These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8844#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 784 fasta sequence [AAATATGAACCGGGTGTATTGAATAATTCGCTATGCCATTTTTTTAGACTTTCTCAAGAAATGAATAACGACGACGTAATATGGCACACTATCAACCATTCATTCTGTTCTTTTGTTGTCAAAACTAAAACAGGAAGGTTTTGCAGAAATGATGACAATGTGACAGGATTGTGTAATAGACATTCTTGCCCATTAGCTAACTCACAGTATGCCACTATAAAAGAAAGAGATGGTATCATCTACTTGTTTGTGAAGGAACCTGAACGCATACCTTATCCTGGTAAACAATGGGAGCGGATTAAA-TTGCGCCGAAATAAAGATCAAGCTCTAAAACAA-ATCAAAGAGCACTTACTGTATTGGGATAAATGGATAATAAGCCGTGTTAAGCAGAGATTCTTCCGTACAAGAGAATATCTTAAAAATATGCGACGTTTAGCCTTATCAAGACAAAAGAAGTTGGAACCTATTAATCGTACGGTTGAAAAACGTGAATTAAGAAGAGAAGCTAAAGCATTACGTGTAGCACGCATCGAACGTACTGTAGAACAAGAACTCTTAGAAAGATTACG-CGCATCAACATCTTCCAAGGAAATATATAACATAGATCAGTCTGCCTTTGAAAAGGCTCTAGAAGCTGAAGAAATAAATGAAGAATCTGATGAGGAATACGAGGAGGATGAAGAAGAAATCGTCTACACTTCAGGATCTGATGTTGAAGACATTGAGGATATCGGAGTGATTGATGAAGAAAGTGAAGAAGAGGAAGCTGAACATAATCTTGTCC] [+] EMBL CD201721 [AAATATGAACCGGGTGTATTGAATAATTCGCTATGCCATTTTTTTAGACTTTCTCAAGAAATGAATAACGACGACGTAATATGGCACACTATCAACCATTCATTCTGTTCTTTTGTTGTCAAAACTAAAACAGGAAGGTTTTGCAGAAATGATGACAATGTGACAGGATTGTGTAATAGACATTCTTGCCCATTAGCTAACTCACAGTATGCCACTATAAAAGAAAGAGATGGTATCATCTACTTGTTTGTGAAGGAACCTGAACGCATACCTTA ] [+] EMBL SMGST [ TTTTGCAGAAATGATGACAATGTGACAGGATTGTGTAATAGACATTCTTGCCCATTAGCTAACTCACAGTATGCCACTATAAAAGAAAGAGATGGTATCATCTACTTGTTTGTGAAGGAACCTGAACGCATACCTTATCCTGGTAAACAATGGGAGCGGATTAAA TTGCGCCGAAATAAAGATCAAGCTCTAAAACAA ATCAAAGAGCACTTACTGTATTGGGATAAATGGATAATAAGCCGTGTTAAGCAGAGATTCTTCCGTACAAGAGAATATCTTAAAAATATGCGACGTTTAGCCTTATCAAGACAAAAGAAGTTGGAACCTATTAATCGTACGGTTGAAAAACGTGAATTAAGAAGAGAAGCTAAAGCATTACGTGTAGCACGCATCGAACGTACTGTAGAACAAGAACTCTTAGAAAGATTACG CGCATCAACATCTTCCAAGGAAATATATAACATAGATCAGTCTGCCTTTGAAAAGGCTCTAGAAGCTGAAGAAATAAATGAAGAATCTGATGAGGAATACGAGGAGGATGAAGAAGAAATCGTCTACACTTCAGGATCTGATGTTGAAGACATTGAGGATATCGGAGTGATTGATGAAGAAAGTGAAGAAGAGGAAGCTGAACATAATCTTGTC ] [-] EMBL CD147713 [ AAGAGATGGTATCATCTACTGATTTGTGAAGGAACCTGAACGCATACCTTATCCTGGT AACGATGGGAGCGGATTAAACTTGCGCCGAAATAAAGATCAAGCTGTTAAACAAGATCAAAGAGCACTTACTGTATTGGGATAAATGGATAATAAGCCGTGTGAAGCAGAGATTCTTCCGTACAAGAGAATATCTTAAAAATATGCGACGTTTAGCCTTATCAAGACAAAAGAAGTTGGAACCTATTAATCGTACGGTTGACAAACGTGAATTAAGAAGAGAAGCTAAAGCATTACGTGTAGCACGCATCGAACGTACTGTAGAACAAGAACTCTTAGAAAGATTACGCCGCATCAACATCTTCCAAGGAAATATATAACATAGATCAGTCTGCCTTTGAAAAGGCTCTAGAAGCTGA ] [-] EMBL CD073152 [ GAGCGGATTAAA TTGCGCCGAAATAAAGATCAAGCTCTAAAACAA ATCAAAGAGCACTTACTGTATTGGGATAAATGGATAATAAGCCGTGTTAAGCAGAGATTCTTCCGTACAAGAGAATATCTTAAAAATATGCGACGTTTAGCCTTATCAAGACAAAAGAAGTTGGAACCTATTAATCGTACGGTTGAAAAACGTGAATTAAGAAGAGAAGCTAAAGCATTACGTGTAGCACGCATCGAACGTACTGTAGAACAAGAACTCTTAGAAAGATTACG CGCATCAACATCTTCCAAGGAAATATATAACATAGATCAGTCTGCCTTTGAAAAGGCTCTAGAAGCTGAAGAAATAAATGAAGAATCTGATGAGGAATACGAGGAGGATGAAGAAGAAATCGTCTACACTTCAGGATCTGATGTTGAAGACATTGAGGATATCGGAGTGATTGATGAAGAAAGTGAAGAAGAGGAAGCTGAACATAATCTTGTCC] [-] EMBL CD077278 [ GTTGAAAAACGTGAATTAAGAAGAGAAGCTAAAGCATTACGTGTAGCACGCATCGAACGTACTGTAGAACAAGAACTCTTAGAAAGATTACG CGCATCAACATCTTCCAAGGAAATATATAACATAGATCAGTCTGCCTTTGAAAAGGCTCTAGAAGCTGAAGAAATAAATGAAGAATCTGATGAGGAATACGAGGAGGATGAAGAAGAAATCGTCTACACTTCAGGATCTGATGTTGAAGACATTGAGGATATCGGAGTGATTGATGAAGAAAGTGAAGAAGAGGAAGCTGAACATAATCTTGTCC] consensusID : consensus_8844#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 622 fasta sequence [TAATTCGCTATGACTTTCTCAAGAAATGAATAACGACGACGTAATATGGCACACTATCAACCATTCATTCTGTTCTTTTGTTGTCAAAACTAAAACAGGAAGGTTTTGCAGAAATGATGACAATGTGACAGGATTGTGTAATAGACATTCTTGCCCATTAGCTAACTCACAGTATGCCACTATAAAAGAAAGAGATGGTATCATCTACTTGTTTGTGAAGGAACCTGAACGCATACCTTATCCTGGTAAACAATGGGAGCGGATTAAATTGCGCCGAAATAAAGATCAAGCTCTAAAACAAATCAAAGAGCACTTACTGTATTGGGATAAATGGATAATAAGCCGTGTTAAGCAGAGATTCTTCCGTACAAGAGAATATCTTAAAAATATGCGACGTTTAGCCTTATCAAGACAAAAGAAGTTGGAACCTATTAATCGTACGGTTGAAAAACGTGAATTAAGAAGAGAAGCTAAAGCATTACGTGTAGCACGCATCGAACGTACTGTAGAACAAGAACTCTTAGAAAGATTACGCGCATCAACATCTTCCAAGGAAATATATAACATAGATCAGTCTGCCTTTGAAAGGCTCTAGAAGCTGAAGAATAAATGAAGAATCTGA] [+] EMBL CD078689 [TAATTCGCTATGACTTTCTCAAGAAATGAATAACGACGACGTAATATGGCACACTATCAACCATTCATTCTGTTCTTTTGTTGTCAAAACTAAAACAGGAAGGTTTTGCAGAAATGATGACAATGTGACAGGATTGTGTAATAGACATTCTTGCCCATTAGCTAACTCACAGTATGCCACTATAAAAGAAAGAGATGGTATCATCTACTTGTTTGTGAAGGAACCTGAACGCATACCTTATCCTGGTAAACAATGGGAGCGGATTAAATTGCGCCGAAATAAAGATCAAGCTCTAAAACAAATCAAAGAGCACTTACTGTATTGGGATAAATGGATAATAAGCCGTGTTAAGCAGAGATTCTTCCGTACAAGAGAATATCTTAAAAATATGCGACGTTTAGCCTTATCAAGACAAAAGAAGTTGGAACCTATTAATCGTACGGTTGAAAAACGTGAATTAAGAAGAGAAGCTAAAGCATTACGTGTAGCACGCATCGAACGTACTGTAGAACAAGAACTCTTAGAAAGATTACGCGCATCAACATCTTCCAAGGAAATATATAACATAGATCAGTCTGCCTTTGAAAGGCTCTAGAAGCTGAAGAATAAATGAAGAATCTGA] consensusID : consensus_8844#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 413 fasta sequence [ACTTTCTCAAGAAATGAATAACGACGACGTAATATGGCACACTATCAACCATTCATTCTGTTCTTTTGTTGTCAAAACTAAAACAGGAAGGTTTTGCAGAAATGATGACAATGTGACAGGATTGTGTAATAGACATTCTTGCCCATTAGCTAACTCACAGTATGCCACTATAAAGAAAGAGATGGTATCATCTACTTGTTTGTGAAGGAACCTGAACGCATACCTTATCCTGGTAAACATGGGAGCGGATTAATTGCGCGAATAATGATCAGCTCTAAACAATCAAGAGCACTACTGTATGGGATAATGATAATAGCCGTGTAAGCAGGATTCTCCGTACAAGAGATACTAAAATAGCGACGTTTAGCTTATCAGACAAAGAGTGGACTATTATCGTACGTTGAAACGTGATT] [+] EMBL AI168858 [ACTTTCTCAAGAAATGAATAACGACGACGTAATATGGCACACTATCAACCATTCATTCTGTTCTTTTGTTGTCAAAACTAAAACAGGAAGGTTTTGCAGAAATGATGACAATGTGACAGGATTGTGTAATAGACATTCTTGCCCATTAGCTAACTCACAGTATGCCACTATAAAGAAAGAGATGGTATCATCTACTTGTTTGTGAAGGAACCTGAACGCATACCTTATCCTGGTAAACATGGGAGCGGATTAATTGCGCGAATAATGATCAGCTCTAAACAATCAAGAGCACTACTGTATGGGATAATGATAATAGCCGTGTAAGCAGGATTCTCCGTACAAGAGATACTAAAATAGCGACGTTTAGCTTATCAGACAAAGAGTGGACTATTATCGTACGTTGAAACGTGATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8844#0 AAATATGAACCGGGTGTATTGAATAATTCGCTATGCCATTTTTTTAGACTTTCTCAAGAA 60 consensus_8844#1 -----------------------------------TAATTCGCTATGACTTTCTCAAGAA 25 consensus_8844#2 -----------------------------------------------ACTTTCTCAAGAA 13 ************* consensus_8844#0 ATGAATAACGACGACGTAATATGGCACACTATCAACCATTCATTCTGTTCTTTTGTTGTC 120 consensus_8844#1 ATGAATAACGACGACGTAATATGGCACACTATCAACCATTCATTCTGTTCTTTTGTTGTC 85 consensus_8844#2 ATGAATAACGACGACGTAATATGGCACACTATCAACCATTCATTCTGTTCTTTTGTTGTC 73 ************************************************************ consensus_8844#0 AAAACTAAAACAGGAAGGTTTTGCAGAAATGATGACAATGTGACAGGATTGTGTAATAGA 180 consensus_8844#1 AAAACTAAAACAGGAAGGTTTTGCAGAAATGATGACAATGTGACAGGATTGTGTAATAGA 145 consensus_8844#2 AAAACTAAAACAGGAAGGTTTTGCAGAAATGATGACAATGTGACAGGATTGTGTAATAGA 133 ************************************************************ consensus_8844#0 CATTCTTGCCCATTAGCTAACTCACAGTATGCCACTATAAAAGAAAGAGATGGTATCATC 240 consensus_8844#1 CATTCTTGCCCATTAGCTAACTCACAGTATGCCACTATAAAAGAAAGAGATGGTATCATC 205 consensus_8844#2 CATTCTTGCCCATTAGCTAACTCACAGTATGCCACTATAAA-GAAAGAGATGGTATCATC 192 ***************************************** ****************** consensus_8844#0 TACTTGTTTGTGAAGGAACCTGAACGCATACCTTATCCTGGTAAACAATGGGAGCGGATT 300 consensus_8844#1 TACTTGTTTGTGAAGGAACCTGAACGCATACCTTATCCTGGTAAACAATGGGAGCGGATT 265 consensus_8844#2 TACTTGTTTGTGAAGGAACCTGAACGCATACCTTATCCTGGTAAACA-TGGGAGCGGATT 251 *********************************************** ************ consensus_8844#0 AAATTGCGCCGAAATAAAGATCAAGCTCTAAAACAAATCAAAGAGCACTTACTGTATTGG 360 consensus_8844#1 AAATTGCGCCGAAATAAAGATCAAGCTCTAAAACAAATCAAAGAGCACTTACTGTATTGG 325 consensus_8844#2 AA-TTGCGC--GAATAATGATCA-GCTCTAAAC--AATCAA-GAGCACT-ACTGTAT-GG 302 ** ****** ***** ***** ******** ****** ******* ******* ** consensus_8844#0 GATAAATGGATAATAAGCCGTGTTAAGCAGAGATTCTTCCGTACAAGAGAATATCTTAAA 420 consensus_8844#1 GATAAATGGATAATAAGCCGTGTTAAGCAGAGATTCTTCCGTACAAGAGAATATCTTAAA 385 consensus_8844#2 GATAA--TGATAATA-GCCGTGT-AAGCAG-GATTCT-CCGTACAAGAGA-TACT---AA 352 ***** ******* ******* ****** ****** ************ ** ** consensus_8844#0 AATATGCGACGTTTAGCCTTATCAAGACAAAAGAAGTTGGAACCTATTAATCGTACGGTT 480 consensus_8844#1 AATATGCGACGTTTAGCCTTATCAAGACAAAAGAAGTTGGAACCTATTAATCGTACGGTT 445 consensus_8844#2 AATA-GCGACGTTTAGC-TTATCA-GACAAAGAG---TGGA--CTATTA-TCGTACGTT- 402 **** ************ ****** ****** **** ****** ******* * consensus_8844#0 GAAAAACGTGAATTAAGAAGAGAAGCTAAAGCATTACGTGTAGCACGCATCGAACGTACT 540 consensus_8844#1 GAAAAACGTGAATTAAGAAGAGAAGCTAAAGCATTACGTGTAGCACGCATCGAACGTACT 505 consensus_8844#2 --GAAACGTGATT----------------------------------------------- 413 ******** * consensus_8844#0 GTAGAACAAGAACTCTTAGAAAGATTACGCGCATCAACATCTTCCAAGGAAATATATAAC 600 consensus_8844#1 GTAGAACAAGAACTCTTAGAAAGATTACGCGCATCAACATCTTCCAAGGAAATATATAAC 565 consensus_8844#2 ------------------------------------------------------------ consensus_8844#0 ATAGATCAGTCTGCCTTTGAAAAGGCTCTAGAAGCTGAAGAAATAAATGAAGAATCTGAT 660 consensus_8844#1 ATAGATCAGTCTGCCTTTGAAA-GGCTCTAGAAGCTGAAGAA-TAAATGAAGAATCTGA- 622 consensus_8844#2 ------------------------------------------------------------ consensus_8844#0 GAGGAATACGAGGAGGATGAAGAAGAAATCGTCTACACTTCAGGATCTGATGTTGAAGAC 720 consensus_8844#1 ------------------------------------------------------------ consensus_8844#2 ------------------------------------------------------------ consensus_8844#0 ATTGAGGATATCGGAGTGATTGATGAAGAAAGTGAAGAAGAGGAAGCTGAACATAATCTT 780 consensus_8844#1 ------------------------------------------------------------ consensus_8844#2 ------------------------------------------------------------ consensus_8844#0 GTCC 784 consensus_8844#1 ---- consensus_8844#2 ---- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||