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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8837#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 871 fasta sequence
[ATTTCGGCACGAGGACGCGCTTTAGATCGAATAAAATATCATCATTCATCTCAAAGTATTCAACCACTTGAAGGAAAACCACCTGTACGTTGTCTTAAGCGTTCACTTACCACTAATTCATTGGATATTCGTCATCAGTTAATTCGCCCAAAAGTTTTTAATCCATTTTGTGGTGGCAATAGTTATTCACAAAATACACCCTCAATAAGAAGAGTCCGAACAAATTCTAACACTGATTTATTGTCCGTTGATAATACCGTTAATAGTATTCTGGCGCCAACACCATCCACTACTTCAAATCAAATCCATCAAGTTCAATCCTCTCCACAAAAAGAACATTTGTCATACCATAGTCTTTCTACATGTAGTGAATAAGTGTATGATACATTACTTGTTTTCATTTCAACGAATCTATGTTGTTATAATCCTTATTTACAAATCAATCTGTATTCATTCTGTACATAGGTGTATAGTTTGTGTGTACATACATGTATATTCAGTTGATTTTAGTCGAACAATAAAATTACATTTCGAAACAATTTCCTCTTAACTACCCATTCATTTACAACCTGGTATTCACAATTCTCTCCTATTTTTTGTTATGTATAGTTTTTGTTTTGTTTGGTTTAAATAGTTCTGCTTACTTTCACTAGGTCTCAGCATTTCGATAATGGTTTTTTCTAAAAAACAGTTCTCTGTGCTAATCATTTATGCTTTGTGACATTATTACCGTCCAAGG-CCCTCTCGGTTATTGTTTTTTCCTCGTTATTCGTCTCAGCTTATGTTCACTGG-TGTGTTATTTATTTTACTTTGTATTTTTGTTATGTCTCTTC-TTTTCGCAATGACGTACGAATGTATATATATACATCTG]
[+] EMBL CD082284 [ATTTCGGCACGAGGACGCGCTTTAGATCGAATAAAATATCATCATTCATCTCAAAGTATTCAACCACTTGAAGGAAAACCACCTGTACGTTGTCTTAAGCGTTCACTTACCACTAATTCATTGGATATTCGTCATCAGTTAATTCGCCCAAAAGTTTTTAATCCATTTTGTGGTGGCAATAGTTATTCACAAAATACACCCTCAATAAGAAGAGTCCGAACAAATTCTAACACTGATTTATTGTCCGTTGATAATACCGTTAATAGTATTCTGGCGCCAACACCATCCACTACTTCAAATCAAATCCATCAAGTTCAATCCTCTCCACAAAAAGAACATTTGTCATACCATAGTCTTTCTACATGTAGTGAATAAGTGTATGATACATTACTTGTTTTCATTTCAACGAATCTATGTTGTTATAATCCTTATTTACAAATCAATCTGTATTCATTCTGTACATAGGTGTATAGTTTGTGTGTACATACATGTATATTCAGTTGATTTTAGTCGAACAATAAAATTACATTTCGAAACAATTTCCTCTTAACTACCCATTCATTTACAACCTGGTATTCACAATTCTCTCCTATTTTTTGTTATGTATAGTTTTTGTTTTGTTTGGTTTAAATAGTTCTGCTTACTTTCACTANGTCTCAGCATTTCGATAATGGTTNTTTCT AAAAACAGTTCTCTGTGCT ATCATTTATGCTNTGTGACATTATTACCGTNCAAGGCCCCTCTC GTTATTGGTTTTTCCTCGTTATTCGNCTCAGCTTATGTTCACTGGNNGNGNTATTTATTTTACTTTGNATTTTTGGTATGGCTCTTCTTTTTCGC ATGACGTACGAATGGAT TATTTACAnt ]
[+] EMBL CD079197 [ AGTATTCAACCACTTGAAGGAAAACCACCTGTACGTTGTCTTAAGCGTTCACTTACCACTAATTCATTGGATATTCGTCATCAGTTAATTCGCCCAAAAGTTTTTAATCCATTTTGTGGTGGCAATAGTTATTCACAAAATACACCCTCAATAAGAAGAGTCCGAACAAATTCTAACACTGATTTATTGTCCGTTGATAATACCGTTAATAGTATTCTGGCGCCAACACCATCCACTACTTCAAATCAAATCCATCAAGTTCAATCCTCTCCACAAAAAGAACATTTGTCATACCATAGTCTTTCTACATGTAGTGAATAAGTGTATGATACATTACTTGTTTTCATTTCAACGAATCTATGTTGTTATAATCCTTATTTACAAATCAATCTGTATTCATTCTGTACATAGGTGTATAGTTTGTGTGTACATACATGTATATTCAGTTGATTTTAGTCGAACAATAAAATTACATTTCGAAACAATTTCCTCTTAACTACCCATTCATTTACAACCTGGTATTCACAATTCTCTCCTATTTTTTGTTATGTATAGTTTTTGTTTTGTTTGGTTT NATAGTTCTGCTTACTTTCACTAGGTCTCAGCATTTCG ]
[+] EMBL CD084319 [ cgaggGTTTTTAATCCATTTTGTGGTGGC ATAGTTATTCACAAAATACACCCTCAATAAGAAGAGTCCGAACAAATTCTAACACTGATTTATTGTCCGTTGATAATACCGTTAATAGTATTCTGGCGCCAACACCATCCACTACTTCAAATCAAATCCATCAAGTTCAATCCTCTCCACAAAAAGAACATTTGTCATACCATAGTCTTTCTACATGTAGTGAATAAGTGTATGATACATTACTTGTTTTCATTTCAACGAATCTATGTTGTTATAATCCTTATTTACAAATCAATCTGTATTCATTCTGTACATAGGTGTATAGTTTGTGTGTACATACATGTATATTCAGTTGATTTTAGTCGAACAATAAAATTACATTTCGAAACAATTTCCTCTTAACTACCCATTCATTTACAACCTGGTATTCACAATTCTCTCCTATTTTTTG ]
[-] EMBL CD074419 [ ATTGTCCGTTGATAATACCGTTAATAGTATTCTGGCGCCAACACCATCCACTACTTCAAATCAAATCCATCAAGTTCAATCCTCTCCACAAAAAGAACATTTGTCATACCATAGTCTTTCTACATGTAGTGAATAAGTGTATGATACATTACTTGTTTTCATTTCAACGAATCTATGTTGTTATAATCCTTATTTACAAATCAATCTGTATTCATTCTGTACATAGGTGTATAGTTTGTGTGTACATACATGTATATTCAGTTGATTTTAGTCGAACAATAAAATTACATTTCGAAACAATTTCCTCTTAACTACCCATTCATTTACAACCTGGTATTCACAATTCTCTCCTATTTTTTGTTATGTATAGTTTTTGTTTTGTTTGGTTTAAATAGTTCTGCTTACTTTCACTAGGTCTCAGCATTTCGATAATGGTTTTTTCTAAAAAACAGTTCTCTGTGCTAATCATTTATGCTTTGTGACATTATTACCGTCCAAGG CCCTCTCGGTTATTGTTTTTTCCTCGTTATTCGTCTCAGCTTATGTTCACTGG TGTGTTATTTATTTTACTTTGTATTTTTGTTATGTCTCTTC TTTTCGCAATGACGTACGAATGTATATATATACATCTG]
[-] EMBL CD076797 [ CTTCAAATCAAATCCATCAAGTTCAATCCTCTCCACAAAAAGAACATTTGTCATACCATAGTCTTTCTACATGTAGTGAATAAGTGTATGATACATTACTTGTTTTCATTTCAACGAATCTATGTTGTTATAATCCTTATTTACAAATCAATCTGTATTCATTCTGTACATAGGTGTATAGTTTGTGTGTACATACATGTATATTCAGTTGATTTTAGTCGAACAATAAAATTACATTTCGAAACAATTTCCTCTTAACTACCCATTCATTTACAACCTGGTATTCACAATTCTCTCCTATTTTTTGTTATGTATAGTTTTTGTTTTGTTTGGTTTAAATAGTTCTGCTTACTTTCACTAGGTCTCAGCATTTCGATAATGGTTTTTTCTAAAAAACAGTTCTCTGTGCTAATCATTTATGCTTTGTGACATTATTACCGTCCAAGG CCCTCTCGGTTATTGTTTTTTCCTCGTTATTCGTCTCAGCTTATGTTCACTGG TGTGTTATTTATTTTACTTTGTATTTTTGTTATGTCTCTTC TTTTCGCAATGACGTACGAATGTATATATATACATCTG]
consensusID : consensus_8837#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 663 fasta sequence
[TGAAGAACCCAAAAATGCTATGCCTGCTTCTCCTAGTGTTGAAGGTTGTGACCAAGTGTCATCAAGTGTAGTCGACAGTCCTCTTGGCTTGGCAGAAGTTGTTGTAAGAGTCGGCCGTCGTGTAATAGCAGCAACATTGGGTAGTACCAATAATAACTGTTCTGAGGTTGCTCGCGCTTTAGATCGAATAAAATATCATCATTCACCTCAAAGTATTCAACCACTTGAAGGAAAACCACCTGTACGTTGTCTTAAGCGTTCACTTACCACTAATTCATTGGATATTCGTCATCAGTTAATTCGCCCAAAAGTTTTTAATCCATTTTGTGGTGGCAATAGTTATTCACAAAATACACCCTCAATAAGAAGAGTCCGAACAAATTCTAACACTGATTTATTGTCCGTTGATAATACCGTTAATAGTATTCTGGCGCCAACACCATCCACTACTTCAAATCAAATCCATCAAGTTCAATCCTCTCCACAAAAAGAACATTTGTCATACCATAGTCTTTCTACATGTAGTGAATAAGTGTATGATACATTACTTGTTTTCATTTCAACGAATCTATGTTGTTATAATCCTTATTTACAAATCAATCTGTATTCATTCTGTACATAGGTGTATAGTTTGTGTGTACATACATGTATATTCAGTTGATT]
[+] EMBL CD080508 [TGAAGAACCCAAAAATGCTATGCCTGCTTCTCCTAGTGTTGAAGGTTGTGACCAAGTGTCATCAAGTGTAGTCGACAGTCCTCTTGGCTTGGCAGAAGTTGTTGTAAGAGTCGGCCGTCGTGTAATAGCAGCAACATTGGGTAGTACCAATAATAACTGTTCTGAGGTTGCTCGCGCTTTAGATCGAATAAAATATCATCATTCACCTCAAAGTATTCAACCACTTGAAGGAAAACCACCTGTACGTTGTCTTAAGCGTTCACTTACCACTAATTCATTGGATATTCGTCATCAGTTAATTCGCCCAAAAGTTTTTAATCCATTTTGTGGTGGCAATAGTTATTCACAAAATACACCCTCAATAAGAAGAGTCCGAACAAATTCTAACACTGATTTATTGTCCGTTGATAATACCGTTAATAGTATTCTGGCGCCAACACCATCCACTACTTCAAATCAAATCCATCAAGTTCAATCCTCTCCACAAAAAGAACATTTGTCATACCATAGTCTTTCTACATGTAGTGAATAAGTGTATGATACATTACTTGTTTTCATTTCAACGAATCTATGTTGTTATAATCCTTATTTACAAATCAATCTGTATTCATTCTGTACATAGGTGTATAGTTTGTGTGTACATACATGTATATTCAGTTGATT]
consensusID : consensus_8837#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 389 fasta sequence
[ACAAACATGTATATTCAGTTGATTTTAGTCGAACAATAAAATTACATTTTGAAACAATTTCCTTTTAACTACCCCTTCATTTACAACCTGGTATTCCCAATTTTCTCCCATTTTTTGTTAAGAAAAGTTTTTGTTTTGTTTGGTTTAAAAAGTTTTGCTTACTTTCCCTAGGTTTCAGCATTTCGATAATGGTTTTTTTTAAAAAACAGTTTTCTGTGGTAATCATTTATGCTTTGTGACATTATTACCGTCCAAGGCCCTCTCGGGTATTGTTTTTTCCCCGTTATTTGTTTCAGCTTATGTTCCCTGGGGGGTTATTTATTTTACTTTGTATTTTTGTTAAGTTTTTTCTTTTCCCAAAGACGTACGAATGTATATAAAAACATCTG]
[-] EMBL CD075890 [ACAAACATGTATATTCAGTTGATTTTAGTCGAACAATAAAATTACATTTTGAAACAATTTCCTTTTAACTACCCCTTCATTTACAACCTGGTATTCCCAATTTTCTCCCATTTTTTGTTAAGAAAAGTTTTTGTTTTGTTTGGTTTAAAAAGTTTTGCTTACTTTCCCTAGGTTTCAGCATTTCGATAATGGTTTTTTTTAAAAAACAGTTTTCTGTGGTAATCATTTATGCTTTGTGACATTATTACCGTCCAAGGCCCTCTCGGGTATTGTTTTTTCCCCGTTATTTGTTTCAGCTTATGTTCCCTGGGGGGTTATTTATTTTACTTTGTATTTTTGTTAAGTTTTTTCTTTTCCCAAAGACGTACGAATGTATATAAAAACATCTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8837#0 ATTTCGGCACGAGGACGCGCTTTAGATCGAATAAAATATCATCATTCATCTCAAAGTATT 60
consensus_8837#2 ------------------------------------------------------------
consensus_8837#1 ------------------------------------------------------------
consensus_8837#0 CAACCACTTGAAGGAAAACCACCTGTACGTTGTCTTAAGCGTTCACTTACCACTAATTCA 120
consensus_8837#2 ------------------------------------------------------------
consensus_8837#1 ------------------------------------------------------------
consensus_8837#0 TTGGATATTCGTCATCAGTTAATTCGCCCAAAAGTTTTTAATCCATTTTGTGGTGGCAAT 180
consensus_8837#2 ------------------------------------------------------------
consensus_8837#1 ------------------------------------------------------------
consensus_8837#0 AGTTATTCACAAAATACACCCTCAATAAGAAGAGTCCGAACAAATTCTAACACTGATTTA 240
consensus_8837#2 ------------------------------------------------------------
consensus_8837#1 ------------------------------------------------------------
consensus_8837#0 TTGTCCGTTGATAATACCGTTAATAGTATTCTGGCGCCAACACCATCCACTACTTCAAAT 300
consensus_8837#2 ------------------------------------------------------------
consensus_8837#1 ------------------------------------------------------------
consensus_8837#0 CAAATCCATCAAGTTCAATCCTCTCCACAAAAAGAACATTTGTCATACCATAGTCTTTCT 360
consensus_8837#2 ------------------------------------------------------------
consensus_8837#1 ------------------------------------------------------------
consensus_8837#0 ACATGTAGTGAATAAGTGTATGATACATTACTTGTTTTCATTTCAACGAATCTATGTTGT 420
consensus_8837#2 ------------------------------------------------------------
consensus_8837#1 -------------------------------TGAAGAACCCAAAAATGCTATGCCTGCTT 29
consensus_8837#0 TATAATCCTTATTTACAAATCAATCTGTATTCATTCTGTACATAGGTGTATAGTTTGTGT 480
consensus_8837#2 ------------------------------------------------------------
consensus_8837#1 CTCCTAGTGTTGAAGGTTGTGACCAAGTGTCATCAAGTGTAGTCGACAGTCCTCTTGGCT 89
consensus_8837#0 GTACATACATGTATATTC-AGTTGATTTTAGTCGAA---CAATAAAATTACAT----TTC 532
consensus_8837#2 --ACAAACATGTATATTC-AGTTGATTTTAGTCGAA---CAATAAAATTACAT----TTT 50
consensus_8837#1 TGGCAGAAGTTGTTGTAAGAGTCGGCCGTCGTGTAATAGCAGCAACATTGGGTAGTACCA 149
** * * * * *** * * ** ** ** ** *** *
consensus_8837#0 GAAACAATTTCCTCTTAACTACCC---ATTCATTTACAACCTGGTATTCACAATTCTCTC 589
consensus_8837#2 GAAACAATTTCCTTTTAACTACCC---CTTCATTTACAACCTGGTATTCCCAATTTTCTC 107
consensus_8837#1 ATAATAACTGTTCTGAGGTTGCTCGCGCTTTAGATCGAATAAAATATCATCATTCACCTC 209
** ** * * * * ** * * ** *** ** * ***
consensus_8837#0 CTATTTTTTG-----TTATGTATAGTTTTTGTTTTGTTTGGTTTAAATAGTTCTGCTTAC 644
consensus_8837#2 CCATTTTTTG-----TTAAGAAAAGTTTTTGTTTTGTTTGGTTTAAAAAGTTTTGCTTAC 162
consensus_8837#1 AAAGTATTCAACCACTTGAAGGAAAACCACCTGTACGTTGTCTTAAGCG--TTCACTTAC 267
* * ** ** * * * *** **** * *****
consensus_8837#0 T-----TTCACTAGGTCTCAGCATTTCGATAATGGTTTTT----TCTAAAAAACAGTTCT 695
consensus_8837#2 T-----TTCCCTAGGTTTCAGCATTTCGATAATGGTTTTT----TTTAAAAAACAGTTTT 213
consensus_8837#1 CACTAATTCATTGGATATTCGTCATCAGTTAATTCGCCCAAAAGTTTTTAATCCATTTTG 327
*** * * * * * * * **** * * ** ** **
consensus_8837#0 CTGTGCTAAT---CATTTATGCTTTGTGACATTATTACC----GTCCAAGGCCCTCTCGG 748
consensus_8837#2 CTGTGGTAAT---CATTTATGCTTTGTGACATTATTACC----GTCCAAGGCCCTCTCGG 266
consensus_8837#1 TGGTGGCAATAGTTATTCACAAAATACACCCTCAATAAGAAGAGTCCGAACAAATTCTAA 387
*** *** *** * * * * * ** **** * *
consensus_8837#0 TTATTGTTTTTTCCTCGTTATTCGTCTCAGCTTATGTTCACTGGTGTGTTATTTATTT-- 806
consensus_8837#2 GTATTGTTTTTTCCCCGTTATTTGTTTCAGCTTATGTTCCCTGGGGGGTTATTTATTT-- 324
consensus_8837#1 CACTGATTTATTGTCCGTTGATAATACCGTTAATAGTATTCTGGCGCCAACACCATCCAC 447
* *** ** **** * * * ** **** * **
consensus_8837#0 TACTTTGTATT---TTTGTTATGTCTCTTCTTTTCGCAATGACGTACGAATGT-ATATAT 862
consensus_8837#2 TACTTTGTATT---TTTGTTAAGTTTTTTCTTTTCCCAAAGACGTACGAATGT-ATATAA 380
consensus_8837#1 TACTTCAAATCAAATCCATCAAGTTCAATCCTCTCCACAAAAAGAACATTTGTCATACCA 507
***** ** * * * ** ** * ** * * * ** *** ***
consensus_8837#0 ATACATCTG--------------------------------------------------- 871
consensus_8837#2 AAACATCTG--------------------------------------------------- 389
consensus_8837#1 TAGTCTTTCTACATGTAGTGAATAAGTGTATGATACATTACTTGTTTTCATTTCAACGAA 567
* *
consensus_8837#0 ------------------------------------------------------------
consensus_8837#2 ------------------------------------------------------------
consensus_8837#1 TCTATGTTGTTATAATCCTTATTTACAAATCAATCTGTATTCATTCTGTACATAGGTGTA 627
consensus_8837#0 ------------------------------------
consensus_8837#2 ------------------------------------
consensus_8837#1 TAGTTTGTGTGTACATACATGTATATTCAGTTGATT 663
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||