These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8866#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 967 fasta sequence [ATCAAATTCTAATACTAATACTACTACTAATAATAATGTTACTACTGGAAAAACCTACTGTAAATAGTATCAATGTTTTATCAAATTCAAATAATTCTGTATATGATAGTCAAACTATTTTAACCGATTGCATTTTAGGTATATTTCGATTTTTAGTTAATGTTTCACATAATGAATTCGCTAGTGAACGTCTTGGTGCTTGTTCAGGTTTCCTAGAAACTATTTTTGATTGCCTACTCAAGTTGCCTGATCGTTTGCCTGGAACAAAAAGATTTGATGTGATTGTTTTAGTGCTTTGTCTTTTGGTAAATATGTGTGAACATTGTCCTGAAAATCGTACCCGAATTGTATATTTGGATATTACAAAATCATGTCTTAAACAAGGCTCTCCAACGAATGTGAAAGATGTTAAATATATCGATACATATGATGATGAAGAGGAAGATGATGATGACGACGTAAATACAGATACAAATACTTCACGACAAGTTGTAACCACATCTGCACTTGACGAACTCATACAACTATTTCTCACTCGAGAAGAATGCGCACGTAACCATGATTTCGAGAGAGATGATGATGAAGCTATGGCAGCTGCGGCTGCCCGTAAACGTTCTGAAGAATTAGAAGATTTTGAAAATAATTCTAAACAATTACGCCCAGGTTATGCTAATCCTACTGTCGAAGAAGCTGGCTTGAAATGGCGTTTAATAGAGGATCGAAGAGCAATGAATCTGAATAATAGAGGATTATTAGGTCGGAATAAAAGACGATTGTACCGTAAACAAAAGTGTAAAAGTATTGGTAATAAACCACGGCCAAATATAGGGGGTTCCGATGAAGACGAGGAGGATTCCGATGATGTAGATGACTTGAATGATGATGATGATTGCATTCGAGATGATGATTTGGAACAAAATGATGAAGGTGATGATGATGACGAGGACGACGATGATTATTGATAATC] [+] EMBL CD064560 [ATCAAATTCTAATACTAATACTACTACTAATAATAATGTTACTACTGGAAAAACCTACTGTAAATAGTATCAATGTTTTATCAAATTCAAATAATTCTGTATATGATAGTCAAACTATTTTAACCGATTGCATTTTAGGTATATTTCGATTTTTAGTTAATGTTTCACATAATGAATTCGCTAGTGAACGTCTTGGTGCTTGTTCAGGTTTCCTAGAAACTATTTTTGATTGCCTACTCAAGTTGCCTGATCGTTTGCCTGGAACAAAAAGATTTGATGTGATTGTTTTAGTGCTTTGTCTTTTGGTAAATATGTGTGAACATTGTCCTGAAAATCGTACCCGAATTGTATATTTGGATATTACAAAATCATGTCTTAAACAAGGCTCTCCAACGAATGTGAAAGATGTTAAATATATCGATACATATGATGATGAAGAGGAAGATGATGATGACGACGTAAATACAGATACAAATACTTCACGACAAGTTGTAACCACATCTGCACTTGACGAACTCATACAACTATTTCTCACTCGAGAAGAATGCGCACGTAACCATGATTTCGAGAGAGATGATGATGAAGCTATGGCAGCTGC ] [+] EMBL CD064547 [ATCAAATTCTAATACTAATACTACTACTAATAATAATGTTACTA TGGAAAAACCTACTGTAAATAGTATCAATGTTTTATCAAATTCAAATAATTCTGTATATGATAGTCAAACTATTTTAACCGATTGCATTTTAGGTATATTTCGATTTTTAGTTAATGTTTCACATAATGAATTCGCTAGTGAACGCCTTGGTGCTTGTTCAGGTTTCCTAGAAACTATTTTTGATTGCCTACTCAAGT ] [+] EMBL CD087725 [ ATACATATGATGATGAAGAGGAAGATGATGATGACGACGTAAATACAGATACAAATACTTCACGACAAGTTGTAACCACATCTGCACTTGACGAACTCATACAACTATTTCTCACTCGAGAAGAATGCGCACGTAACCATGATTTCGAGAGAGATGATGATGAAGCTATGGCAGCTGCGGCTGCCCGTAAACGTTCTGAAGAATTAGAAGATTTTGAAAATAATTCTAAACAATTACGCCCAGGTTATGCTAATCCTACTGTCGAAGAAGCTGGCTTGAAATGGCGTTTAATAGAGGATCGAAGAGCAATGAATCTGAATAATAGAGGATTATTAGGTCGGAATAAAAGACGATTGTACCGTAAACAAAAGTGTAAAAGTATTGGTAATAAACCACGGCCAAATATAGGGGGTTCCGATGAAGACGAGGAGGATTCCGATGATGTAGATGACTTGAATGATGATGATGATTGCATTCGAGATGATGATTTGGAACAAAATGATGAAGGTGATGATGATGACGAGGACGACGATGATTATTGATAATC] [+] EMBL CD183378 [ ACTTGACGAACTCATACAACTATTTCTCACTCGAGAAGAATGCGCACGTAACCATGATTTCGAGAGAGATGATGATGAAGCTATGGCAGCTGCGGCTGCCCGTAAACGTTCTGAAGAATTAGAAGATTTTGAAAATAATTCTAAACAATTACGCCCAGGTTATGCTAATCCTACTGTCGAAGAAGCTGGCTTGAAATGGCGTTTAATAGAGGATCGAAGAGCAATGAATCTGAATAATAGAGGATTATTAGGTCGGAATGAAAAACGATTGTACCGTAAACAAAAGTGTAAAAGTATTGTAAATAAACAACGGCAAAATATAGGGGGTTCCGATGAAGACGAGGAGGATTCCGATGATGTAGATGACTTGAATGATGATGATGATTGCATTGAAGATGATGATTTGGAAGAGAATGATGgtg ] consensusID : consensus_8866#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 623 fasta sequence [TGTAAAAGTATTGTAAATAGACAACGGCAAAATATAGGGGGTTCCGATGAAGACGAGGAGGATTCCGATGGTGTAGATGACTTGAATGATGATGATGATTGCATTGAAGATGATGATTTGGAAGAGAATGATGGTGATGATGATGACGAGGACGACGATGATGATGAAAGCGTTGGCAGTGGTGCAGATGTTGAATTTGTCGCTGACACACAAGAGGAACAAGAAAAGTTAGCCAAAAGTATGTCTCAAGCCCAACAACATATGGAAGATTCGGTGGTGGCTGCTTATGCTGCCCTCCTACTTGGCTGTATTCTACAATCAAGTCCACGTTATACTGATCGTATTCGATCTAAATTACCAGATGGTCAATTTCGTCCATTAGCAATTATGTTAGCTAAACTACTTAGCTTTTTATCTTTAACCAAAGGTGTAGGATCTTCAGGTTCTGAATCTATTCTACGTATTGTTAGAATATTAGAAGCACAAGATAAACAAAATACAAAAATATCAACCGATGATAATGATGGTGGTGACAGTTAATATATGTGTATAATTACTATTCCTTTGCTTCATTTTTGATATTCCTTTGTTTTTTGTCTATGTTTATCATGTGTTTTATTTGT] [+] EMBL CD147106 [TGTAAAAGTATTGTAAATAGACAACGGCAAAATATAGGGGGTTCCGATGAAGACGAGGAGGATTCCGATGGTGTAGATGACTTGAATGATGATGATGATTGCATTGAAGATGATGATTTGGAAGAGAATGATGGTGATGATGATGACGAGGACGACGATGATGATGAAAGCGTTGGCAGTGGTGCAGATGTTGAATTTGTCGCTGACACACAAGAGGAACAAGAAAAGTTAGCCAAAAGTATGTCTCAAGCCCAACAACATATGGAAGATTCGGTGGTGGCTGCTTATGCTGCCCTCCTACTTGGCTGTATTCTACAATCAAGTCCACGTTATACTGATCGTATTCGATCTAAATTACCAGATGGTCAATTTCGTCCATTAGCAATTATGTTAGCTAAACTACTTAGCTTTTTATCTTTAACCAAAGGTGTAGGATCTTCAGGTTCTGAATCTATTCTACGTATTGTTAGAATATTAGAAGCACAAGATAAACAAAATACAAAAATATCAACCGATGATAATGATGGTGGTGACAGTTAATATATGTGTATAATTACTATTCCTTTGCT ] [+] EMBL CD197068 [ AAGTTAGCCAAAAGTATGTCTCAAGCCCAACAACATATGGAAGATTCGGTGGTGGCTGCTTATGCTGCCCTCCTACTTGGCTGTATTCTACAATCAAGTCCACGTTATACTGATCGTATTCGATCTAAATTACCAGATGGTCAATTTCGTCCATTAGCAATTATGTTAGCTAAACTACTTAGCTTTTTATCTTTAACCAAAGGTGTAGGATCTTCAGGTTCTGAATCTATTCTACGTATTGTTAGAATATTAGAAGCACAAGATAAACAAAATACAAAAATATCAACCGATGATAATGATGGTGGTGACAGTTAATATATGTGTATAATTACTATTCCTTTGCTTCATTTTTGATATTCCTTTGTTTTTTGTCTATGTTTATCATGTGTTTTATTTGT] consensusID : consensus_8866#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 166 fasta sequence [GGATCATGCACTATCGGTCCTATTTCTCACTCGAGAAGAATGCGCACGTAACCATGATTTCGAGAGAGATGATGATGAAGCTATGGCAGCTGCGGCTGCCCGTAAACGTTCTGAAGAATTAGAAGATTTTGAAAATAATTCTAAACAATTACGCCCAGGTTATGCT] [+] EMBL CD062460 [GGATCATGCACTATCGGTCCTATTTCTCACTCGAGAAGAATGCGCACGTAACCATGATTTCGAGAGAGATGATGATGAAGCTATGGCAGCTGCGGCTGCCCGTAAACGTTCTGAAGAATTAGAAGATTTTGAAAATAATTCTAAACAATTACGCCCAGGTTATGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8866#0 ATCAAATTCTAATACTAATACTACTACTAATAATAATGTTACTACTGGAAAAACCTACTG 60 consensus_8866#2 ------------------------------------------------------------ consensus_8866#1 ------------------------------------------------------------ consensus_8866#0 TAAATAGTATCAATGTTTTATCAAATTCAAATAATTCTGTATATGATAGTCAAACTATTT 120 consensus_8866#2 ------------------------------------------------------------ consensus_8866#1 ------------------------------------------------------------ consensus_8866#0 TAACCGATTGCATTTTAGGTATATTTCGATTTTTAGTTAATGTTTCACATAATGAATTCG 180 consensus_8866#2 ------------------------------------------------------------ consensus_8866#1 ------------------------------------------------------------ consensus_8866#0 CTAGTGAACGTCTTGGTGCTTGTTCAGGTTTCCTAGAAACTATTTTTGATTGCCTACTCA 240 consensus_8866#2 ------------------------------------------------------------ consensus_8866#1 ------------------------------------------------------------ consensus_8866#0 AGTTGCCTGATCGTTTGCCTGGAACAAAAAGATTTGATGTGATTGTTTTAGTGCTTTGTC 300 consensus_8866#2 ------------------------------------------------------------ consensus_8866#1 ------------------------------------------------------------ consensus_8866#0 TTTTGGTAAATATGTGTGAACATTGTCCTGAAAATCGTACCCGAATTGTATATTTGGATA 360 consensus_8866#2 ------------------------------------------------------------ consensus_8866#1 ------------TGTAAAAGTATTGT----AAATAGACAACGGCAAAATATAGGGGGTTC 44 consensus_8866#0 TTACAAAATCATGTCTTAAACAAGGCTCTCCAACGAATGTGAAAGATGTTAAATATATCG 420 consensus_8866#2 ------------------------------------------------------------ consensus_8866#1 CGATGAAGACGAGGAG-GATTCCGATGGTGTAGATGACTTGAATGATGATGATGATTGCA 103 consensus_8866#0 ATACATATGATGATGAAGAGGAAGATGATGATGACGACGTAAATACAGATACAAATACTT 480 consensus_8866#2 ------------------------------------------------------------ consensus_8866#1 TTGAAGATGATGATTTGGAAGAGAATGATGGTGATGATGATGACGAGGACGACGATGATG 163 consensus_8866#0 CACGACAAGTTGTAACCACATCTGCACTTGACGAACTCATACAACTATTTCTCACTCGAG 540 consensus_8866#2 -------------------------GGATCATGCACTATCGGTCCTATTTCTCACTCGAG 35 consensus_8866#1 ATGAAAGCGTTGGCAGTGGTGCAGATGTTGAATTTGTCGCTGACACACAAGAGGAACAAG 223 * * * * * ** consensus_8866#0 AAGAATGCGCACGTAACCATGATTTCGAGAGAGATGATGATGAAGCTATGGCAGCTGCGG 600 consensus_8866#2 AAGAATGCGCACGTAACCATGATTTCGAGAGAGATGATGATGAAGCTATGGCAGCTGCGG 95 consensus_8866#1 AAAAGTTAGC-CAAAAGTATG-TCTCAAGCCCAACAAC-ATATGGAAGATTCGGTGGTGG 280 ** * * ** * ** *** * ** ** * * ** * * * * ** consensus_8866#0 CTGCCCGTAAACGTTCTGAAGAATTAGAAGATTTTGAAAATAATTCTAAACAATTACGCC 660 consensus_8866#2 CTGCCCGTAAACGTTCTGAAGAATTAGAAGATTTTGAAAATAATTCTAAACAATTACGCC 155 consensus_8866#1 CTGCTTATGC-TGCCCTCCTACTTGGCTGTATTCTACAATCAAGTCCACGTTATACTGAT 339 **** * * ** * *** * ** ** ** * ** * consensus_8866#0 CAGGTTATG-CTAATCCTACTGTCGAAGAAGCTGGCTTGAAATGGCGTTTAATAGAGGAT 719 consensus_8866#2 CAGGTTATG-CT------------------------------------------------ 166 consensus_8866#1 CGTATTCGATCTAAATTACCAGATGGTCAATTTCGTCCATTAGCAATTATGTTAGCTAAA 399 * ** ** consensus_8866#0 CGAAG-AGCAATGAATCTGAATAATAGAGGATTATTAGGTCGGAATAAAAGACGATTGTA 778 consensus_8866#2 ------------------------------------------------------------ consensus_8866#1 CTACTTAGCTTTTTATCTTTAACCAAAGGTGTAGGATCTTCAGGTTCTGAATCTATTCTA 459 consensus_8866#0 CCGTAAACAAAAGTGTAAAAGTATTGGTAATAAACCACGGCCAAATATAGGGGGTTCCGA 838 consensus_8866#2 ------------------------------------------------------------ consensus_8866#1 CGTATTGTTAGAATATTAGAA-GCACAAGATAAACAAAATACAAAAATATCAACCGATGA 518 consensus_8866#0 TGAAGACGAGGAGGATTCCGATGATGTAGATGACTTGAATGATGATGATGATTGCATTCG 898 consensus_8866#2 ------------------------------------------------------------ consensus_8866#1 TAATGATGGTGGTGACAGTTAATATATGTGTATAATTACTATTCCT--TTGCTTCATTTT 576 consensus_8866#0 AGATGATGATTTGGAACAAAATGATGAAGGTGATGATGATGACGAGGACGACGATGATTA 958 consensus_8866#2 ------------------------------------------------------------ consensus_8866#1 TGATATTCCTTTGTTTTTTGTCTATGTTTATCATGTGTTTTATTTGT------------- 623 consensus_8866#0 TTGATAATC 967 consensus_8866#2 --------- consensus_8866#1 --------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||