Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 8835 cluster # 8835       Sequences # 7       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8835#0 length = 848 sequences # 2  
consensus_8835#1 length = 528 sequences # 5  

consensusID : consensus_8835#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 848
fasta sequence
                              [GGAGATTTTAATTCAATCTGAATACTTATCACCTTGTGATATATGGGCTGCCGGTTGTATCATAGCAGAGTTATTTAACTTACAGGCAATTTTCCGTGCAGATACAGAACTAGAGATGTTAAAACTCATATTTCAAGTTATTGGATTTCCTGCCCAAAATGAATGGCCTGCATTGTCTTACTTGAAACGACCTAATTTTCACTTCAACTCTTCTGGTTCAAAATTACGTTCGTGTATCAAAACTAACGATAAATCTGCACTCGAATTACTTGAACTAATGATTCAGTTCAATCCAAAAAAGCGAATCACTGCCTTCGATGCACTTTCACTACCGTATTTTCATCCTACTGTCACTAGTAGTACTAATACCGGTGGATCCGTTCAAAACCGTATTCAACACATTGAAACTGCTCTACATAAGCCATTATTAAGAAGTGCAAATGCTTCTCGATCAAATGGACGACAATCCCGCTACTCTGTGAATGCAATTTATCCTACACAGTCATGTGCGGCTGCATTGTCTTCTTATTTCCAGAATAATTTGCCTTCTGCAGTTAATTTTCGCCCATGTCCCGTTGGTGGTGGCGGCATTGATGGAGTTGATGGTTGTGTTCCAGTAACAAATGCTCAAACTGTACTTCTGCACTTACAAATGACCAAATAATTTCTACTTCGTGTAGTTCTGATATTGATCAGCATCAGCGTAATTTGATTATATCAGTTGTAAATAATGCCATTAGTGATACCTCATCATCTGTACCCTTAAATAACATTGACCGTAATTCTACCACACCACCTANGAGACCGCTAACTCGACAACAAACTAAATCTATCCGAAGGCATACACA]

[+] EMBL CD114280             [GGAGATTTTAATTCAATCTGAATACTTATCACCTTGTGATATATGGGCTGCCGGTTGTATCATAGCAGAGTTATTTAACTTACAGGCAATTTTCCGTGCAGATACAGAACTAGAGATGTTAAAACTCATATTTCAAGTTATTGGATTTCCTGCCCAAAATGAATGGCCTGCATTGTCTTACTTGAAACGACCTAATTTTCACTTCAACTCTTCTGGTTCAAAATTACGTTCGTGTATCAAAACTAACGATAAATCTGCACTCGAATTACTTGAACTAATGATTCAGTTCAATCCAAAAAAGCGAATCACTGCCTTCGATGCACTTTCACTACCGTATTTTCATCCTACTGTCACTAGTAGTACTAATACCGGTGGATCCGTTCAAAACCGTATTCAACACATTGAAACTGCTCTACATAAGCCATTATTAAGAAGTGCAAATGCTTCTCGATCAAATGGACGACAATCCCGCTACTCTGTGAATGCAATTTATCCTACACAGTCATGTGCGGCTGCATTGTCTTCTTATTTCCAGAATAATTTGCCTTCTGCAGTTAATTTTCGCCCATGTCCCGTTGGTGGTGGCGGCATTGATGGAGTTGATGGTTGTGTTCCAGTAACAAATGCTCAAACTGTAC                                                                                                                                                                                                                  ]
[+] EMBL CD201012             [                                                                                                                                                                                                                                                                                                                           CGATGCACTTTCACTACCGTATTTTCATCCTACTGTCACTAGTAGTACTAATACCGGTGGATCCGTTCAAAACCGTATTCAACACATTGAAACTGCTCTACATAAGCCATTATTAAGAAGTGCAAATGCTTCTCGATCAAATGGACGACAATCCCGCTACTCTGTGAATGCAATTTATCCTACACAGTCATGTGCGGCTGCATTGTCTTCTTATTTCCAGAATAATTTGCCTTCTGCAGTTAATTTTCGCCCATGTCCCGTTGGTGGTGGCGGCATTGATGAAGTTGATGGTTGTGTTCCAGTAACAAATGCTCAAACTCTAATTCTGCACTTACAAATGACCAAATAATTTCTACTTCGTGTAGTTCTGATATTGATCAGCATCAGCGTAATTTGATTATATCAGTTGTAAATAATGCCATTAGTGATACCTCATCATCTGTACCCTTAAATAACATTGACCGTAATTCTACCACACCACCTANGAGACCGCTAACTCGACAACAAACTAAATCTATCCGAAGGCATACACA]


>consensus_8835#0 GGAGATTTTAATTCAATCTGAATACTTATCACCTTGTGATATATGGGCTGCCGGTTGTAT CATAGCAGAGTTATTTAACTTACAGGCAATTTTCCGTGCAGATACAGAACTAGAGATGTT AAAACTCATATTTCAAGTTATTGGATTTCCTGCCCAAAATGAATGGCCTGCATTGTCTTA CTTGAAACGACCTAATTTTCACTTCAACTCTTCTGGTTCAAAATTACGTTCGTGTATCAA AACTAACGATAAATCTGCACTCGAATTACTTGAACTAATGATTCAGTTCAATCCAAAAAA GCGAATCACTGCCTTCGATGCACTTTCACTACCGTATTTTCATCCTACTGTCACTAGTAG TACTAATACCGGTGGATCCGTTCAAAACCGTATTCAACACATTGAAACTGCTCTACATAA GCCATTATTAAGAAGTGCAAATGCTTCTCGATCAAATGGACGACAATCCCGCTACTCTGT GAATGCAATTTATCCTACACAGTCATGTGCGGCTGCATTGTCTTCTTATTTCCAGAATAA TTTGCCTTCTGCAGTTAATTTTCGCCCATGTCCCGTTGGTGGTGGCGGCATTGATGGAGT TGATGGTTGTGTTCCAGTAACAAATGCTCAAACTGTACTTCTGCACTTACAAATGACCAA ATAATTTCTACTTCGTGTAGTTCTGATATTGATCAGCATCAGCGTAATTTGATTATATCA GTTGTAAATAATGCCATTAGTGATACCTCATCATCTGTACCCTTAAATAACATTGACCGT AATTCTACCACACCACCTANGAGACCGCTAACTCGACAACAAACTAAATCTATCCGAAGG CATACACA



consensusID : consensus_8835#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 528
fasta sequence
                              [GGTGGTGGCGGCATTGATGAAGTTGATGGTTGTGTTCCAGTAACAAATGCTCAAACTGTACCTCACACACTTCACTCAACATTTAATCATTTAGCTAATTCTGCACTTACAAATGACCAAATAATTTCTACTTCGTGTAGTTCTGATATTGATCAGCATCAGCGTAATTTGATTATATCAGTTGTAAATAATGCCATTAGTGATACCTCATCATCTGTACCCTTAAATAACATTGACCGTAATTCTACCACACCACTTAGGAGACCGCTAACTCGACAACAAACTAAATCTATCCGAAGGCATACACAACCCACTAGAACCTGTCTTATGGAAAACAATTACGGAGTGAATAGTTCACAGAAAATTGGAAACCAGAAGACATGCAAAAACTCCATTGAAATCTTATCAGATAATACAGCCGTACAAAAGCCAAATAATACAGACCCTTTAAATGTAACAAGTCACGTAGTTAGACAGAAGAAAATAGCTCGCCGTCGAACAGTCATGGGGGTTGTAGAGACAGCTAAT]

[-] EMBL AI068004             [GGTGGTGGCGGCATTGATGAAGTTGATGGTTGTGTTCCAGTAACAAATGCTCAAACTGTACCTCACACACTTCACTCAACATTTAATCATTTAGCTAATTCTGCACTTACAAATGACCAAATAATTTCTACTTCGTGTAGTTCTGATATTGATCAGCATCAGCGTAATTTGATTATATCAGTTGTAAATAATGCCATTAGTGATACCTCATCATCTGTACCCTTAAATAACATTGACCGTAATTCTACCACACCACTTAGGAGACCGCTAACTCGACAACAAACTAAATCTATCCGAAGGCATACACAACCCACTAGAACCTGTCTTATGGAAAACAATTACGGAGTGAATAGTTCACAGAAAATTGGAAACCAGAAGACATGCAAAAACTCCATTGAAATCTTATCAGATAATACAGCCGTACAAAAGCCAAATAATACAGACCCTTTAAATGTAACAAGTCACGTAGTTAGACAGAAGAAAATAGCTCGCCGTCGAACAGTCATGGGGGTTGTAGAGACAGCTAAT]
[-] EMBL CD170204             [                                                                                       CATTTAGCTAATTCTGCACTTACAAATGACCAAATAATTTCTACTTCGTGTAGTTCTGATATTGATCAGCATCAGCGTAATTTGATTATATCAGTTGTAAATAATGCCATTAGTGATACCTCATCATCTGCACCCTTAAATAACATTGACCGTAATTCTACCACACCACCTAGGAGACCGCTAACTCGACAACAAACTAAATCTATCCGAAGGCATACACAACCCACTAGAACCTGTCTTATGGAAAACAATTACGGAGTGAATAGTTCACAGAAAATTGGAAACCAGAAGACATGCAAAAACTCCATTGAAATCTTATCAGATAATACAG                                                                                                              ]
[-] EMBL AI067691             [                                                                                                               AATGACCAAATAATTTCTACTTCGTGTAGTTCTGATATTGATCAGCATCAGCGTAATTTGATTATATCAGTTGTAAATAATGCCATTAGTGATACCTCATCATCTGTACCCTTAAATAACATTGACCGTAATTCTACCACACCACTTAGGAGACCGCTAACTCGACAACAAACTAAATCTATCCGAAGGCATACACAACCCACTAGAACCTGTCTTATGGAAAACAATTACGGAGTGAATAGTTCACAGAAAATTGGAAACCAGAAGACATGCAAAAACTCCATTGAAATCTTATCAGATAATACAGCCGTACAAAAGCCAAATAATACAGACCCTTTAAATGTAACAAGTCACGTAGTTAGACAGAAGAAAATAGCTCGCCGTCGAACAGTCATGGGGGTTGTAGAGACAGCTAAT]
[-] EMBL AI068140             [                                                                                                                                                GATATTGATCAGCATCAGCGTAATTTGATTATATCAGTTGTAAATAATGCCATTAGTGATACCTCATCATCTGTACCCTTAAATAACATTGACCGTAATTCTACCACACCACCTAGGAGACCGCTAACTCGACAACAAACTAAATCTATCCGAAGGCATACACAACCCACTAGAACCTGTCTTATGGAAAACAATTACGGAGTGAATAGTTCACAGAAAATTGGAAACCAGAAGACATGCAAAAACTCCATTGAAATCTTATCAGATAATACAGCCGTACAAAAGCCAAATAATACAGACCCTTTAAATGTAACAAGTCACGTAGTTAGACAGAAGAAAATAGCTCGCCGTCGAACAGTCATGGGGGTTGTAGAGACAGCTAAT]
[-] EMBL AI068177             [                                                                                                                                                                                                                                                                     AGACCGCTAACTCGACAACAAACTACATCTATCCGAAGGCATACACAACCCACTAGAACCTGTCCTATGGAAAACAATTACGGAGTGAATAGTTCACAGAAAATTGGAAACCAGAAGACATGCAAAAACTCCATTGAAATCTTATCAGTTAATACAGCCGTACAAAAGCCAATTAATACAGACCCTTTAAATGTAACAAGTCACGTAGTTAGACAGAAGAAAATAGCTCGCCGTCGAACAGTCATGGGGGTTGTAGAGACAGCTAAT]


>consensus_8835#1 GGTGGTGGCGGCATTGATGAAGTTGATGGTTGTGTTCCAGTAACAAATGCTCAAACTGTA CCTCACACACTTCACTCAACATTTAATCATTTAGCTAATTCTGCACTTACAAATGACCAA ATAATTTCTACTTCGTGTAGTTCTGATATTGATCAGCATCAGCGTAATTTGATTATATCA GTTGTAAATAATGCCATTAGTGATACCTCATCATCTGTACCCTTAAATAACATTGACCGT AATTCTACCACACCACTTAGGAGACCGCTAACTCGACAACAAACTAAATCTATCCGAAGG CATACACAACCCACTAGAACCTGTCTTATGGAAAACAATTACGGAGTGAATAGTTCACAG AAAATTGGAAACCAGAAGACATGCAAAAACTCCATTGAAATCTTATCAGATAATACAGCC GTACAAAAGCCAAATAATACAGACCCTTTAAATGTAACAAGTCACGTAGTTAGACAGAAG AAAATAGCTCGCCGTCGAACAGTCATGGGGGTTGTAGAGACAGCTAAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8835#0      GGAGATTTTAATTCAATCTGAATACTTATCACCTTGTGATATATGGGCTGCCGGTTGTAT 60
consensus_8835#1      ---------------------------------------------------------GGT 3
                                                                                 *

consensus_8835#0      CATAGCAGAGTTATTTAACTTACAGGCAATTTTCCGTGCAGATACAGAACTAGAGATGTT 120
consensus_8835#1      GGTGGCGGCATTGATGAAGTTGATGGTTGTGTTCC----AGTAACAAATGCTCAAACTGT 59
                        * ** *  **  * ** **   **   * ****    **  *** *     * *   *

consensus_8835#0      AAAACTCATATTTCAAGTTATTGGATTTCCTGCCCAAAATGAATGGCCTGCATTGTCTTA 180
consensus_8835#1      ACCTCACACACTTCACTCAAC---ATTTAATCATTTAGCTAATT---CTGCA----CTTA 109
                      *   * ** * ****    *    ****  *     *  * * *   *****    ****

consensus_8835#0      CTTGAAACGACCTAATTTTCACTTCAACTC-TTCTGGTTCAAAATTACGTTCGTGTATCA 239
consensus_8835#1      CAAATGACCAAATAATTTCTACTTCGTGTAGTTCTGATATTGATCAGCATCAGCGTA--- 166
                      *     ** *  ******  *****   *  ***** *    *    * *  * ***   

consensus_8835#0      AAACTAACGATAAATCTGCACTCGAATTACTTGAACTAATGATTCAGTTCAATCCAAAAA 299
consensus_8835#1      -ATTTGATTATA----TCAGTTGTAAATAATGCCATTAGTGATACCTCATCATCTGTACC 221
                       *  * *  ***    *    *  ** ** *   * ** **** *      ***   *  

consensus_8835#0      AGCGAATCACTGCCTTCGATGCACTTTCACTACCGTATTTTCATCCTACTGTCACTAGTA 359
consensus_8835#1      CTTAAATAA---CATTGACCGTAATTCTACCACACCACTT--AGGAGACCGCTAACTCGA 276
                          *** *   * **    * * **  ** **   * **  *    ** *  *     *

consensus_8835#0      GTACTAATACCGGTGGATCCGTTCAAAACCGTATTCAACACATTGAAACTGCTCTACATA 419
consensus_8835#1      CAACAAAC-----TAAATCTATCCGAAGGCATACACAACCCACTAGAACCTGTCT-TATG 330
                        ** **      *  ***  * * **  * **  **** ** *  ***   ***  ** 

consensus_8835#0      AGCCATTATTAAGAAGTGCAAATGCTTCTCGATCAAATGGACGACAATCCCGCTACTCTG 479
consensus_8835#1      GAAAACAATTACGGAGTG--AATAGTTCACAGAAAATTGGA----AACCAGAAGAC---- 380
                          *  **** * ****  ***  *** *    ** ****    ** *     **    

consensus_8835#0      TGAATGCAATTTATCCTACACAGTCATGTGCGGCTGCATTGTCTTCTTATTTCCAGAATA 539
consensus_8835#1      ---ATGCAAAAACTCCATTGAAATCTTATCAGATAATACAGCCGTACAAAAGCCA-AATA 436
                         ******    ***     * ** * *  *     *  * * *   *   *** ****

consensus_8835#0      ATTTGCCTTCTGCAGTTAATTTTCGCCCATGTCCCGTTGGTGGTGGCGGCATTGATGGAG 599
consensus_8835#1      ATACAGACCCT----TTAAATGTAAC--AAGTCACGTAGTTA--GACAG-AAGAAAATAG 487
                      **       **    **** * *  *  * *** *** * *   * * * *   *   **

consensus_8835#0      TTGATGGTTGTGTTCCAGTAACAAATGCTCAAACTGTACTTCTGCACTTACAAATGACCA 659
consensus_8835#1      CTCGCCGTCGAACAGTCATGGGGGTTGTAGAGACAGCTAAT------------------- 528
                       *    ** *        *      **   * ** *    *                   

consensus_8835#0      AATAATTTCTACTTCGTGTAGTTCTGATATTGATCAGCATCAGCGTAATTTGATTATATC 719
consensus_8835#1      ------------------------------------------------------------
                                                                                  

consensus_8835#0      AGTTGTAAATAATGCCATTAGTGATACCTCATCATCTGTACCCTTAAATAACATTGACCG 779
consensus_8835#1      ------------------------------------------------------------
                                                                                  

consensus_8835#0      TAATTCTACCACACCACCTANGAGACCGCTAACTCGACAACAAACTAAATCTATCCGAAG 839
consensus_8835#1      ------------------------------------------------------------
                                                                                  

consensus_8835#0      GCATACACA 848
consensus_8835#1      ---------
                               




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)