These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8870#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 982 fasta sequence [CATTCGGGATGATGGACAGTCGTTGATGAGCGCCTACAATCTCAAAGGAGACTATGTATCCCTTGTCCATAAATCACTCGTAGCTGTATAAATGTCATTCAACCAATATCTCAGTTAGAGGTGAATGGGAATGAATCTGATGCCCAAGAAGATGTATCCAGGTCTTCTCACGCGCGGAGTCTGATTAGCGCAGCAAGCAAAACACAGACTCACATCCATACATAAATGCAATAGATACCAGACTCCAAGTGTATATTACCATGGGAACTCGGTAAACTTCATAGCAAATTATTCCAATACTCATCGGAAGCGTCGGTACCATGTGGGATCTATCTAGATCTCAATGGTGTCGTTCCTGGTCCGGTACGATTCACTGCCCAGAGTAAACCCATGCCACGTTGTTGTCCACGAATGTACTTTGGGGAGCAACATGTACATTTGTCCATCCACCATGTCGTTATGGGGCATTATGTACTCGTCCTGACTGTGCTTTCACACACTCATCGAAAAAAGTATTGCCTGTGGTATCTGCCAACCCAGCTCAAATAGTATGCCGTTTCCAAAACAGATGTACAAATCCCCACTGTCAATTTTACCACCCACCTGTTGTTGTTCAAGCCCCTCCAATCATTGTTCGAAGTTCAGCTTCAACTGTCCCTGTTTTCAATAGCCAAATTCCATGTCGATATGGTTCTGGTTGCACTAATCGTACTAAATGTCCTTTCCTTCATTCTGATTTACCCTCAGTTGATCAACTTAAATGGATTGCACCTTCCAAGAAACAACAATCATCTAATCCAATTTCCACAAAGGCAAACTCTACATAGAAAGCAGTTAAGTCTGTAACCACACTTAATGAATAATGGGTTAGTTGTTATTAATGTTATGGACTAAAGTTTTTTTAAAGACTATTAGTTAACAATATTATGTTTTGTCATGCATTTTTGCTGTTTATTTTTTCAATTTTAATAATAAATAATTG] [+] EMBL CD126163 [CATTCGGGATGATGGACAGTCGTTGATGAGCGCCTACAATCTCAAAGGAGACTATGTATCCCTTGTCCATAAATCACTCGTAGCTGTATAAATGTCATTCAACCAATATCTCAGTTAGAGGTGAATGGGAATGAATCTGATGCCCAAGAAGATGTATCCAGGTCTTCTCACGCGCGGAGTCTGATTAGCGCAGCAAGCAAAACACAGACTCACATCCATACATAAATGCAATAGATACCAGACTCCAAGTGTATATTACCATGGGAACTCGGTAAACTTCATAGCAAATTATTCCAATACTCATCGGAAGCGTCGGTACCATGTGGGATCTATCTAGATCTCAATGGTGTCGTTCCTGGTCCGGTACGATTCACTGCCCAGAGTAAACCCATGCCACGTTGTTGTCCACGAATGTACTTTGGGGAGCAACATGTACATTTGTCCATCCACCATGTCGTTATGGGGCATTATGTACTCGTCCTGACTGTGCTTTCACACACTCATCGAAAAAAGTATTGGCTGTGGTATCTGNCAAACCAG ] [-] EMBL CD194470 [ ATGCCA GTTGTT TCCACG ATGTAAATT TGGAGCAACATGTACATTTGTCCATCCACCATGTCGTTATGGGGCATTATGTACTCGTCCTGACTGTGCTTTCACACACTCATCGAAAAAAGTATTGCCTGTGGTATCTGCCAACCCAGCTCAAATAGTATGCCGTTTCCAAAACAGATGTACAAATCCCCACTGTCAATTTTACCACCCACCTGTTGTTGTTCAAGCCCCTCCAATCATTGTTCGAAGTTCAGCTTCAACTGTCCCTGTTTTCAATAGCCAAATTCCATGTCGATATGGTTCTGGTTGCACTAATCGTACTAAATGTCCTTTCCTTCATTCTGATTTACCCTCAGTTGATCAACTTAAATGGATTGCACCTTCCAAGAAACAACAATCATCTAATCCAATTTCCACAAAGGCAAACTCTACGGAGAAAGCAGTTAAGT ] [+] EMBL CD147956 [ TACATTTGTCCATCCACCATGTCGTTATGGGGCATTATGTACTCGTCCTGACTGTGCTTTCACACACTCATCGAAAAAAGTATTGCCTGTGGTATCTGCCAACCCAGCTCAAATAG ] [-] EMBL AI067783 [ AATAGCCAAATTCCATGTGGATATGGTTCTGGGTGCACTAATCGTACTAAATGTCCTTTCCTTCAATCTGATTTACCCTCAGTTGACCAACTTAAATGGATTGCACCTTCCAAGAAACAACAATCATCTAATCCAATTTCCACAAAGGCAAACTTTACATGGAAAGCAGTTAAGTCTGTAACCACACTTAATGAATAATGGGTTAGTTGTTATTAATGTTATGGACTAAAGTTTTTTTAAAGACTATTAGTTAACAATATTATGTTTTGTCATGCATTTTTGCTGTTTATTTTTTCAATTTTAATAATAAATAATTG] [-] EMBL AI067692 [ GTACTAAATGTCCTTTCCTTCATTGTGATTTACCCTCAGTTGATCAACTTAAATGGATTGCACCTTCCAAGAAACAACAATCATGTAATCCAATTTCCACAAAGGCAAACTCTACATAGAAAGCAGTTAAGTCTGTAACCACACTTAATGAATAATGGATTAGTTGTTATTAATGTTATCGACTAAAGTTTTCTTAAAGACTATTAGTTAACAATATTATGTTTTGTCATGCATTTCTGCTGTTTATTTTTTCAATTTTAATAATAAATAATTG] consensusID : consensus_8870#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 459 fasta sequence [CAACCAAATATTCCAAGCTCATTGGAGCGTTGTAAATTTTGGCCTAATTGTCGCAATGGTAGTTCCTGTCCGTACATTCATCCCACAGAACCATGCCAGTTGTTTCCACGATGTAAATTTGGAGCAACATGTACATTTGTCCACCCACCATGTCGTTATGGGGCATTATGTACTCGTCCTGACTGTGCTTTCACACACTCATCGAAAAAAGTATTGCCTGTGGTATCTGCCAACCCAGCTCAAATAGTATGCCGTTTCCAAAACAGATGTACAAATCCCCACTGTCAATTTTACCACCCACCTGTTGTTGTTCAAGCCCCTCCAATCATTGTTCGAAGTTCAGCTTCAACTGTCCCTGTTTTCAATAGCCAAATTCCATGTCGATATGGTTCTGGTTGCACTAATCGTACTAAATGTCCTTTCCTTCATTCTGATTTACCCTCAGTTGATCAACTTAAA] [-] EMBL CD178432 [CAACCAAATATTCCAAGCTCATTGGAGCGTTGTAAATTTTGGCCTAATTGTCGCAATGGTAGTTCCTGTCCGTACATTCATCCCACAGAACCATGCCAGTTGTTTCCACGATGTAAATTTGGAGCAACATGTACATTTGTCCACCCACCATGTCGTTATGGGGCATTATGTACTCGTCCTGACTGTGCTTTCACACACTCATCGAAAAAAGTATTGCCTGTGGTATCTGCCAACCCAGCTCAAATAGTATGCCGTTTCCAAAACAGATGTACAAATCCCCACTGTCAATTTTACCACCCACCTGTTGTTGTTCAAGCCCCTCCAATCATTGTTCGAAGTTCAGCTTCAACTGTCCCTGTTTTCAATAGCCAAATTCCATGTCGATATGGTTCTGGTTGCACTAATCGTACTAAATGTCCTTTCCTTCATTCTGATTTACCCTCAGTTGATCAACTTAAA] [+] EMBL CD192847 [ AAGTATTGCCTGTGGTATCTGCCAACCCAGCTCAAATAGTATGCCGTTTCCAAAACAGATGTACAAATCCCCACTGTCAATTTTACCACCCACCTGTTGTTGTTCAAGCCCCTCCAATCATTGTTCGAAGTTCAGCTTCAACTGTCCCTGTTTTCAATAGCCAAATTCCATGTCGATATGGTTCTGGTTGCACT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8870#0 CATTCGGGATGATGGACAGTCGTTGATGAGCGCCTACAATCTCAAAGGAGACTATGTATC 60 consensus_8870#1 ------------------------------------------------------------ consensus_8870#0 CCTTGTCCATAAATCACTCGTAGCTGTATAAATGTCATTCAACCAATATCTCAGTTAGAG 120 consensus_8870#1 ------------------------------------------------------------ consensus_8870#0 GTGAATGGGAATGAATCTGATGCCCAAGAAGATGTATCCAGGTCTTCTCACGCGCGGAGT 180 consensus_8870#1 ------------------------------------------------------------ consensus_8870#0 CTGATTAGCGCAGCAAGCAAAACACAGACTCACATCCATACATAAATGCAATAGATACCA 240 consensus_8870#1 ------------------------------------------------------------ consensus_8870#0 GACTCCAAGTGTATATTACCATGGGAACTCGGTAAACTTCATAGCAAATTATTCCAATAC 300 consensus_8870#1 -----------------------------------------CAACCAAATATTCCAA-GC 18 * * ** ******** * consensus_8870#0 TCATCGGAAGCGTCGGTACCATGTGGGATCTATCTAGATCTCAATGGTGTCGTTCCTGGT 360 consensus_8870#1 TCATTGGA-GCGTTGTAA--ATTTTGGCCTAATT---GTCGCAATGGTA--GTTCCTG-- 68 **** *** **** * * ** * ** ** ** ******* ******* consensus_8870#0 CCGGTACGATTCACTGCCCAGAGTAAACCCATGCCACGTTGTTGTCCACGAATGTACTTT 420 consensus_8870#1 TCCGTAC-ATTCATCCCACAGAA-----CCATGCCA-GTTGTT-TCCACGA-TGTAAATT 119 * **** ***** * **** ******** ****** ******* **** ** consensus_8870#0 GGGGAGCAACATGTACATTTGTCCATCCACCATGTCGTTATGGGGCATTATGTACTCGTC 480 consensus_8870#1 TGG-AGCAACATGTACATTTGTCCACCCACCATGTCGTTATGGGGCATTATGTACTCGTC 178 ** ********************* ********************************** consensus_8870#0 CTGACTGTGCTTTCACACACTCATCGAAAAAAGTATTGCCTGTGGTATCTGCCAACCCAG 540 consensus_8870#1 CTGACTGTGCTTTCACACACTCATCGAAAAAAGTATTGCCTGTGGTATCTGCCAACCCAG 238 ************************************************************ consensus_8870#0 CTCAAATAGTATGCCGTTTCCAAAACAGATGTACAAATCCCCACTGTCAATTTTACCACC 600 consensus_8870#1 CTCAAATAGTATGCCGTTTCCAAAACAGATGTACAAATCCCCACTGTCAATTTTACCACC 298 ************************************************************ consensus_8870#0 CACCTGTTGTTGTTCAAGCCCCTCCAATCATTGTTCGAAGTTCAGCTTCAACTGTCCCTG 660 consensus_8870#1 CACCTGTTGTTGTTCAAGCCCCTCCAATCATTGTTCGAAGTTCAGCTTCAACTGTCCCTG 358 ************************************************************ consensus_8870#0 TTTTCAATAGCCAAATTCCATGTCGATATGGTTCTGGTTGCACTAATCGTACTAAATGTC 720 consensus_8870#1 TTTTCAATAGCCAAATTCCATGTCGATATGGTTCTGGTTGCACTAATCGTACTAAATGTC 418 ************************************************************ consensus_8870#0 CTTTCCTTCATTCTGATTTACCCTCAGTTGATCAACTTAAATGGATTGCACCTTCCAAGA 780 consensus_8870#1 CTTTCCTTCATTCTGATTTACCCTCAGTTGATCAACTTAAA------------------- 459 ***************************************** consensus_8870#0 AACAACAATCATCTAATCCAATTTCCACAAAGGCAAACTCTACATAGAAAGCAGTTAAGT 840 consensus_8870#1 ------------------------------------------------------------ consensus_8870#0 CTGTAACCACACTTAATGAATAATGGGTTAGTTGTTATTAATGTTATGGACTAAAGTTTT 900 consensus_8870#1 ------------------------------------------------------------ consensus_8870#0 TTTAAAGACTATTAGTTAACAATATTATGTTTTGTCATGCATTTTTGCTGTTTATTTTTT 960 consensus_8870#1 ------------------------------------------------------------ consensus_8870#0 CAATTTTAATAATAAATAATTG 982 consensus_8870#1 ---------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||