These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8835#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 848 fasta sequence [GGAGATTTTAATTCAATCTGAATACTTATCACCTTGTGATATATGGGCTGCCGGTTGTATCATAGCAGAGTTATTTAACTTACAGGCAATTTTCCGTGCAGATACAGAACTAGAGATGTTAAAACTCATATTTCAAGTTATTGGATTTCCTGCCCAAAATGAATGGCCTGCATTGTCTTACTTGAAACGACCTAATTTTCACTTCAACTCTTCTGGTTCAAAATTACGTTCGTGTATCAAAACTAACGATAAATCTGCACTCGAATTACTTGAACTAATGATTCAGTTCAATCCAAAAAAGCGAATCACTGCCTTCGATGCACTTTCACTACCGTATTTTCATCCTACTGTCACTAGTAGTACTAATACCGGTGGATCCGTTCAAAACCGTATTCAACACATTGAAACTGCTCTACATAAGCCATTATTAAGAAGTGCAAATGCTTCTCGATCAAATGGACGACAATCCCGCTACTCTGTGAATGCAATTTATCCTACACAGTCATGTGCGGCTGCATTGTCTTCTTATTTCCAGAATAATTTGCCTTCTGCAGTTAATTTTCGCCCATGTCCCGTTGGTGGTGGCGGCATTGATGGAGTTGATGGTTGTGTTCCAGTAACAAATGCTCAAACTGTACTTCTGCACTTACAAATGACCAAATAATTTCTACTTCGTGTAGTTCTGATATTGATCAGCATCAGCGTAATTTGATTATATCAGTTGTAAATAATGCCATTAGTGATACCTCATCATCTGTACCCTTAAATAACATTGACCGTAATTCTACCACACCACCTANGAGACCGCTAACTCGACAACAAACTAAATCTATCCGAAGGCATACACA] [+] EMBL CD114280 [GGAGATTTTAATTCAATCTGAATACTTATCACCTTGTGATATATGGGCTGCCGGTTGTATCATAGCAGAGTTATTTAACTTACAGGCAATTTTCCGTGCAGATACAGAACTAGAGATGTTAAAACTCATATTTCAAGTTATTGGATTTCCTGCCCAAAATGAATGGCCTGCATTGTCTTACTTGAAACGACCTAATTTTCACTTCAACTCTTCTGGTTCAAAATTACGTTCGTGTATCAAAACTAACGATAAATCTGCACTCGAATTACTTGAACTAATGATTCAGTTCAATCCAAAAAAGCGAATCACTGCCTTCGATGCACTTTCACTACCGTATTTTCATCCTACTGTCACTAGTAGTACTAATACCGGTGGATCCGTTCAAAACCGTATTCAACACATTGAAACTGCTCTACATAAGCCATTATTAAGAAGTGCAAATGCTTCTCGATCAAATGGACGACAATCCCGCTACTCTGTGAATGCAATTTATCCTACACAGTCATGTGCGGCTGCATTGTCTTCTTATTTCCAGAATAATTTGCCTTCTGCAGTTAATTTTCGCCCATGTCCCGTTGGTGGTGGCGGCATTGATGGAGTTGATGGTTGTGTTCCAGTAACAAATGCTCAAACTGTAC ] [+] EMBL CD201012 [ CGATGCACTTTCACTACCGTATTTTCATCCTACTGTCACTAGTAGTACTAATACCGGTGGATCCGTTCAAAACCGTATTCAACACATTGAAACTGCTCTACATAAGCCATTATTAAGAAGTGCAAATGCTTCTCGATCAAATGGACGACAATCCCGCTACTCTGTGAATGCAATTTATCCTACACAGTCATGTGCGGCTGCATTGTCTTCTTATTTCCAGAATAATTTGCCTTCTGCAGTTAATTTTCGCCCATGTCCCGTTGGTGGTGGCGGCATTGATGAAGTTGATGGTTGTGTTCCAGTAACAAATGCTCAAACTCTAATTCTGCACTTACAAATGACCAAATAATTTCTACTTCGTGTAGTTCTGATATTGATCAGCATCAGCGTAATTTGATTATATCAGTTGTAAATAATGCCATTAGTGATACCTCATCATCTGTACCCTTAAATAACATTGACCGTAATTCTACCACACCACCTANGAGACCGCTAACTCGACAACAAACTAAATCTATCCGAAGGCATACACA] consensusID : consensus_8835#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 528 fasta sequence [GGTGGTGGCGGCATTGATGAAGTTGATGGTTGTGTTCCAGTAACAAATGCTCAAACTGTACCTCACACACTTCACTCAACATTTAATCATTTAGCTAATTCTGCACTTACAAATGACCAAATAATTTCTACTTCGTGTAGTTCTGATATTGATCAGCATCAGCGTAATTTGATTATATCAGTTGTAAATAATGCCATTAGTGATACCTCATCATCTGTACCCTTAAATAACATTGACCGTAATTCTACCACACCACTTAGGAGACCGCTAACTCGACAACAAACTAAATCTATCCGAAGGCATACACAACCCACTAGAACCTGTCTTATGGAAAACAATTACGGAGTGAATAGTTCACAGAAAATTGGAAACCAGAAGACATGCAAAAACTCCATTGAAATCTTATCAGATAATACAGCCGTACAAAAGCCAAATAATACAGACCCTTTAAATGTAACAAGTCACGTAGTTAGACAGAAGAAAATAGCTCGCCGTCGAACAGTCATGGGGGTTGTAGAGACAGCTAAT] [-] EMBL AI068004 [GGTGGTGGCGGCATTGATGAAGTTGATGGTTGTGTTCCAGTAACAAATGCTCAAACTGTACCTCACACACTTCACTCAACATTTAATCATTTAGCTAATTCTGCACTTACAAATGACCAAATAATTTCTACTTCGTGTAGTTCTGATATTGATCAGCATCAGCGTAATTTGATTATATCAGTTGTAAATAATGCCATTAGTGATACCTCATCATCTGTACCCTTAAATAACATTGACCGTAATTCTACCACACCACTTAGGAGACCGCTAACTCGACAACAAACTAAATCTATCCGAAGGCATACACAACCCACTAGAACCTGTCTTATGGAAAACAATTACGGAGTGAATAGTTCACAGAAAATTGGAAACCAGAAGACATGCAAAAACTCCATTGAAATCTTATCAGATAATACAGCCGTACAAAAGCCAAATAATACAGACCCTTTAAATGTAACAAGTCACGTAGTTAGACAGAAGAAAATAGCTCGCCGTCGAACAGTCATGGGGGTTGTAGAGACAGCTAAT] [-] EMBL CD170204 [ CATTTAGCTAATTCTGCACTTACAAATGACCAAATAATTTCTACTTCGTGTAGTTCTGATATTGATCAGCATCAGCGTAATTTGATTATATCAGTTGTAAATAATGCCATTAGTGATACCTCATCATCTGCACCCTTAAATAACATTGACCGTAATTCTACCACACCACCTAGGAGACCGCTAACTCGACAACAAACTAAATCTATCCGAAGGCATACACAACCCACTAGAACCTGTCTTATGGAAAACAATTACGGAGTGAATAGTTCACAGAAAATTGGAAACCAGAAGACATGCAAAAACTCCATTGAAATCTTATCAGATAATACAG ] [-] EMBL AI067691 [ AATGACCAAATAATTTCTACTTCGTGTAGTTCTGATATTGATCAGCATCAGCGTAATTTGATTATATCAGTTGTAAATAATGCCATTAGTGATACCTCATCATCTGTACCCTTAAATAACATTGACCGTAATTCTACCACACCACTTAGGAGACCGCTAACTCGACAACAAACTAAATCTATCCGAAGGCATACACAACCCACTAGAACCTGTCTTATGGAAAACAATTACGGAGTGAATAGTTCACAGAAAATTGGAAACCAGAAGACATGCAAAAACTCCATTGAAATCTTATCAGATAATACAGCCGTACAAAAGCCAAATAATACAGACCCTTTAAATGTAACAAGTCACGTAGTTAGACAGAAGAAAATAGCTCGCCGTCGAACAGTCATGGGGGTTGTAGAGACAGCTAAT] [-] EMBL AI068140 [ GATATTGATCAGCATCAGCGTAATTTGATTATATCAGTTGTAAATAATGCCATTAGTGATACCTCATCATCTGTACCCTTAAATAACATTGACCGTAATTCTACCACACCACCTAGGAGACCGCTAACTCGACAACAAACTAAATCTATCCGAAGGCATACACAACCCACTAGAACCTGTCTTATGGAAAACAATTACGGAGTGAATAGTTCACAGAAAATTGGAAACCAGAAGACATGCAAAAACTCCATTGAAATCTTATCAGATAATACAGCCGTACAAAAGCCAAATAATACAGACCCTTTAAATGTAACAAGTCACGTAGTTAGACAGAAGAAAATAGCTCGCCGTCGAACAGTCATGGGGGTTGTAGAGACAGCTAAT] [-] EMBL AI068177 [ AGACCGCTAACTCGACAACAAACTACATCTATCCGAAGGCATACACAACCCACTAGAACCTGTCCTATGGAAAACAATTACGGAGTGAATAGTTCACAGAAAATTGGAAACCAGAAGACATGCAAAAACTCCATTGAAATCTTATCAGTTAATACAGCCGTACAAAAGCCAATTAATACAGACCCTTTAAATGTAACAAGTCACGTAGTTAGACAGAAGAAAATAGCTCGCCGTCGAACAGTCATGGGGGTTGTAGAGACAGCTAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8835#0 GGAGATTTTAATTCAATCTGAATACTTATCACCTTGTGATATATGGGCTGCCGGTTGTAT 60 consensus_8835#1 ---------------------------------------------------------GGT 3 * consensus_8835#0 CATAGCAGAGTTATTTAACTTACAGGCAATTTTCCGTGCAGATACAGAACTAGAGATGTT 120 consensus_8835#1 GGTGGCGGCATTGATGAAGTTGATGGTTGTGTTCC----AGTAACAAATGCTCAAACTGT 59 * ** * ** * ** ** ** * **** ** *** * * * * consensus_8835#0 AAAACTCATATTTCAAGTTATTGGATTTCCTGCCCAAAATGAATGGCCTGCATTGTCTTA 180 consensus_8835#1 ACCTCACACACTTCACTCAAC---ATTTAATCATTTAGCTAATT---CTGCA----CTTA 109 * * ** * **** * **** * * * * * ***** **** consensus_8835#0 CTTGAAACGACCTAATTTTCACTTCAACTC-TTCTGGTTCAAAATTACGTTCGTGTATCA 239 consensus_8835#1 CAAATGACCAAATAATTTCTACTTCGTGTAGTTCTGATATTGATCAGCATCAGCGTA--- 166 * ** * ****** ***** * ***** * * * * * *** consensus_8835#0 AAACTAACGATAAATCTGCACTCGAATTACTTGAACTAATGATTCAGTTCAATCCAAAAA 299 consensus_8835#1 -ATTTGATTATA----TCAGTTGTAAATAATGCCATTAGTGATACCTCATCATCTGTACC 221 * * * *** * * ** ** * * ** **** * *** * consensus_8835#0 AGCGAATCACTGCCTTCGATGCACTTTCACTACCGTATTTTCATCCTACTGTCACTAGTA 359 consensus_8835#1 CTTAAATAA---CATTGACCGTAATTCTACCACACCACTT--AGGAGACCGCTAACTCGA 276 *** * * ** * * ** ** ** * ** * ** * * * consensus_8835#0 GTACTAATACCGGTGGATCCGTTCAAAACCGTATTCAACACATTGAAACTGCTCTACATA 419 consensus_8835#1 CAACAAAC-----TAAATCTATCCGAAGGCATACACAACCCACTAGAACCTGTCT-TATG 330 ** ** * *** * * ** * ** **** ** * *** *** ** consensus_8835#0 AGCCATTATTAAGAAGTGCAAATGCTTCTCGATCAAATGGACGACAATCCCGCTACTCTG 479 consensus_8835#1 GAAAACAATTACGGAGTG--AATAGTTCACAGAAAATTGGA----AACCAGAAGAC---- 380 * **** * **** *** *** * ** **** ** * ** consensus_8835#0 TGAATGCAATTTATCCTACACAGTCATGTGCGGCTGCATTGTCTTCTTATTTCCAGAATA 539 consensus_8835#1 ---ATGCAAAAACTCCATTGAAATCTTATCAGATAATACAGCCGTACAAAAGCCA-AATA 436 ****** *** * ** * * * * * * * * *** **** consensus_8835#0 ATTTGCCTTCTGCAGTTAATTTTCGCCCATGTCCCGTTGGTGGTGGCGGCATTGATGGAG 599 consensus_8835#1 ATACAGACCCT----TTAAATGTAAC--AAGTCACGTAGTTA--GACAG-AAGAAAATAG 487 ** ** **** * * * * *** *** * * * * * * * ** consensus_8835#0 TTGATGGTTGTGTTCCAGTAACAAATGCTCAAACTGTACTTCTGCACTTACAAATGACCA 659 consensus_8835#1 CTCGCCGTCGAACAGTCATGGGGGTTGTAGAGACAGCTAAT------------------- 528 * ** * * ** * ** * * consensus_8835#0 AATAATTTCTACTTCGTGTAGTTCTGATATTGATCAGCATCAGCGTAATTTGATTATATC 719 consensus_8835#1 ------------------------------------------------------------ consensus_8835#0 AGTTGTAAATAATGCCATTAGTGATACCTCATCATCTGTACCCTTAAATAACATTGACCG 779 consensus_8835#1 ------------------------------------------------------------ consensus_8835#0 TAATTCTACCACACCACCTANGAGACCGCTAACTCGACAACAAACTAAATCTATCCGAAG 839 consensus_8835#1 ------------------------------------------------------------ consensus_8835#0 GCATACACA 848 consensus_8835#1 --------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||