAATCGATTCAACCCAACCACCAGAGAACATTGCTGTTAGGCAACCATCTGTTACCAGCCGCCGTAAAAACCAAAAGATAGAAACTCTCGGTAGACCACATCTTTCTGGAGAAAATGAATTAGCGATTATAGAAGCCAAAGAGTCGAATTCAGCGGAAAATATAAACCCCGTTGAGGAGGATAAGATTGGATCTTCCCCAATCCCTTTAAATAATCAGAAAAATGACGCTAATGATGATCTATTATTTTACAATCTCATCCAAATTGGTTCAGGGGCGATTTGGTCACGTAATACGACACAGTATATTGTAAATAATTTATAATATGGAATTTAAATGATTTCAAAAAATAAAAAAAAAA]

[-] EMBL AI394868             [AGAAACACTGAGTCGAATCGGTCGAGTATCTGAAAATCGCTTTCGGAGCGTGA TGCCACTCGTCTTTTGGGTATATATTGTCCAGAAATCGATTCAACCCAACCACCAGAGAACATTGCTGTTAGGCAACCATCTGTTACCAGCCGCCGTAAAAACCAAAAGATAGAAACTCTCGGTAGACCACATCTTTCTGGAGAAAATGAATTAGCGATTATAGAAGCCAAAGAGTCGAATTCAGCGGAAAATATAAACCCCGTTGAGGAGGATAAGATTGGATCTTCCCCAATCCCTTTAAATAATCAGAAAAATGACGCTAATGATGATCTATTATTTTACAATCTCATCCAAATTGGTTCAGGGGCGATTTGGTCACGTAATACGACACAGTATATTGTAAATAATTTATAATATGGAATTTAAATGATTTCAAAAAATAAAAAAAAA ]
[-] EMBL AI395621             [            TCGAATCGTCCGAGTATTTGAAAATCGCTTTCGGAGCGTGATTGTCACTCGTCTTTTGGGTATATATTGTCCAGAAATCGATTCAACCCACCCACCAGAGAAC TTGCTGTTAGGCAACCATCTGTTACCAGCCGCCGTAAAAACCAAAAGATAGAAACTCTCGGTAGACCACATCTTTCTGGAGAAAATGAATTAGCGATTATAGAAGCCAAAGAGTCGAATTCAGCGGAAAATATAAACCCCGTTGAGGAGGATAAGATTGGATCTTCCCCAATCCCTTTAAATAATCAGAAAAATGACGCTAATGATGATCTATTATTTTACAATCTCATCCAAATTGGTTCAGGGGCGATTTGGTCACGTAATACGACACAGTATATTGTAAATAATTTATAATATGGAATTTAAATGATTTCAAAAAAAAAAAAAAAAA]
[-] EMBL AI977462             [                                                            TCGTCTTTTGGGTATATATTGTCCAGAAATAGATTCAACCCAACCACCAGAGAACATTGCTGTTAGGCAACCATTTGTTACCAGCCGCCGTAAAAACCAAAAGATAGAAACTCTCGGTAGACCGCATCTTTCTGGAGAAAATGAATTAGCGATTATAAAAGCCAAAGAGTCGAATTCAGCGGAAAATATAAACCCCGTTTAGGAGGATAAGATTGGATCTTCCCCAATCCCTTTAAATAATCAGAAAAATGACGCTAATGATGATCTATTATTTGACAATCTCATCCAAATTGGTTCAGGGGCGATTTGGTCACGTAATACGACACAGTATATTGTAAATAATTTATAATATGGA                               ]
[-] EMBL AI977692             [                                                                                                                                                                                                           AATTAGCGATTATAGAAGCCAAAGAGTGGAATTCAGCGGAAAATATAAACCCCGTTGAGGAGGATAAGATTGGATTTTCCCCAATCCCTTTAAATAATCAGAAAAATGACGCTAATGATGATCTATTATTTTACAATTTCATCCAAATTGGTTCAGGGGCGATTTGGTCACGTAATCCGACACAGGATATTGTAAATAATTTATAATAGGGA                               ]




>consensus_8812#1
AGAAACACTGAGTCGAATCGGTCGAGTATCTGAAAATCGCTTTCGGAGCGTGATGCCACT
CGTCTTTTGGGTATATATTGTCCAGAAATCGATTCAACCCAACCACCAGAGAACATTGCT
GTTAGGCAACCATCTGTTACCAGCCGCCGTAAAAACCAAAAGATAGAAACTCTCGGTAGA
CCACATCTTTCTGGAGAAAATGAATTAGCGATTATAGAAGCCAAAGAGTCGAATTCAGCG
GAAAATATAAACCCCGTTGAGGAGGATAAGATTGGATCTTCCCCAATCCCTTTAAATAAT
CAGAAAAATGACGCTAATGATGATCTATTATTTTACAATCTCATCCAAATTGGTTCAGGG
GCGATTTGGTCACGTAATACGACACAGTATATTGTAAATAATTTATAATATGGAATTTAA
ATGATTTCAAAAAATAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8812#0      ATCCGGGTCTACCTCTTTATGTGTGTCCGTGGTGTCGATCGGAGTCCAGCACAGTCTGCG 60
consensus_8812#1      ------------------------------------------------------------
                                                                                  

consensus_8812#0      TTGGTTTTAATGCTTCAAGTCTCGCATGGCGACATCTGCTCAGTGAGCATTCAAGTGAGA 120
consensus_8812#1      ------------------------------------------------------------
                                                                                  

consensus_8812#0      TTATGAAGCCAGAAACACTGAGTCGAATCGGTCGAGTATCTGAAAAATCGCTTTCGGAGC 180
consensus_8812#1      ----------AGAAACACTGAGTCGAATCGGTCGAGTATCTGAAAA-TCGCTTTCGGAGC 49
                                ************************************ *************

consensus_8812#0      GTGATGTCACTCGTCTTTTGGGTATATATTGTCCAGAAATCGATTCAACCCAACCACCAG 240
consensus_8812#1      GTGATGCCACTCGTCTTTTGGGTATATATTGTCCAGAAATCGATTCAACCCAACCACCAG 109
                      ****** *****************************************************

consensus_8812#0      AGAACATTGCTGTTAGGCAACCATCTGTTACCAGCCGCCGTAAAAACCAAAAGATAGAAA 300
consensus_8812#1      AGAACATTGCTGTTAGGCAACCATCTGTTACCAGCCGCCGTAAAAACCAAAAGATAGAAA 169
                      ************************************************************

consensus_8812#0      CTCTCGGTAGACCACATCTTTCTGGAGAAAATGAATTAGCGATTATAGAAGCCAAAGAGT 360
consensus_8812#1      CTCTCGGTAGACCACATCTTTCTGGAGAAAATGAATTAGCGATTATAGAAGCCAAAGAGT 229
                      ************************************************************

consensus_8812#0      CGAATTCAGCGGAAAATATAAACCCCGTTGAGGAGGATAAGATTGGATCTTCCCCAATCC 420
consensus_8812#1      CGAATTCAGCGGAAAATATAAACCCCGTTGAGGAGGATAAGATTGGATCTTCCCCAATCC 289
                      ************************************************************

consensus_8812#0      CTTTAAATAATCAGAAAAATGACGCTAATGATGATCTATTATTTTACAATCTCATCCAAA 480
consensus_8812#1      CTTTAAATAATCAGAAAAATGACGCTAATGATGATCTATTATTTTACAATCTCATCCAAA 349
                      ************************************************************

consensus_8812#0      TTGGTTCAGGGGCGATTTGGTCACGTAATACGACACAGTATATTGTAAATAATTTATAAT 540
consensus_8812#1      TTGGTTCAGGGGCGATTTGGTCACGTAATACGACACAGTATATTGTAAATAATTTATAAT 409
                      ************************************************************

consensus_8812#0      ATGGAATTTAAATGATTTCATAGTTTTTTTTTATTTTTCTCACTGGACCAGACTTATATG 600
consensus_8812#1      ATGGAATTTAAATGATTTCAAAAAATAAAAAAAAAA------------------------ 445
                      ******************** *   *      *                           

consensus_8812#0      TAATATCAATCGTGCTCGATACATTCTGTGTAGTTTATACTAACTCTGTAATCCTACTTT 660
consensus_8812#1      ------------------------------------------------------------
                                                                                  

consensus_8812#0      ACGACGTACGCAACAAGTCACAACTCATAAAAAAATTGGTTATATATGAACATTTGGATA 720
consensus_8812#1      ------------------------------------------------------------
                                                                                  

consensus_8812#0      TCATCTAAACTGAAATATACTANGTTTTTACCAAGTAATTCATAAGCTGAAT 772
consensus_8812#1      ----------------------------------------------------