These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8871#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 638 fasta sequence [TAGTACTTTATTCAGATTTATTCCTAAGTACACAAACATATATATACACTCAAAAATAAATTTACGAAA---TATCTGATTCCACATTTAATTTACATACATATATGAAAGGCTCACAAACACAGAGAGAAACAAAATTTCAAATTCAATTGAGCATAAAGCTGGAAATGCAAAATACTAAGTGAAAAACTAAAAAAAAAATTGATGGTAGAGTAAAAGACAGAAATAAAAGAAAATATAATAGAATCTAGTTAGGTAATACATCCAGATGATATTGAATTGGTAGGGCTACTATTACTATCACCAACACCTATAGTACTATTATTAACTATTGTAGAAGTATTATCAGTAGCTGTTGATGTACTTGAAGCAACTTTAGCGTCTAAATAGAAAAGAATGTAGGCTGTATAAGAAGATTTCGAGGTTTCCGTAGACGAACCAAAAAAGTCTTCAATATTGGTGCGATGGATTTTTTCAACTAGTTCGTCATCAAACAAAAACCATAGTTCATGAGACTTCACAAGTGTTACATAATGTCCACGATTTGGTCCAGAGCCTGAGTGGACAACAACAGCCATAAGATTATATAGACGATCATCATTAGATGAGTCACTAGACATATTGAATAGTCTTAATTCCAT] [+] EMBL CD077114 [TAGTACTTTATTCAGATTTATTCCTAAGTACACAAACATATATATACACTCAAAAATAAATTTACGAAA TATCTGATTCCACATTTAATTTACATACATATATGAAAGGCTCACAAACACAGAGAGAAACAAAATTTCAAATTCAATTGAGCATAAAGCTGGAAATGCAAAATACTAAGTGAAAAACTAAAAAAAAAATTGATGGTAGAGTAAAAGACAGAAATAAAAGAAAATATAATAGAATCTAGTTAGGTAATACATCCAGATGATATTGAATTGGTAGGGCTACTATTACTATCACCAACACCTATAGTACTATTATTAACTATTGTAGAAGTATTATCAGTAGCTGTTGATGTACTTGAAGCAACTTTAGCGTCTAAATAGAAAAGAATGTAGGCTGTATAAAAAGATTTCGAGGTTTCCGTAGACGAACCAAAAAAGTCTTCAATATTGGTGCGATGGATTTTTTCAACTAGTTCGTCATCAAACAAAAACCATAGTTCATGAGACTTCACAAGTGTTACATAATGTCCACGATTTGGTCCAGAGCCTGAGTGGACAACAACAGCCATAA ] [-] EMBL AI976728 [ AGTACTTTATTCAGATTTATTCCTAAGTACACANACATATATATACACTCAAAAATAAATTTACGAAATATTATCTGATTCCACATTTAATTTACATACATATATGAAAGGCTCACAAACACAGAGAGAAACAAAATTTCAAATTCAATTGAGCATAAAGCTGGAAATGCAAAATACTAAGTGAAAAACTAAAAAAAAAATTGATGGTAGAGTAAAAGACAGAAATAAAAGAAAATATAATAGAATCTAGTTAGGTAATACATCCAGATGATATTGAATTGGTAGGGCTACTATTACTATCACCAACACCTATAGTACTATTATTAACTATTGTAGAAGTATTATCAGTAGCTGTTGATGTACTTGAAGCAACTTTAGCGTCTAAATAGAAAAGAATGTAGGCTGTATAAGAAGATTTCGAGGTTTCCGTAGACGAACCAAAAAAGTCTTCAATATTGGTGCGATGGATTTTTTCAACTAGTTCGTCATCAAACAAAAACCATAGTTCATGAGACTTCACAAGTGTTACATAATGTCCACGATTTGGTCCAGAGCCTGAGTGGACAACAACAGCCATAAG ] [+] EMBL CD194947 [ AAATAAAAGAAAATATAATAGAATCTAGTTAGGTAATACATCCAGATGATATTGAATTGGTAGGGCTACTATTACTATCACCAACACCTATAGTACTATTATTAACTATTGTAGAAGTATTATCAGTAGCTGTTGATGTACTTGAAGCAACTTTAGCGTCTAAATAGAAAAGAATGTAGGCTGTATAAGAAGATTTCGAGGTTTCCGTAGACGAACCAAAAAAGTCTTCAATATTGGTGCGATGGATTTTTTCAACTAGTTCGTCATCAAACAAAAACCATAGTTCATGAGACTTCACAAGTGTTACATAATGTCCACGATTTGGTCCAGAGCCTGAGTGGACAACAACAGCCATAAGATTATATAGACGATCATCATTAGATGAGTCACTAGACATATTGAATAGTCTTAATTCCAT] consensusID : consensus_8871#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 608 fasta sequence [CGTATCGGTGTTCATGAAGCAGTATTACAAGATATTGATCTGGCTATTAAATATAATTTCCCTAAGGATCGTCGTCCACGTCTATTCATACGTCGTTCACAAAGTCTTATTTCGCTGAAACGCTTTAAAGAGGCATTAATTGAATTCAATAACTGTATGGAATATATGAAATCTGAAAATTTAACTATTCCAAACAATTTAAATGAAGCGATACAAAAGGGAATAAAAGACTGTTCAACTATGAAAGATGAATTATTGATTGATGATTCAGTTATACCATACTTTGTACATGAGGCGAAATCGTTAATAATGAAGCATGGAAACACTCAAAAGATTATTATAAAGAATTGTAATAATTCTAATAATGGCAGTAATATTACAGACCATAATTTACATCCAAGCATTCTTCGCTCTCTTTATTTACAAGATCCACCAGCAGTGAGGTTAAATTATAATGATGAATTTGGTTGGCATATTGTAGCGACAAAAAATATTCAGCCAGGTGAACTTCTCATACTGGATAAACCATATTCTTGTAGACTTCATTACAGTAGATTACTACTCAATTGTTATCGTTGCTCTAACGATGTATCAATCCTATACCTTGC] [+] EMBL CD091994 [CGTATCGGTGTTCATGAAGCAGTATTACAAGATATTGATCTGGCTATTAAATATAATTTCCCTAAGGATCGTCGTCCACGTCTATTCATACGTCGTTCACAAAGTCTTATTTCGCTGAAACGCTTTAAAGAGGCATTAATTGAATTCAATAACTGTATGGAATATATGAGATCTGAAAATTTAACTATTCCAAACAATTTAAATGAAGCGATACAAAAGGGAATAAAAGACTGTTCAACTATGAAAGATGAATTATTGATTGATGATTCAGTTATACCATACTTTGTACATGAGGCGAAATCGTTAATAATGAAGCATGGAAACACTCAAAAGATTATTATAAAGAATTGTAATAATTCTAATAATGGCAGTAATATTACAGACCATAATTTACATCCAAGCATTCTTCGCCCTCTTTATTTACAAGATCCACCAGCAGTGAGGTTAAATTATAATGATGAATTTGGTTGGCATATTGTAGCGACAAAAAATATTCAGCCAGGTGAACTTCTCATACTGGATAAACCATATTCTTGTAGACTTCATTACAGTAGATTACTACTCAATTGTTATCGTTGCTCTAACGATGTATCAATCCTATACCTTGC] [+] EMBL CD091991 [CGTATCGGTGTTCATGAAGCAGTATTACAAGATATTGATCTGGCTATTAAATATAATTTCCCTAAAGATCGTCGTCCACGTCTATTCATACGTCGTTCACAAAGTCTTATTTCGCTGAAACGCTTTAAAGAGGCATTAATTGAATTCAATAACTGTATGGAATGTATGAAATCTGAAAATTTAACTATTCCAAACAATTTAAATGAAGCGATACAAAAGGGAATAAAAGACTGTTCAACTATGAAAGATGAATTATTGATTGATGATTCAGTTATACCATACTTTGTACATGAGGCGAAATCGTTAATAATGAAGCATGGAAACACTCAAAAGATTATTATAAAGAATTGTAATAATTCTAATAATGGCAGTAATATTACAGACCATAATTTACATCCAAGCATTCTTCGCTCTCTTTATTTACAAGATCCACCAGCAGTGAGGTTAAATTATAATGATGAATTTGGTTGGCATATTGTAGCGACAAAAAATATTCAGCCAGGTGAACTTCTCATACTGGATAAAC ] [-] EMBL CD072643 [ GGNATATATGAAATCTGAAAA TTAACTATTTCCAACAAATTAAATGAAGCGATACAAAAGGGAATAAAAGACTGTTCAACTATGAAAGATGAATTATTGATTGATGATTCAGTTATACCATACTTTGTACATGAGGCGAAATCGTTAATAATGAAGCATGGAAACACTCAAAAGATTATTATAAAGAATTGTAATAATTCTAATAATGGCAGTAATATTACAGACCATAATTTACATCCAAGCATTCTTCGCTCTCTTTATT ] consensusID : consensus_8871#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 247 fasta sequence [GGCAAGGTATAGGATTGATACATCGTTTATAGCAACGATAACAATTGAGTAGTAATCTACTGTAATGAAGTCTACAAGAATATGGTTTATCCAGTATGAGAAGTTCACTTCAACTAGTTCGTCATCAAACAAAAACCATAGTTCATGAGACTTCACAAGTGTTACATAATGTCCACGATTTGGTCCAGAGCCTGAGTGGACAACAACAGCCATAAGATTATATAGACGATCATCATTAGATGAGTCA] [+] EMBL CD179841 [GGCAAGGTATAGGATTGATACATCGTTTATAGCAACGATAACAATTGAGTAGTAATCTACTGTAATGAAGTCTACAAGAATATGGTTTATCCAGTATGAGAAGTTCACTTCAACTAGTTCGTCATCAAACAAAAACCATAGTTCATGAGACTTCACAAGTGTTACATAATGTCCACGATTTGGTCCAGAGCCTGAGTGGACAACAACAGCCATAAGATTATATAGACGATCATCATTAGATGAGTCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8871#0 TAGTACTTTATTCAGATTTATTCCTAAGTACACAAACATATATATACACTCAAAAATAAA 60 consensus_8871#2 ------------------------------------------------------------ consensus_8871#1 ---CGTATCGGTGTTCATGAAGCAGTATTACAAGATATTGATCTGGCTATTAAATATAAT 57 consensus_8871#0 TTTACGAAATATCTGATTCCACATTTAATTTACATACATATATGAAAGGCTCACAAACAC 120 consensus_8871#2 ------------------------------------------------------------ consensus_8871#1 TTCCCTAAGGATCGTCGTCCACGTCTATTCATACGTCGTTCACAAAGTCTTATTTCGCTG 117 consensus_8871#0 AGA-GAGAAACAAAATTTCAAATTCAATTGAGCATAAAGCTGGAAATGCAAAATACTAAG 179 consensus_8871#2 ------------------------------------------------------------ consensus_8871#1 AAACGCTTTAAAGAGGCATTAATTGAATTCAATAACTGTATGGAATATATGAAATCTGAA 177 consensus_8871#0 TGAAAAACTAAAAAAAAAATTGATGGTAGAGTAAAAGACAGAAATAAAAGAAAATATAAT 239 consensus_8871#2 ------------------------------------------------------------ consensus_8871#1 AATTTAACTATTCCAAACAATTTAAATGAAGCGATACA---AAAGGGAATAAAAGACTGT 234 consensus_8871#0 AGAATCTAGTTAGGTAATACATCCAGATGATATTGAATTGGTAGGGCTACTATTACTATC 299 consensus_8871#2 ------------------------------------------------------------ consensus_8871#1 TCAACTATGAAAGATGAATTATTGATTGATGATTCAGTTATACCATACTTTGTACATGAG 294 consensus_8871#0 ACCAACACCTATAGTACTATTATTAACTATTGTAGAAGTATTATCAGTAGCTGTTGATGT 359 consensus_8871#2 ----------------------------------------------------GGCAAGGT 8 consensus_8871#1 GCGAAATCGTTAATAATGAAGCATGGAAACACTCAAAAGATTATTATAAAGAATTGTAAT 354 * consensus_8871#0 ACTTGAAGCAACTTTAGCGTCTAAATAG-AAAAGAATGTAGGCTGTATAAGAAGA--TTT 416 consensus_8871#2 A--TAGGATTGATACATCGTTT--ATAG-CAACGATAACAA-TTGAGTAGTAATC--TAC 60 consensus_8871#1 AATTCTAATAATGGCAGTAATATTACAGACCATAATTTACATCCAAGCATTCTTCGCTCT 414 * * * * ** * * * * consensus_8871#0 CGAGGTTTCCGTAGACGAACCAAAAAAGTCTTCAATATTGGTGCGATGGATTT-TTTCAA 475 consensus_8871#2 TGTAAT----GAAGTCTA--CAAGAATATGGTTTAT-CCAGTATGAGAAGTTCACTTCAA 113 consensus_8871#1 CTTTATTTACAAGATCCA-CCAGCAGTGAGGTTAAA-TTATAATGATGAATTTGGTTGGC 472 * * * ** * * * ** ** ** consensus_8871#0 CTAGTTCGTCATCAAACAAAAACCATAGTTCATGAGACT-TCACAAGTGTTACATAATGT 534 consensus_8871#2 CTAGTTCGTCATCAAACAAAAACCATAGTTCATGAGACT-TCACAAGTGTTACATAATGT 172 consensus_8871#1 ATATTGTAGCGACAAAAAATATTCA-GCCAGGTGAACTTCTCATACTGGATAAACCATAT 531 ** * * **** ** * ** *** * *** * * ** * ** * consensus_8871#0 CCACGATTTGGTCCAGAGCCTGAGTGGACAACAACAGCCATAAGATTATATAGACGAT-C 593 consensus_8871#2 CCACGATTTGGTCCAGAGCCTGAGTGGACAACAACAGCCATAAGATTATATAGACGAT-C 231 consensus_8871#1 TCTTG-TAGACTTCATTACAGTAGATTACTACTCAATTGTTATCGTTGCTCTAACGATGT 590 * * * * ** * ** ** ** * ** ** ***** consensus_8871#0 ATCA-TTAGATGAGTCACTAGACATATTGAATAGTCTTAATTCCAT 638 consensus_8871#2 ATCA-TTAGATGAGTCA----------------------------- 247 consensus_8871#1 ATCAATCCTATACCTTGC---------------------------- 608 **** * ** * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||