These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8830#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 855 fasta sequence [AAGGTAACGAGTTGGATAATAGTTTCGAAGCGAATGATGAAGAAAATGATGGAAATGATGAACCTAAACCGCTTGCTCAGCGTCTTGGTGTTTCTGAAAAAACAGATATACAGAAGACAGCTACTACGCGTGGACGTGGTAAAGGAAGAACTGTCCC-AG-AAGTCGTCCAAAGCTTCCGAAACCATCTAGTCCAAATAATAGTCCTATTAAACGTAAAAATATGGGTGGAAATGCCAAACGTAAACGGTCTAGTCGTATGCCATGGGAGTCTGGCTCTGACACTGGAGACTCAGCAAGTCATGCCTCTATTGATAGTGATAATGAATACGTTTCCCCAATTTCTGGTGGACCTGCTGTAGATCGTGTACGACGTGAAAAAGCTGCAGCAACAAAATATGTTTTCGATGATGACAGTAGTAGTAATGAGGAAGATAATGAACGAGAGGAGAACTTTAAAGTTGTTGATCATGGACAAGGAAATAAAGAGATTGATATACCGATTGTTTCAGAAATTCAAGACACTAAGTCATCAATCCCATCAAGTAGCAGTGGTGGTGGTGTATCTGTAAAGACTGATTCCGGGTCAACATCTCGTGGTGCTTCTGCTATTGTATCAGGTCGTGGACGTGGTCGTGGTGGCAAAGGACGGCAGTTTTCAGCTCCACCTAAATCACAACCTAGTATCAAATCAATGTTTCCTTCTCAGAAGAAAACCACAGTAAACATTTCAACGGACGATGATTCTAATGATGCCACAAGTACAACTACTCAAAAAGAGCCTAGAGTGATTTCTCGACGTACTGTAACGAATCGTGCTCGATACGTGTTTGATGATGATGAAGATGACGATCTAGC] [-] EMBL CD162971 [AAGGTAACGAGTTGGATAATAGTTTCGAAGCGAATGATGAAGAAAATGATGGAAATGATGAACCTAAACCGCTTGCTCAGCGTCTTGGTGTTTCTGAAAAAACAGATATACAGAAGACAGCTACTACGCGTGGACGTGGTAAAGGAAGAACTGTCCC AGCAAGTCGTCCAAAGCTTCCGAAACCATCTAGTCCAAATAATAGTCCTATTAAACGTAAAAATATGGGTGGAAATGCCAAACGTAAACGGTCTAGTCGTATGCCATGGGAGTCTGGCTCTGACACTGGAGACTCAGCAAGTCATGCCTCTATTGATAGTGATAATGAATACGTTT ] [+] EMBL CD064473 [ GACAGCTACTACGCGTGGACGTGGTACAGGAAGACCTGTCCCAAC AAGTCGTCCAAAGCTTCCGAAACCATCTAGTCCAACTAATAGTCCTATTACACGTAAAAATATGGGTGGAAATGCCAAACGTAAACGGTCTAGTCGTATGCCATGGGAGTCTGGCTCTGACACTGGAGACTCAGCAAGTCATGCCTCTATTGATAGTGATAAT ] [+] EMBL CD154541 [ AGAACTGTCCCAAC AAGTCGTCCAAAGCTTCCGAAACCATCTAGTCCAAATAATAGTCCTATTAAACGTAAAAATATGGGTGGAAATGCCAAACGTAAACGGTCTAGTCGTATGCCATGGGAGTCTGGCTCTGACACTGGAGACTCAGCAAGTCATGCCTCTATTGATAGTGATAATGAATACGTTTCCCCAATTTCTGGTGGACCTGCTGTAGATCGTGTACGACGTGAAAAAGCTGCAGCAACAAAATATGTTTTCGATGATGACAGTAGTAGTAATGAGGAAGATAATGAACGAGAGGAGAACTTTAAAGTTGTTGATCATGGACAAGGAAATAAAGAGATTGATATACCGATTGTTTCAGAAATTCAAGACACTAAGTCATCAATCCCATCAAGTAGCAGTGGTGGTGGTGTATCTGTAAAGACTGATTCCGGGTCAACATCTCGTGGTGCTTCTGCTATTGTATCAGGTCGTGGACGTGGTCGTGGTGGCAAAGGACGGCAGTTTTCAGCTCCACCTAAATCACAACCTAGTATCAAATCAATGTTTCCTTCTCAGAAGAAAA ] [+] EMBL CD082503 [ cgagCC AG AATTCG CCGAGG CCGAAACC TCTAGTCC AATAATAGTCCTATTAAACGTAAAAATATGGGTGGAAATGCCAAACGTAAACGGTCTAGTCGTATGCCATGGGAGTCTGGCTCTGACACTGGAGACTCAGCAAGTCATGCCTCTATTGATAGTGATAATGAATACGTTTCCCCAATTTCTGGTGGACCTGCTGTAGATCGTGTACGACGTGAAAAAGCTGCAGCAACAAAATATGTTTTCGATGATGACAGTAGTAGTAATGAGGAAGATAATGAACGAGAGGAGAACTTTAAAGTTGTTGATCATGGACAAGGAAATAAAGAGATTGATATACCGATTGTTTCAGAAATTCAAGACACTAAGTCATCAATCCCATCAAGTAGCAGTGGTGGTGGTGTATCTGTAAAGACTGATTCCGGGTCAACATCTCGTGGTGCTTCTGCTATTGTATCAGGTCGTGGACGTGGTCGTGGTGGCAAAGGACGGCAGTTTTCAGCTCCACCTAAATCACAACCTAGTATCAAATCAATGTTTCCTTCTCAGAAGAAAACCACAGTAAACATTTCAACGGACGATGATTCTAATGATGCCACAAGTACAACTACTCAAAAAGAGCCTAGAGTGATTTCTCGACGTACTGTAACGAATCGTGCTCGATACGTGTTTGATGATGATGAAGATGACGATCTAGC] [+] EMBL CD144702 [ ATAATGAACGAGAGGAGAACTTTAAAGTTGTTGATCATGGACAAGGAAATAAAGAGATTGATATACCGATTGTTTCAGAAATTCAAGACACTAAGTCATCAATCCCATCAAGTAGCAGTGGTGGTGGTGTATCTGTAAAGACTGATTCCGGGTCAACATCTCGTGGTGCTTCTGCTATTGTATCAGGTCGTGGACGTGGTCGTGGTGGCAAAGGACGGCAGTTTTCAGCTCCACCTAAATCACAACCTAGTATCAAATCAATGTTTCCTTCTCAGAAGAAAACCACAGTAAACATTTCAACGGACGATG ] consensusID : consensus_8830#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 595 fasta sequence [TTCGTATGCTTAAAGAAGCCAATTATGATTCAGATCCTGTTAAGGCATGGAAAGAAAGCATAGACAAAGCAGCTGCTTTACAAGAACAGGAAGAAGCTCGTACAGATGAAGCTGTCTCTCAAACTGAAGCGGTTGAAGCAGGCCAACCTGACTACAATTATATTTTAAATATGCCTTTATGGAGTTTGACGAAAGAGCGTAAAGATGACTTGCTCGCTCAGAGAGATGCTAAGCAAAAAGAATTACTCATTCTAAAAAGTAAATCTCCTTCTGATTTGTGGCGTGAAGACCTTAAGAAATTAGAGGAGGAGTATAAGAAAGTTGAAGCGGAGTTGGCTGCTGATGAACAGGCTGCAATTGAAGCAGCTGATAAAAAATTAAAAATAGCATCGACTACAACAGCTGGTCGTGTTGCTGCTACAAAATCACGTAAATTAGCAATGGAAACAAGACCAGATCCAATGGGTAGACGAATTGTCCCGACAGTAGATGCTGATATAATGAAGAAGGTGGAGGGAAATAAAAAGAAACGAAATAAAACAGAAAATGATCCAAATGAAGGTAACGAGTTGGATAATAGTTTCGAAGCGAATGA] [+] EMBL AI977571 [TTCGTATGCTTAAAGAAGCCAATTATGATTCAGATCCTGTTAAGGCATGGAAAGAAAGCATAGACAAAGCAGCTGCTTTACAAGAACAGGAAGAAGCTCGTACAGATGAAGCTGTCTCTCAAACTGAAGCGGTTGAAGCAGGCCAACCTGACTACAATTATATTTTAAATATGCCTTTATGGAGTTTGACGAAAGAGCGTAAAGATGACTTGCTCGCTCAGAGAGATGCTAAGCAAAAAGAATTACTCATTCTAAAAAGTAAATCTCCTTCTGATTTGTGGCGTGAAGACCTTAAGAAATTAGAGGAGGAGTATAAGAAAGTTGAAGCGGAGTTGGCTGCTGATGAACAGGCTGCAATTGAAGCAGCTGATAAAAAATTAAAAATAGCATCGACTACAACAGCTGGTCGTGTTGCTGCTACAAAATCACGTAAATTAGCAATGGAAACAAGACCAGATCCAATGGGTAGACGAATTGTCCCGACAGTAGATGCTGATATAATGAAGAAGGTGGAGGGAAATAAAAAGAAACGAAATAAAACAGAAAATGA ] [+] EMBL CD070022 [ AAAAGTAAATCTCCTTCTGA TTGTGGCGTGAAGACCTTAAGAAATTAGAGGAGGAGTATAAGAAAGTTGAAGCGGAGTTGGCTGCTGATGAACAGGCTGCAATTGAAGCAGCTGATAAAAAATTAAAAATAGCATCGACTACAACAGCTGGTCGTGTTGCTGCTACAAAATCACGTAAATTAGCAATGGAAACAAGACCAGATCCTTTGGGTAGACGAATTGTCCCGACAGTAGATGCTGATATACTGAAGAAGGTGGAGGGAAATAAAAAGAAACGAAATAAAACAGAAAATGATCCAAATGAAGGTAACGAGTTGGATAATAGTTTCGAAGCGAATGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8830#0 AAGGTAACGAGTTGGATAATAGTTTCGAAGCGAATGATGAAGAAAATGATGGAAATGATG 60 consensus_8830#1 ------------------------------------------------------------ consensus_8830#0 AACCTAAACCGCTTGCTCAGCGTCTTGGTGTTTCTGAAAAAACAGATATACAGAAGACAG 120 consensus_8830#1 ------------------------TTCGTATGCTTAAAGAAGCCAAT---TATGATTCAG 33 ** ** * * ** ** * ** * * *** consensus_8830#0 CTACTACGCGTGGACGTGGTAAAGGAAGAACTGTCCCAGAAGTCG-TCCAAAGCTTCCGA 179 consensus_8830#1 ATCCT--GTTAAGGCATGG-AAAGAAAGCATAGACAAAGCAGCTGCTTTACAAGAACAGG 90 * ** * * * *** **** *** * * * ** ** * * * * * * consensus_8830#0 AACCATCTAGTCCAAATAATAGTCCTATTAAACGTAAAAATATGGGTGGAAATGCCAAAC 239 consensus_8830#1 AAGAAGCTCGTACAGATGAAGCTGTCTCTCAAACTGAAG---CGGTTGAAGCAGGCCAAC 147 ** * ** ** ** ** * * * ** * ** ** ** * * * *** consensus_8830#0 GTAA--ACGGTCTAGTCGTATGCCATGGGAGTCTGGC-TCTGACACTGGAGACTCAGCAA 296 consensus_8830#1 CTGACTACAATTATATTTTAAAT-ATGCCTTTATGGAGTTTGACGAAAGAGCGTAAAGAT 206 * * ** * * ** *** * *** * **** *** * * * consensus_8830#0 GTCATGCCTCTATTGATAG-TGATAATGAATACGTTTCCCCAATTTCTG---GTGGACCT 352 consensus_8830#1 GACTTGCTCGCTCAGAGAGATGCTAAGCAAAAAGAATTACTCATTCTAAAAAGTAAATCT 266 * * *** ** ** ** *** ** * * * * *** ** * ** consensus_8830#0 GCTGTAGATCGTGTACGACGTGAAAAAGCTGCAGCAACAAAATATGTTTTCGATGATGAC 412 consensus_8830#1 CCTTCTGATT---TGTGGCGTGAAGAC-CTTAAGAAATTAGAGGAGGAGTATAAGAAAGT 322 ** *** * * ****** * ** ** ** * * * * * ** consensus_8830#0 AGTAGTAGTAATGAGGAAGATAATGAACGAGAGGAGAACTTTAAAGTTGTTGATCATGGA 472 consensus_8830#1 TGAAGCGGAGTTG--GCTGCTGATGAACAGGCTGCAA---TTGAAGCAGCTGATAAAAAA 377 * ** * ** * * * ****** * * * ** *** * **** * * consensus_8830#0 CAAGGAAATAAAGAGATTGATATA-CCGATTGTTTCAGAAATTCAAGA-CAC-TAAGTCA 529 consensus_8830#1 TTAAAAATAGCATCGACTACAACAGCTGGTCGTGTTGCTGCTACAAAATCACGTAAATTA 437 * ** * ** * * * * * * ** * * *** * *** *** * * consensus_8830#0 TCAATCCCATCAAGTAGCAGTGGTGGTGGTGTATCTGTAAAGACTGATTCCGGGTCAACA 589 consensus_8830#1 GCAATGGAAACAAG-ACCAGATCCAATGG-GTA-----GACGAATTGTCCCGA--CAGTA 488 **** * **** * *** *** *** * ** * * *** ** * consensus_8830#0 TCTCGTGGTGCTTCTGCTATTGTATCAGGTCGTGGACGTGGTCGTGGTGGCAAAGGACGG 649 consensus_8830#1 ------GATGCTGATA-TAATGAAGAAGGTGGAGGGAAATAA-AAAGAAACGAAATAAAA 540 * **** * ** ** * **** * ** * * ** * consensus_8830#0 CAGTTTTCAGCTCCACCTAAATCACAACCTAGTATCAAATCAATGTTTCCTTCTCAGAAG 709 consensus_8830#1 CAG-----AAAATGATCCAAATGAAGGTAACGAGTTGGAT-AATAGTTTCGAAGCGAATG 594 *** * * * **** * * * ** *** ** * * * * consensus_8830#0 AAAACCACAGTAAACATTTCAACGGACGATGATTCTAATGATGCCACAAGTACAACTACT 769 consensus_8830#1 A----------------------------------------------------------- 595 * consensus_8830#0 CAAAAAGAGCCTAGAGTGATTTCTCGACGTACTGTAACGAATCGTGCTCGATACGTGTTT 829 consensus_8830#1 ------------------------------------------------------------ consensus_8830#0 GATGATGATGAAGATGACGATCTAGC 855 consensus_8830#1 -------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||