These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8840#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 843 fasta sequence [CGAAATTTCCAGTATTTGTAGAATTTCTTCTTTCGGCATAACCTTGGCACTGTCCGTACCCATATTATATACATATATATATGCAATCCTCATTTAGGTTAATCATTTCGATTCTATATAAGAAAGAACCCTTTGCATATTTCATCATTACAAATCACTTCCCCACCCTCTTAACAGTCCCATTGTACGTTTTAGTTGCTCAAATTGTTTCTAGCAACTTCATGGGAACTGTGTTGTAAACTATACTCTTGTCATTAGTTTTTTGTGTGCTTCCATTTTCACTAAAATCATTTTTCGTTTGCGCGTGTTTGTACATCTACGAACATATAACCACTACTGCGCATGCCGTTCCGTCTATTCTTGTGTTAGCAAGTGAAATAGAGGCAGTCAGTTGTGTTTTAGAATTTTTTAAGATTTAACAACTATTTGCTAAAAAGATTATTACTATTATCATCATTATCAATACTATCACTAACTGACAGCTGATGTCTTTTTTTTCATTATTCCTATTTCTGCAAAACCACTGAACAACTCATATTTCAACAATAGAATAAGACTTATTCAATGGTCATGTTATGCATTTTAAAATTATTTGATTTGTTGAGCATTACATTAAAACTAATGTCATAAATAGAAAATATGTGATCT-AATGCCAATTTATGCGACTCATGTTTATACTTTGTTGNTGTAAGTAAATATTCACATGAATGCGAAAATGCCTTAATTCCACTGCTATCTCGTTNCTTTATT-ATCCATANCAT-AAC-ACCCATGATAGTGGTGT-ACTTACTAT-AACTATTTGAAANT-ATNGGNNCAG-TNTTG-TCCTAA-TTTCATAT-TATAGAGAGT] [+] EMBL CD082144 [CGAAATTTCCAGTATTTGTAGAATTTCTTCTTTCGGCATAACCTTGGCACTGTCCGTACCCATATTATATACATATATATATGCAATCCTCATTTAGGTTAATCATTTCGATTCTATATAAGAAAGAACCCTTTGCATATTTCATCATTACAAATCACTTCCCCACCCTCTTAACAGTCCCATTGTACGTTTTAGTTGCTCAAATTGTTTCTAGCAACTTCATGGGAACTGTGTTGTAAACTATACTCTTGTCATTAGTTTTTTGTGTGCTTCCATTTTCACTAAAATCATTTTTCGTTTGCGCGTGTTTGTACATCTACGAACATATAACCACTACTGCGCATGCCGTTCCGTCTATTCTTGTGTTAGCAAGTGAAATAGAGGCAGTCAGTTGTGTTTTAGAATTTTTTAAGATTTAACAACTATTTGCTAAAAAGATTATTACTATTATCATCATTATCAATACTATCACTAACTGACAGCTGATGTCTTTTTTTTCATTATTCCTATTTCTGCAAAACCACTGAACAACTCATATTTCAACAATAGAATAAGACTTATTCAATGGTCATGTTATGCATTTTAAAATTATTTGATTTGTTGAGCATTACATTAAAACTAATGTCATAAATAGAAAATATGTGATCTAAATGCC ATTTATGCGACTCATGTTTATACTTTGTTGNTGTAAGTAAATATTCACATGAATGCGAAAATGCCTTAANTNCACTGCTATCTCGTTNCTTTATT ATCCATANCAT AAC ACCCATGATAGTGGTGT ACTTACTAT AACTATTTGAAANT ATNGGNNCAG TNTTG TCCTAA TTTCATAT TATAG ] [+] EMBL CD079017 [ TTAGGTTAATCATTTCGATTCTATATAAGAAAGAACCCTTTGCATATTTCATCATTACAAATCACTTCCCCACCCTCTTAACAGTCCCATTGTACGTTTTAGTTGCTCAAATTGTTTCTAGCAACTTCATGGGAACTGTGTTGTAAACTATACTCTTGTCATTAGTTTTTTGTGTGCTTCCATTTTCACTAAAATCATTTTTCGTTTGCGCGTGTTTGTACATCTACGAACATATAACCACTACTGCGCATGCCGTTCCGTCTATTCTTGTGTTAGCAAGTGAAATAGAGGCAGTCAGTTGTGTTTTAGAATTTTTTAAGATTTAACAACTATTTGCTAAAAAGATTATTACTATTATCATCATTATCAATACTATCACTAACTGACAGCTGATGTCTTTTTTTTCATTATTCCTATTTCTGCAAAACCACTGAACAACTCATATTTCAACAATAGAATAAGACTTATTCAATGGTCATGTTATGCATTTTAAAATTATTTGATTTGTTGAGCATTACATTANAACTAATGTCATANATAGAAAATATGTGATCT AATGCCAATTTATGCGACTCATGTTTATACTTTGNTGNTG ] [+] EMBL CD078687 [ ATCATTACAAATCACTTCCCCACCCTCTTAACAGTCCCATTGTACGTTTTAGTTGCTCAAATTGTTTCTAGCAACTTCATGGGAACTGTGTTGTAAACTATACTCTTGTCATTAGTTTTTTGTGTGCTTCCATTTTCACTAAAATCATTTTTCGTTTGCGCGTGTTTGTACATCTACGAACATATAACCACTACTGCGCATGCCGTTCCGTCTATTCTTGTGTTAGCAAGTGAAATAGAGGCAGTCAGTTGTGTTTTAGAATTTTTTAAGATTTAACAACTATTTGCTAAAAAGATTATTACTATTATCATCATTATCAATACTATCACTAACTGACAGCTGATGTCTTTTTTTTCATTATTCCTATTTCTGCAAAACCACTGAACAACTCATATTTCAACAATAGAATAAGACTTATTCAATGGTCATGTTATGCATTTTAAAATTATTTGATTTGTTGAGCATTACATTAAAACTAATGTCATAAATAGAAAATATGTGATCT AATGCCAATTTATGCGACTCATGTTTATACTTTGTTGTTGTAAGTAAATATTCACATGAATGCGAAAATGCCCTAATTCCACTGCTATCTCGnt ] [-] EMBL CD075762 [ CATTTTTCGTTTGCGCGTGTTTGTACATCTACGAACATATAACCACTACTGCGCATGCCGTTCCGTCTATTCTTGTGTTAGCAAGTGAAATAGAGGCAGTCAGTTGTGTTTTAGAATTTTTTAAGATTTAACAACTATTTGCTAAAAAGATTATTACTATTATCATCATTATCAATACTATCACTAACTGACAGCTGATGTCTTTTTTTTCATTATTCCTATTTCTGCAAAACCACTGAACAACTCATATTTCAACAATAGAATAAGACTTATTCAATGGTCATGTTATGCATTTTAAAATTATTTGATTTGTTGAGCATTACATTAAAACTAATGTCATAAATAGAAAATATGTGATCT AATGCCAATTTATGCGACTCATGTTTATACTTTGTTGTTGTAAGTAAATATTCACATGAATGCGAAAATGCCTTAATTCCACTGCTATCTCGTTTCTTTATTAATCCATACAATAAACAACCAATGATAGTGGTGTAACTTACTATAAACTATTTGAAAATAATTGG TCAGTTTTTGTTCCTAATTTTCATATATATTAAGAGT] consensusID : consensus_8840#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 587 fasta sequence [AATACTTTGTTGTTGTAAGTAAATATTCACATGAATGCGAAAATGCCTTAATTCCACTGCTATCTCGTTTCTTTATTAATCCATACAATAAACAACCAATGATAGTGGTGTAACTTACTATAAACTATTTGAAAATAATTGGTCAGTTTTTGTTCCTAATTTTCATATATATTAAGAGTTATGCACATACCCGACTACTTCTCATGTTCCACCATTTATCCCGTGTTTTACACCGTGTGATACTGCCAGAAAAATTGATGATAAATATTACTTCGAAACTTTGTTAAGTTAGGTGTCATTGTGTTTTATTTCTTGTGTGTATTTGTGTACCTACATTATCGACTATCCTTAAACAGATGTTCAAACGAATTTGGCTGTATAATTTTGTTAGCCAAAAGATTTCGTGATAATCGATAACAGCACTGTGTTACCATTCTAGACTGCGTGATTTGTTCTGTTTTCTCTGTTGATTTTGTGTGTGCTTGCTTTATCTTAACTAGTCAATTATTCCCCTAGTAACTACTATCCTTTGCCGCATTCAAATTGGTTCAGTCATTAAAATACGTCATTTCCAACTGTGTAAAAAA] [-] EMBL CD073150 [AATACTTTGTTGTTGTAAGTAAATATTCACATGAATGCGAAAATGCCTTAATTCCACTGCTATCTCGTTTCTTTATTAATCCATACAATAAACAACCAATGATAGTGGTGTAACTTACTATAAACTATTTGAAAATAATTGGTCAGTTTTTGTTCCTAATTTTCATATATATTAAGAGTTATGCACATACCCGACTACTTCTCATGTTCCACCATTTATCCCGTGTTTTACACCGTGTGATACTGCCAGAAAAATTGATGATAAATATTACTTCGAAACTTTGTTAAGTTAGGTGTCATTGTGTTTTATTTCTTGTGTGTATTTGTGTACCTACATTATCGACTATCCTTAAACAGATGTTCAAACGAATTTGGCTGTATAATTTTGTTAGCCAAAAGATTTCGTGATAATCGATAACAGCACTGTGTTACCATTCTAGACTGCGTGATTTGTTCTGTTTTCTCTGTTGATTTTGTGTGTGCTTGCTTTATCTTAACTAGTCAATTATTCCCCTAGTAACTACTATCCTTTGCCGCATTCAAATTGGTTCAGTCATTAAAATACGTCATTTCCAACTGTGTAAAAAA] [-] EMBL CD073468 [ ACATACCCGACTACTTCTCATGTTCCACCATTTATCCCGTGTTTTACACCGTGTGATACTGCCAGAAAAATTGATGATAAATATTACTTCGAAACTTTGTTAAGTTAGGTGTCATTGTGTTTTATTTCTTGTGTGTATTTGTGTACCTACATTATCGACTATCCTTAAACAGATGTTCAAACGAATTTGGCTGTATAATTTTGTTAGCCAAAAGATTTCGTGATAATCGATAACAGCACTGTGTTACCATTTTAGACGGCGTGATTTGTTCTGTTTTCTCTGTTGATTTTGTGTGTGCTTGCTTTATCTTAACTAGTCAATTATTCCCCTAGTAACTACTATCCTTTGCCGCATTCAAATTGGTTCAGTCATTAAAATACGTCATTTCCAACTGTGTAAAAAA] consensusID : consensus_8840#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 523 fasta sequence [TTTTTTTGTGTGCTTCCATTTTCACTAAAATCATTTTTCGTTTGCGCGTGTTTGTACATCTACGAACATATAACCACTACTGCGCATCCCGTTCCGTCTATTCTTGTGTTAGCAAGTGAAATAGAGGCAGTCAGTTGTGTTTTAGAATTTTTTAAGATTTAACAACTATTTGCTAAAAAGATTATTACTATTATCATCATTATCAATACTATCACTAACTGACAGCTGATGTCTTTTTTTTCAATATTCCTATTTCTGCAAAACACTGAACAACTCATATTTCAACAATAGAATAAGACTTATTCAATGGTCATGTTATGCATTTTAAAATATTTGATTTGTTGAGCATTACATTAAACTAATGTCATAAAAAGAAAATATGTGATCTAATGCCAATTTTTGCGCCCATGTTTATACTTTGTTGTTGTAAGAAAAATCACATGGTGCGAAATGCCTTATTCACCCTGGGACCCGGGTCTTTATTAACCCCACAAAAACAACCACGGGTGGTGGGGTACCTACT] [+] EMBL AI559057 [TTTTTTTGTGTGCTTCCATTTTCACTAAAATCATTTTTCGTTTGCGCGTGTTTGTACATCTACGAACATATAACCACTACTGCGCATCCCGTTCCGTCTATTCTTGTGTTAGCAAGTGAAATAGAGGCAGTCAGTTGTGTTTTAGAATTTTTTAAGATTTAACAACTATTTGCTAAAAAGATTATTACTATTATCATCATTATCAATACTATCACTAACTGACAGCTGATGTCTTTTTTTTCAATATTCCTATTTCTGCAAAACACTGAACAACTCATATTTCAACAATAGAATAAGACTTATTCAATGGTCATGTTATGCATTTTAAAATATTTGATTTGTTGAGCATTACATTAAACTAATGTCATAAAAAGAAAATATGTGATCTAATGCCAATTTTTGCGCCCATGTTTATACTTTGTTGTTGTAAGAAAAATCACATGGTGCGAAATGCCTTATTCACCCTGGGACCCGGGTCTTTATTAACCCCACAAAAACAACCACGGGTGGTGGGGTACCTACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8840#0 CGAAATTTCCAGTATTTGTAGAATTTCTTCTTTCGGCATAACCTTGGCACTGTCCGTACC 60 consensus_8840#2 ------------------------------------------------------------ consensus_8840#1 ------------------------------------------------------------ consensus_8840#0 CATATTATATACATATATATATGCAATCCTCATTTAGGTTAATCATTTCGATTCTATATA 120 consensus_8840#2 ------------------------------------------------------------ consensus_8840#1 ------------------------------------------------------------ consensus_8840#0 AGAAAGAACCCTTTGCATATTTCATCATTACAAATCACTTCCCCACCCTCTTAACAGTCC 180 consensus_8840#2 ------------------------------------------------------------ consensus_8840#1 ------------------------------------------------------------ consensus_8840#0 CATTGTACGTTTTAGTTGCTCAAATTGTTTCTAGCAACTTCATGGGAACTGTGTTGTAAA 240 consensus_8840#2 ------------------------------------------------------------ consensus_8840#1 ------------------AATACTTTGTTGTTGTAAGTAAATATTCACATGAATGCGAAA 42 consensus_8840#0 CTATACTCTTGTCATTAGTTTTTTGTGTGCTTCCATTTTCACTAAAATCATTTTTCGTTT 300 consensus_8840#2 -----------------TTTTTTTGTGTGCTTCCATTTTCACTAAAATCATTTTTCGTTT 43 consensus_8840#1 ATGCCTTAATTCCACTGCTATCTCGT-TTCTTTATTAATCCATACAATAAACAACCAATG 101 * * * ** * *** * ** ** *** * * * consensus_8840#0 GCGCGTGTTTGTACATCTACGAAC-ATATAACCACTACTGCGCATGCCGTTCCGTCTATT 359 consensus_8840#2 GCGCGTGTTTGTACATCTACGAAC-ATATAACCACTACTGCGCATCCCGTTCCGTCTATT 102 consensus_8840#1 ATAGTGGTGTAACTTACTATAAACTATTTGAAAATAATTGGTCAGTTTTTGTTCCTAATT 161 ** * *** *** ** * * * * ** ** * *** consensus_8840#0 CTTGTGT-TAGCAAGTGAAATAGAGGCAGTCAGTTG-------TGTTTTAGAATTTTTTA 411 consensus_8840#2 CTTGTGT-TAGCAAGTGAAATAGAGGCAGTCAGTTG-------TGTTTTAGAATTTTTTA 154 consensus_8840#1 TTCATATATATTAAGAGTTATGCACATACCCGACTACTTCTCATGTTCCACCATTTATCC 221 * * * ** *** * ** * * * * **** * **** * consensus_8840#0 AG-ATTTAACAAC-TAT----TTGCTAAAAAGATTATTACTATTATCATCATTATCAATA 465 consensus_8840#2 AG-ATTTAACAAC-TAT----TTGCTAAAAAGATTATTACTATTATCATCATTATCAATA 208 consensus_8840#1 CGTGTTTTACACCGTGTGATACTGCCAGAAAAATTGATG--ATAAATATTACT-TCGAAA 278 * *** *** * * * *** * *** *** * ** * ** * * ** * * consensus_8840#0 CTATCACTAACTGACAGCTGATGTCTTTTTTTTCATTATTCCTATTTCTGCAAAACCACT 525 consensus_8840#2 CTATCACTAACTGACAGCTGATGTCTTTTTTTTCAATATTCCTATTTCTGCAAAAC-ACT 267 consensus_8840#1 CTTTGTTAAGTTAGGTGTCATTGTGTTTTATTTC-TTGTGTGTATTTGTGTACCTACATT 337 ** * * * * *** **** **** * * ***** ** * * * consensus_8840#0 GAACAACTCATATTTCAACAATAGAATAAGACTTATTCAATGGTCATGTTATGCATTTTA 585 consensus_8840#2 GAACAACTCATATTTCAACAATAGAATAAGACTTATTCAATGGTCATGTTATGCATTTTA 327 consensus_8840#1 -ATCGACT-ATCCTTAAACAG-ATGTTCAAACGAATTTGGCTGTATAATTTTGTTAGCCA 394 * * *** ** ** **** * * * ** *** ** ** ** * consensus_8840#0 AAATTATTTGATTTGTTGAGCATT-ACATTAAAACTAATGTCATAAATAGAAAATATGTG 644 consensus_8840#2 AAAT-ATTTGATTTGTTGAGCATT-ACATTAAA-CTAATGTCATAAAAAGAAAATATGTG 384 consensus_8840#1 AAA------GATTTCGTGATAATCGATAACAGCACTG-TGTTACCATTCTAGACTGCGTG 447 *** ***** *** ** * * * ** *** * * * * * *** consensus_8840#0 ATCTAATGCCAATTTATGCGACTCATGTTTATACTTTGTTGNTGTAAGTAAATATTCACA 704 consensus_8840#2 ATCTAATGCCAATTTTTGCG-CCCATGTTTATACTTTGTTGTTGTAAGAAAAA--TCACA 441 consensus_8840#1 ATTTG-TTCTGTTTTCTCTG--TTGATTTTGTGTGTGCTTGCTTTATCTTAACTAGTCAA 504 ** * * * *** * * *** * * *** * ** ** * consensus_8840#0 TGAATGCGAAAATGCCTTAATTCCACTGCTATCTCGTTNCTTTATTATCCATANCATAAC 764 consensus_8840#2 TGG-TGCGAAA-TGCCTTATTCACCCTGGGACC-CGGGTCTTTATTAACCCCACAAAAAC 498 consensus_8840#1 TTATTCCCCTAGTAACTACTATCCTTTGCCGCATTCAAATTGGTTCAGTCATTAAAATAC 564 * * * * * ** * ** * * * * * ** consensus_8840#0 ACCCATGA-TAGTGGTGTACTTACTATAACTATTTGAAANTATNGGNNCAGTNTTGTCCT 823 consensus_8840#2 AACCACGGGTGGTGGGGTACCTACT----------------------------------- 523 consensus_8840#1 G-TCATTTCCAACTGTGTAAAAAA------------------------------------ 587 ** * *** * consensus_8840#0 AATTTCATATTATAGAGAGT 843 consensus_8840#2 -------------------- consensus_8840#1 -------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||