These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8836#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1101 fasta sequence [GAGGGGCAGAGTACATTCATACTTACGAATCCTAATCATCTGCTTAAATATAAACCTCGTAGCCTTTCCGTTCTAAAATTAAAGTAGATATATTTCATATAAGAAGTACATTTGACATACACCTTCATCACTTGTGGCTCAGTTAGTCAGACTGATATAAGTGAAGTAATGTAATAACACCTTATGGTTGAAAACCGAACGTCTTTCTTACTAAACTATTTCTCAAGTGAAGTCCTTTTATGAATAAAAAAACCTACATCACATCATTACTATTATTCGCCGATTCGACTGACATATGCTTTCAATTTTTCAGGATTTAAAAAACCAAGGGATGCCAAATTCTTGTCAAAATAGATATCGTCGAATACTCCGGCGCAGAAAAGAAAGGCGAAGACAGGAAAAATTTCGCAAGAAGATAGCTTTGCGCAATAAAATAAGGGCAGATATAGAACTAAACCGTTATCACAGCAAAAAGTTTCGGAAGAAGGAAGTCTCTAACAGATTGCAGATCGCACTGCATGAAGGAATAAGGATCTACATAGATTGTTCTTACGAGGCTCTTATGTCTCCTAAAGTTCGTGTTAACGCGGAAAGCTATCACTNTGTAGGAATGTAATAAATTCGCTCAACAACTATGTCGACTNTATGGAGCANAC-AAAAAGCAACGAAGCCCCTTAGTATTAACCTTGTGAA-TTTTCACAACATGGACCTTTATTTCATGCTTGCCAGTCCANATGTGANCGATTCCT-ACGTATAAGAATGGA-TGTACTCTGAAACACCATC-AGTA-TACACC--AAAAT-TAGAAATCGTGTACTCAGTCCGACGCAAGAACACTGATTCTATATCGAAATGGGCGACGTNCTAGATGTCTGGGATGACTTACTAGGGNACTACGACAGACTGAATCAGTTACCGGCTGCATNCTATGAAAGTCATTGAAAATCACCTGTACGAATCAGCNCATATGTACATGGATGCGACGAGGGCCATCAACCAGTGAACAATTGACTGTCTGAAGGCTAAAAAAACTGCGCCTCTTGGATTTGGGTANGGAGCATTACTCTTACCCACAAGGAAGGGGGGGGTTTNCNNNNAAGAGNNNA] [+] EMBL CD082112 [GAGGGGCAGAGTACATTCATACTTACGAATCCTAATCATCTGCTTAAATATAAACCTCGTAGCCTTTCCGTTCTAAAATTAAAGTAGATATATTTCATATAAGAAGTACATTTGACATACACCTTCATCACTTGTGGCTCAGTTAGTCAGACTGATATAAGTGAAGTAATGTAATAACACCTTATGGTTGAAAACCGAACGTCTTTCTTACTAAACTATTTCTCAAGTGAAGTCCTTTTATGAATAAAAAAACCTACATCACATCATTACTATTATTCGCCGATTCGACTGACATATGCTTTCAATTTTTCAGGATTTAAAAAACCAAGGGATGCCAAATTCTTGTCAAAATAGATATCGTCGAATACTCCGGCGCAGAAAAGAAAGGCGAAGACAGGAAAAATTTCGCAAGAAGATAGCTTTGCGCAATAAAATAAGGGCAGATATAGAACTAAACCGTTATCACAGCAAAAAGTTTCGGAAGAAGGAAGTCTCTAACAGATTGCAGATCGCACTGCATGAAGGAATAAGGATCTACATAGATTGTTCTTACGAGGCTCTTATGTCTCCTAAAGTTCGTGTTAACGCGGAAAGCTATCACTNTGTAGGAATGTAATAAATTCGCTCAACAACTATGTCGACTNTATGGAGCANAC AAAAAGCAACGAAGCCCCTTAGTATTAACCTTGTGAA TTTTCACAACATGGACCTTTATTTCATGCTTGCCAGTCCANATGTGANCGATTCCT ACGTATAAGAATGGA TGTACTCTGAAACACCATC AGTA TACACC AAAAT TAGAAATCGTGTACTCAGTCCGACGCAAGAACACTGATTCTATATCGAAATGGGCGACGTNCTAGATGTCTGGGATGACTTACTAGGGNACTACGACAGACTGAATCAGTTACCGGCTGCATNCTATGAAAGTCATTGAAAATCACCTGTACGAATCAGCNCATATGTACATGGATGCGACGAGGGCCATCAACCAGTGAACAATTGACTGTCTGAAGGCTAAAAAAACTGCGCCTCTTGGATTTGGGTANGGAGCATTACTCTTACCCACAAGGAAGGGGGGGGTTTNCNNNNAAGAGNNNA] [-] EMBL CD098280 [ GTTTCGGAAGAAGGAAGTCTCTAACAGATTGCAGATCGCACTGCATGAAGGAATAAGGATCTACATAGATTGTTCTTACGAGGCTCTTATGTCTCCTAAAGTTCGTGTTAACGCGGAAAGCTATCACTTTGCAGGAATGTAATAAATTCGCTCAACAACTATGTCGACTTTATGGAGCAAACAAAAAAGCAACGAAGCCCTTAAGTATTAACCTTGTGAATTTTTCACAACATGGACCTTTATTTCATGCTTGCCAGTCCAAATGTGACGGATTCCTAACGTATAAGATTGGATTGTACTCTGAAACACCATCAAGCATTACACCAGAAAATATAGAAATCGTGTAC ] consensusID : consensus_8836#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 615 fasta sequence [AAGTTCGTGTTAACGCGGAAAGCTATCACTTTGTAGGAATGTAATAAATTCGCTCAACAACTATGTCGACTTTATGGAGCAAACAAAAAAGCAACGAAGCCCTTAAGTATTAACCTTGTGAATTTTTCACAACATGGACCTTTATTTCATGCTTGCCAGTCCAAATGTGACGGATTCCTAACGTATAAGATTGGATTGTACTCTGAAACACCATCAAGTATTACACCAAAAAATATAGAAATCGTGTACCTCAGTCCGGACGCAAAAGAACCACTGATATCTATATCGGAAAATTGTGCGTACGTTTTAGGATGTCTTGTGGATGAACATATACTAAAGGGACGTAGCCGACAAGAAGCTGAGAATCAA-GGTTACCGTGCCGT-GCGACTCCCTATTGAAGAGTTTACATCTGGAAAAAATTCCAACCCTGTGTTAGCGATAAATCATGTCGTCGATATATTGTTAGCATATATGGAAAATGGCGGTGACTGGAAGGCGGCCTTACATTTTAAATTACCTCAAAGATTTTTGAAATAATACATATATATGTGACACTTTGTTATAACTCATGAAGAAATGCAAGTTGTATAATAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CD075727 [AAGTTCGTGTTAACGCGGAAAGCTATCACTTTGTAGGAATGTAATAAATTCGCTCAACAACTATGTCGACTTTATGGAGCAAACAAAAAAGCAACGAAGCCCTTAAGTATTAACCTTGTGAATTTTTCACAACATGGACCTTTATTTCATGCTTGCCAGTCCAAATGTGACGGATTCCTAACGTATAAGATTGGATTGTACTCTGAAACACCATCAAGTATTACACCAAAAAATATAGAAATCGTGTACCTCAGTCCGGACGCAAAAGAACCACTGATATCTATATCGGAAAATTGTGCGTACGTTTTAGGATGTCTTGTGGATGAACATATACTAAAGGGACGTAGCCGACAAGAAGCTGAGAATCAA GGTTACCGTGCCGT GCGACTCCCTATTGAAGAGTTTACATCTGGAAAAAATTCCAACCCTGTGTTAGCGATAAATCATGTCGTCGATATATTGTTAGCATATATGGAAAATGGCGGTGACTGGAAGGCGGCCTTACATTTTAAATTACCTCAAAGATTTTTGAAATAATACATATATATGTGACACTTTGTTATAACTCATGAAGAAATGCAAG ] [-] EMBL AI395090 [ GCTGGTGATCAAGGGTTACCGT ACGTAGCGACTCCTTATTGAGGAGTTTACATCTGGAAAAAATTCCAACCGTGTGTTAGCGATAAATCATGTCGTCGATCTATTGTTAGCATGTATGGAAAATGGCGGTGACTGGAAGGCGGCCTTACATTGTAAATTACCTCAAAGATTTTTGAAATAATACATATATATGTGACACTTTGTTATAACTCATGAAGAAATGCAAGTTGTATAATAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_8836#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 498 fasta sequence [AACTGACGGCGGTGTAGCCGAATAGTTTATGTGCTCCTGGTCTCTATCCCGAGATTGTCATAATCTGAGGATTTAAAAAACCAAGGGATGCCAAATTCTTGTCAAAATAGATATCGTCGAATACTCCGGCGCAGAAAAGAAAGGCGAAGACAGGAAAAATTTCGCAAGAAGATAGCTTTGCGCAATAAAATAAGGGCAGATATAGAACTAAACCGTTATCACAGCAAAAAGTTTCGGAAGAAGGAAGTCTCTAACAGATTGCAGATCGCACTGCATGAAGGAATAAGGATCTACATAGATTGTTCTTACGAGGCTCTTATGTCTCCTAAAGAATGTAATAAATTCGCTCAACAACTATGTCGACTTTATGGAGCAAACAAAAAAGCAACGAAGCCCTTAAGTATTAACCTTGTGAATTTTTCACAACATGGACCTTTATTTCATGCTTGCCAGTCCAAATGTGACGGATTCCTAACGCATAAGATTGGATTGTACTCT] [+] EMBL CD121037 [AACTGACGGCGGTGTAGCCGAATAGTTTATGTGCTCCTGGTCTCTATCCCGAGATTGTCATAATCTGAGGATTTAAAAAACCAAGGGATGCCAAATTCTTGTCAAAATAGATATCGTCGAATACTCCGGCGCAGAAAAGAAAGGCGAAGACAGGAAAAATTTCGCAAGAAGATAGCTTTGCGCAATAAAATAAGGGCAGATATAGAACTAAACCGTTATCACAGCAAAAAGTTTCGGAAGAAGGAAGTCTCTAACAGATTGCAGATCGCACTGCATGAAGGAATAAGGATCTACATAGATTGTTCTTACGAGGCTCTTATGTCTCCTAAAGAATGTAATAAATTCGCTCAACAACTATGTCGACTTTATGGAGCAAACAAAAAAGCAACGAAGCCCTTAAGTATTAACCTTGTGAATTTTTCACAACATGGACCTTTATTTCATGCTTGCCAGTCCAAATGTGACGGATTCCTAACGCATAAGATTGGATTGTACTCT] [+] EMBL CD121108 [AACTGACGGCGGTGTAGCCGAATAGTTTATGTGCTCCTGGTCTCTATCCCGAGATTGTCATAATCTGAGGATTTAAAAAACCAAGGGATGCCAAATTCTTGTCAAAATAGATATCGTCGAATACTCCGGCGCAGAAAAGAAAGGCGAAGACAGGAAAAATTTCGCAAGAAGATAGCTTTGCGCAATAAAATAAGGGCAGATATAGAACTAAACCGTTATCACAGCAAAAAGTTTCGGAAGAAGGAAGTCTCTAACAGATTGCAGATCGCACTGCATGAAGGAATAAGGATCTACATAGATTGTTCTTACGAGGCTCTTATGTCTCCTAAAGAATGTAATAAATTCGCTCAACAACTATGTCGACTTTATGGAGCAAACAAAAAAGCAACGAAGCCCTTAAGTATTAACCTTGTGAATTTTTCACAACATGGACCTTTATTTCATGCTTGCCAGTCCAAATGTGACGGATTCCTAACGTATAAGATTGGATTGTACTCT] consensusID : consensus_8836#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 307 fasta sequence [ACGTCCCTTTAGTATATGTTCATCCACAAGACATCCTAGAACGTACGCACAATTTTCCGATATAGATATCAGTGGCTCTTTTGCGTCCGGACTGAGGTACACGATTTCTATATTTTCTGGTGTAATGCTTGATGGTGTTTCAGAGTACAATCCAATCTAATGAGATAGTTAAATAGCATTTTGTAATAAAGCGAAATAATACGAAAACTGTATATCTGGATATGAGTCGTTTTTGTCACGAAGCTAGAAGTGCACACATACATACGATCATTTACCAGGCTAGTGAGATAGTGGAGCTACATTGGTA] [+] EMBL CD170229 [ACGTCCCTTTAGTATATGTTCATCCACAAGACATCCTAGAACGTACGCACAATTTTCCGATATAGATATCAGTGGCTCTTTTGCGTCCGGACTGAGGTACACGATTTCTATATTTTCTGGTGTAATGCTTGATGGTGTTTCAGAGTACAATCCAATCTAATGAGATAGTTAAATAGCATTTTGTAATAAAGCGAAATAATACGAAAACTGTATATCTGGATATGAGTCGTTTTTGTCACGAAGCTAGAAGTGCACACATACATACGATCATTTACCAGGCTAGTGAGATAGTGGAGCTACATTGGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8836#0 GAGGGGCAGAGTACATTCATACTTACGAATCCTAATCATCTGCTTAAATATAAACCTCGT 60 consensus_8836#2 ------------------------------------------------------------ consensus_8836#1 ------------------------------------------------------------ consensus_8836#3 ------------------------------------------------------------ consensus_8836#0 AGCCTTTCCGTTCTAAAATTAAAGTAGATATATTTCATATAAGAAGTACATTTGACATAC 120 consensus_8836#2 ------------------------------------------------------------ consensus_8836#1 ------------------------------------------------------------ consensus_8836#3 ------------------------------------------------------------ consensus_8836#0 ACCTTCATCACTTGTGGCTCAGTTAGTCAGACTGATATAAGTGAAGTAATGTAATAACAC 180 consensus_8836#2 ------------------------------------------------------------ consensus_8836#1 ------------------------------------------AAGTTCGTGTTAACGCGG 18 consensus_8836#3 ------------------------------------------------------------ consensus_8836#0 CTTATGGTTGAAAACCGAACGTCTTTCTTACTAAACTATTTCTCAAGTGAAGTC--CTTT 238 consensus_8836#2 ------------------------------------------------------------ consensus_8836#1 AAAGCTATCACTTTGTAGGAATGTAATAAATTCGCTCAACAACTATGTCGACTT--TATG 76 consensus_8836#3 --------------------------------------------ACGTCCCTTTAGTATA 16 consensus_8836#0 TATGAATAAAAAAACCTACATCACATCATTACTATTATTCGCCGATTCGACTGACATATG 298 consensus_8836#2 ----AACTGACGGCGGTGTAGCCGAATAGTTTATGTGCTCCTGGTCTCTATCCCGAGATT 56 consensus_8836#1 GAGCAAACAAAAAAGCAACGAAGCCCTTAAGTATTAACCTTGTGAATTTTTCACAACATG 136 consensus_8836#3 TGTTCATCCACAAGACATCCTAGAACGTACGCA-CAATTTTCCGATATAGATATCAGTGG 75 * * * * consensus_8836#0 C-TTTCAATTTTTCAGGATTTAAAAAACCAAGGGATGCCAAATTCTTGTCAAAATAGATA 357 consensus_8836#2 G-TCATAATCTG--AGGATTTAAAAAACCAAGGGATGCCAAATTCTTGTCAAAATAGATA 113 consensus_8836#1 GACCTTTATTTC---ATGCTTGCCAGTCCAAATG-TGACGGATTCCTAACGTATAAGATT 192 consensus_8836#3 CTCTTTTGCGTC------CGGACTGAGGTACACGATTTCTATATTTTCTGGTGTAATGCT 129 * * * * * * * * consensus_8836#0 TCGTCGAATACTCCGGCGCAGAAAAGAAAGGCGA-AGACAGGAAAAATTTCGCAAGAAGA 416 consensus_8836#2 TCGTCGAATACTCCGGCGCAGAAAAGAAAGGCGA-AGACAGGAAAAATTTCGCAAGAAGA 172 consensus_8836#1 GGATTGTACTCTGAAACACCATCAAGTATTACACCAAAAAATATAGAAATCGTGTACCTC 252 consensus_8836#3 TGATGGTGTTTCAGAGTACAATCCAATCTAATGAGATAGTTAAATAGCATTTTGTAATAA 189 * * * * * * * * consensus_8836#0 TAGCTTTGCGCAATAAAATAAG-GGCAGATATAGAACTAAACCGTTATCACAGC--AAAA 473 consensus_8836#2 TAGCTTTGCGCAATAAAATAAG-GGCAGATATAGAACTAAACCGTTATCACAGC--AAAA 229 consensus_8836#1 AGTCCGGACGCAAAAGAACCACTGATATCTATATCGGAAAATTGTGCGTACGTTTTAGGA 312 consensus_8836#3 AGC---GAAATAATACGAAAAC-TGTATATCTGGATATGAGTCGTTTTTGTCACGAAGCT 245 ** * * * * * * * ** * consensus_8836#0 AGTTTCGGAAGAAGGAAGTCTCTAACAGATTGCAGATCGCACTGCATGAAGGAATAAGGA 533 consensus_8836#2 AGTTTCGGAAGAAGGAAGTCTCTAACAGATTGCAGATCGCACTGCATGAAGGAATAAGGA 289 consensus_8836#1 TGTCTTGTGGATGAACATATACTAAAGGGACGTAGCCGACAAGAAGCTGAGAATCAAGGT 372 consensus_8836#3 AGAAGTGCACACATACATACGATCATTTACCAGGCTAGTGAGATAGTGGAGCTACATTGG 305 * * * * * * ** * * consensus_8836#0 T-CTACATAGATTG--TTCTTAC-GAGGCTCTTATGTCTCCTAAAGTTCGTGTTAACGCG 589 consensus_8836#2 T-CTACATAGATTG--TTCTTAC-GAGGCTCTTATGTCTCCTAAAG-------------- 331 consensus_8836#1 TACCGTGCCGTGCGACTCCCTATTGAAGAGTTTACATCTGGAAAAAATTCCAACCCTGTG 432 consensus_8836#3 TA---------------------------------------------------------- 307 * consensus_8836#0 GAAAGCTATCACTNTGTAGGAATGTAATAAATTCGCTCAACAACTATGTCGACTNTATGG 649 consensus_8836#2 --------------------AATGTAATAAATTCGCTCAACAACTATGTCGACTTTATGG 371 consensus_8836#1 --------TTAGCGATAAATCATGTCGTCGATATATTGTTAGCATATATGGA--AAATGG 482 consensus_8836#3 ------------------------------------------------------------ consensus_8836#0 AGCANACAAAAA-GCAACGAAGCCCCTTAGTATTAACCTTGTGAATTTT-CACAACATGG 707 consensus_8836#2 AGCAAACAAAAAAGCAACGAAGCCCTTAAGTATTAACCTTGTGAATTTTTCACAACATGG 431 consensus_8836#1 CGGTGACTGGAAGGCGGCCTTACATTTTA--AATTACCTCAAAGATTTTTGAAATAATAC 540 consensus_8836#3 ------------------------------------------------------------ consensus_8836#0 ACCTTTATTTCATGCTT-GCCAGTCCANATGTGANCGATTCCTA-CGTATAAGAATGGAT 765 consensus_8836#2 ACCTTTATTTCATGCTT-GCCAGTCCAAATGTGACGGATTCCTAACGCATAAGATTGGAT 490 consensus_8836#1 ATATATATGTGACACTTTGTTATAACTCATG-AAGAAATGCAAGTTGTATAATAAAAAAA 599 consensus_8836#3 ------------------------------------------------------------ consensus_8836#0 -GTACTCTGAAACACCATCAGTATACACCAAAATTAGAAATCGTGTACTCAGTCCGACGC 824 consensus_8836#2 TGTACTCT---------------------------------------------------- 498 consensus_8836#1 AAAAAAAAAAAAAAAA-------------------------------------------- 615 consensus_8836#3 ------------------------------------------------------------ consensus_8836#0 AAGAACACTGATTCTATATCGAAATGGGCGACGTNCTAGATGTCTGGGATGACTTACTAG 884 consensus_8836#2 ------------------------------------------------------------ consensus_8836#1 ------------------------------------------------------------ consensus_8836#3 ------------------------------------------------------------ consensus_8836#0 GGNACTACGACAGACTGAATCAGTTACCGGCTGCATNCTATGAAAGTCATTGAAAATCAC 944 consensus_8836#2 ------------------------------------------------------------ consensus_8836#1 ------------------------------------------------------------ consensus_8836#3 ------------------------------------------------------------ consensus_8836#0 CTGTACGAATCAGCNCATATGTACATGGATGCGACGAGGGCCATCAACCAGTGAACAATT 1004 consensus_8836#2 ------------------------------------------------------------ consensus_8836#1 ------------------------------------------------------------ consensus_8836#3 ------------------------------------------------------------ consensus_8836#0 GACTGTCTGAAGGCTAAAAAAACTGCGCCTCTTGGATTTGGGTANGGAGCATTACTCTTA 1064 consensus_8836#2 ------------------------------------------------------------ consensus_8836#1 ------------------------------------------------------------ consensus_8836#3 ------------------------------------------------------------ consensus_8836#0 CCCACAAGGAAGGGGGGGGTTTNCNNNNAAGAGNNNA 1101 consensus_8836#2 ------------------------------------- consensus_8836#1 ------------------------------------- consensus_8836#3 ------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||