These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8824#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 656 fasta sequence [AAAAAGGGTAGAAGGAAAGAGATAGAGACCCGCCGCACATACACACACACACACGTGTATTATGAATATTATACAGTAACTATGCGTAAACACAATGACAACACTACCAATAATAATGATCATCCTAGTTTGAAC-ATGTACATACACACACATGTAGGGAATAAGTGATGTCATTCTACCATAGTTTACTTATAGAGAAGCAAAGAGACAAAAAAAATTAAAGGAGTAGAAATCATCAGAATCAGAAGGCAAATTAACAATTTGTCAATAAACAAACAAACAAACAAACAAATACACACACATACATATACACGCAACATGGATACTGGGAACTATGAAAGAAACAATACTTCTTTTAATTAGATCAGTTTGTTTTGTAACTAAGGCAATTATGAAAAT--AGAGAGAGAGAGAGAGAGAGAGAAAGAGAGGCNAAAGAGAGTAACAGTGTGATACTTTGGTAATAAAGTAAGTGAGGAATGATATACACATGCATAATTAACAAAAACTACAAGAATTTTACATTCTCATCATTAATAATAATAATCATTACCAACATCCATAAA-GGCAGTAATATTCGTAGGCAATGGTATTGAACAAAGTGGCCAAAG-AAAGTAAACAAAAGAAACCATATCAGAAATCACCCTACCCTACTTNG] [+] EMBL CD189460 [AAAAAGGGTAGAAGGAAAGAGATAGAGACCCGCCGCACATACACACACACACACGTGTATTATGAATATTATACAGTAACTATGCGTAAACACAATGACAACACTACCAATAATAATGATCATCCTAGTTTGAAC ATGTACATACACACACATGTAGGGAATAAGTGATGTCATTCTACCATAGTTTACTTATAGAGAAGCAAAGAGACAAAAAAAATTAAAGGAGTAGAAATCATCAGAATCAGAAGGCAAATTAACAATTTGTCAATAAACAAACAAACAAACAAACAAATACACACACATACATATACACGCAACATGGATACTGGGAACTATGAAAGAAACAATACTTCTTTTAATTAGATCAGTTTGTTTTGTAACTAAGGCAATTATGAAAAT AGAGAGAGAGAGAGAGAGAGAGAAAGAGAGGCNAAAGAGAGTAACAGTGTGATACTGTGGTAATAAAGTAAGTGAGGAATGATATACACATGCATAATTAACAAAAACTACAAGAATTTTACATTCTCATCATTAATAATAATAATCATTACCAACATCCATAAAGGGCAGT ATATTCGTACGCAATGGTATTGAACAAAGTGGCCAAAGAAAAGT AACAAAAGACACCATATCAGAAATCACCCTACCCTACTTNG] [+] EMBL CD189464 [AAAAAGGGTAGAAGGAAAGAGATAGAGACCCGCCGCACATACACACACACACACGTGTATTATGAATATTATACAGTAACTATGCGTAAACACAATGACAACACTACCAATAATAATGATCATCCTAGTTTGAAC ATGTACATACACACACATGTAGGGAATAAGTGATGTCATTCTACCATAGTTTACTTATAGAGAAGCAAAGAGACAAAAAAAATTAAAGGAGTAGAAATCATCAGAATCAGAAGGCAAATTAACAATTTGTCAATAAACAAACAAACAAACAAACAAATACACACACATACATATACACGCAACATGGATACTGGGAACTATGAAAGAAACAATACTTCTTTTAATTAGATCAGTTTGTTTTGTAACTAAGGCAATTATGAAAAT AGAGAGAGAGAGAGAGAGAGAGANAGAGAGGCNAAAGAGAGTAACAGTGTGATACTTTGGTAATAAAGTAAGTGAGGAATGATATACACATGCATAATTAACAAAAACTACAAGAATTTTACATTCTCATCATTAATAATAATAATCATTACCAACATCCATAGA GGCAGTAATATTCGTAGGCAATGGTATTGAACAAAGTGGCCANAG AAAGTAAACAAAAGAAACCATATCAGAAATCACCCTACCCTACcttg] [+] EMBL CD094680 [ ACACACACACGTGTATTATGAATATTATACAGTAACTATGCGTAAACACAATGACAACACTACCAATAATAATGATCATCCTAGTTTGAAC ATGTACATACACACACATGTAGGGAATAAGTGATGTCATTCTACCATAGTTTACTTATAGAGAAGCAAAGAGACAAAAAAAATTAAAGGAGTAGAAATCATCAGAATCAGAAGGCAAATTAACAATTTGTCAATAAACAAACAAACAAACAAACAAATACACACACATACATATACACGCAACATGGATACTGGGAACTATGAAAGAAACAATACTTCTTTTAATTAGATCAGTTTGTTTTGTAACTAAGGCAATTATGAAAATAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGGCAAAAGAGAGTAACAGTGTGATACTTTGGTAATAAAGTAAGTGAGGAATGATATACACATGCATAATTAACAAAAACTACAAGAATTT ] [-] EMBL CD139645 [ ATAATGATCATCCTAG TTGAACAATGTACATACACACACATGTAGGGAATAAGTGATGTCATTCTACCATAGTTTACTTATAGAGAAGCAAAGAGACAAAAAAAATTAAAGGAGTAGAAATCATCAGAATCAGAAGGCAAATTAACAATTTGTCAATAAACAAACAAACAAACAAACAAATACACACACATACATATACACGCAACATGGATACTGGGAACTATGAAAGAAACAATACT ] [+] EMBL CD154213 [ TCAATAAACAAACAAACAAACAAACAAATACACACACATACATATACACGCAACATGGATACTGGGAACTATGAAAGAAACAATACTTCTTTTAATTAGATCAGTTTGTTTTGTAACTAAGGCAATTATGAAAATAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGGCAAAAGAGAGTAACAGTGTGATACTTTGGTAATAAAGTAAGTGAGGAATGATATACACATGCATAATTAACAAAAACTACAAGAATTTTACATTCTCATCATTAAT ] [-] EMBL CD094567 [ GAGAGAGAGAGAGAGGAAGAGAGGCCAAAGAGAGTAACAGTGTGATACTTTGGTAATAAAGTAAGTGAGGAATGTTATACACATGCATAATTAACAAAAACTACAAGAATTTTACATTCTCATCATTAATAATAATAATCATTACCAACATCCATAAA GGCAGTAATATTCGTAGGCAATGGTATTGAACAAAGTGGCCAAAG AAAGTAAACAAAAGAAACCATATCAGAAATCACCCTACCCTA ] consensusID : consensus_8824#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 150 fasta sequence [CCCAGAACCTGAGATAGAGACCCGCCGCACATACACACACACACACGTGTATTATGAATATTATACAGTAACTATGCGTAAACACAATGACAACACTACCAATAATAATGATCATCCTAGTTTGAACATGTACATACACACACACTTGTA] [+] EMBL CD179702 [CCCAGAACCTGAGATAGAGACCCGCCGCACATACACACACACACACGTGTATTATGAATATTATACAGTAACTATGCGTAAACACAATGACAACACTACCAATAATAATGATCATCCTAGTTTGAACATGTACATACACACACACTTGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8824#0 AAAAAGGGTAGAAGGAAAGAGATAGAGACCCGCCGCACATACACACACACACACGTGTAT 60 consensus_8824#1 --------CCCAGAACCTGAGATAGAGACCCGCCGCACATACACACACACACACGTGTAT 52 * ****************************************** consensus_8824#0 TATGAATATTATACAGTAACTATGCGTAAACACAATGACAACACTACCAATAATAATGAT 120 consensus_8824#1 TATGAATATTATACAGTAACTATGCGTAAACACAATGACAACACTACCAATAATAATGAT 112 ************************************************************ consensus_8824#0 CATCCTAGTTTGAACATGTACATACACACACATGTAGGGAATAAGTGATGTCATTCTACC 180 consensus_8824#1 CATCCTAGTTTGAACATGTACATACACACACACTTGTA---------------------- 150 ******************************** * consensus_8824#0 ATAGTTTACTTATAGAGAAGCAAAGAGACAAAAAAAATTAAAGGAGTAGAAATCATCAGA 240 consensus_8824#1 ------------------------------------------------------------ consensus_8824#0 ATCAGAAGGCAAATTAACAATTTGTCAATAAACAAACAAACAAACAAACAAATACACACA 300 consensus_8824#1 ------------------------------------------------------------ consensus_8824#0 CATACATATACACGCAACATGGATACTGGGAACTATGAAAGAAACAATACTTCTTTTAAT 360 consensus_8824#1 ------------------------------------------------------------ consensus_8824#0 TAGATCAGTTTGTTTTGTAACTAAGGCAATTATGAAAATAGAGAGAGAGAGAGAGAGAGA 420 consensus_8824#1 ------------------------------------------------------------ consensus_8824#0 GAAAGAGAGGCNAAAGAGAGTAACAGTGTGATACTTTGGTAATAAAGTAAGTGAGGAATG 480 consensus_8824#1 ------------------------------------------------------------ consensus_8824#0 ATATACACATGCATAATTAACAAAAACTACAAGAATTTTACATTCTCATCATTAATAATA 540 consensus_8824#1 ------------------------------------------------------------ consensus_8824#0 ATAATCATTACCAACATCCATAAAGGCAGTAATATTCGTAGGCAATGGTATTGAACAAAG 600 consensus_8824#1 ------------------------------------------------------------ consensus_8824#0 TGGCCAAAGAAAGTAAACAAAAGAAACCATATCAGAAATCACCCTACCCTACTTNG 656 consensus_8824#1 -------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||