These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8873#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1015 fasta sequence [CGAGGAGAACCNTTAAGAAACATTCAAGCGTTCAGATAAAGACTTCTCATATTCACCTTACGAAGATTCGCTGACTTACATGGAGACTTGTATTTAAGTATGAATATTATTTCCAACTTATATATAATACTTTCTACTGTTTAAAGTAGCATTTAATATTCCTTTATTAATTTCCTGTTGACTAAACTTTACAATATCCCCTTCAGATATAGTAGCTGTTTTGTGTCCAAACGGACCATTGCGATTGCTTGTAGAAATGGCTCATGAACGACAACAACCTCTTTTCCCTGCCCTTCTATATTCAACTACTACAGTTTATCTTGTCAAAAAACATCAACCAGTTGAGAAAGTTGAAAATGATCAACAATTTGTTGGATCCACTATTACATGTTCTGTTGATG-CTCGGAATGAAGCGTTAAATATTAATTGTACTACACAACCTTGTCCTACTACATCGGAGTTGGTAGCTTCAGATAACAGTAACCAGCCGATGACAGGGAATTCAAGAAACATGTTAAATATTCCTAATAATACGTCCCGAACCGATGCAATTGTAGTTGATACTCCTGATGACAATACGATTAATAATGATGCCAGGAATAACAATGAAACTATATCACAGGCACCTCATGAAACAGATACACTTGTAGCAGGCCGACCCAATCGTTGGCAAGAACTGCAAGCAGATTTAATTGATCGTGACTCAAAGGGTGTAAAACTTGGTTTAGGCGATTTTGTATTTTATAGTTTACTGATTGGTCGTGCAACACTTGATGGCGATGCAGTCACTGTGGTCACATGTTATGTGGCTATATTGGTTGGAATGTGTATTACTGTTATAGTATTGGGAATTACACGACAAGCATTACCAGCTTTACCAATAT-CCATAACATGTGGTATATTATTTTATTTTGTCAGTTCAGCGACGATATCACCGTTTCTTGAAGCAACAGCCATTGAACGTGTGTTCTTCTGACGTGATTTGTTATTATTATTATTGGCACTACTGCTGGTA] [+] EMBL CD083490 [CGAGGAGAACCNTTAAGAAACATTCAAGCGTTCAGATAAAGACTTCTCATATTCACCTTACGAAGATTCGCTGACTTACATGGAGACTTGTATTTAAGTATGAATATTATTTCCAACTTATATATAATACTTTCTACTGTTTAAAGTAGCATTTAATATTCCTTTATTAATTTCCTGTTGACTAAACTTTACAATATCCCCTTCAGATATAGTAGCTGTTTTGTGTCCAAACGGACCATTGCGATTGCTTGTAGAAATGGCTCATGAACGACAACAACCTCTTTTCCCTGCCCTTCTATATTCAACTACTACAGTTTATCTTGTCAAAAAACATCAACCAGTTGAGAAAGTTGAAAATGATCAACAATTTGTTGGATCCACTATTACATGTTCTGTTGATG CTCGGAATGAAGCGTTCAATATTAATTGTAC ] [+] EMBL AI975562 [ TTCAACTACTACAGTTTATCTTGTCAAAAAACATCAACCAGTTGAGAAAGTTGAAGATGATCAACAGTTTGTTGGATCCACTATTACATGTTCTGTTGATG CTCGGAATGAAGCGTTAAATATTAATTGTACTACACAACCTTGTTCTACTACATCGGAGTTGGTAGCTTCAGATAACAGTTACCACCCGATGACAGGGAATTCAAGAAACATGTTAAATATTCCTAATAATACGTCCCGAACCGATGCAATTGTAGTTGATACTCCTGATGACAGTACGATTAATAATGATGCCAGGAATAACAATGAAACTATATCACAGGCACCTCATGAAACAGATACACTTGTAGCAGGCCGACCCAATCGTTGGCAAGAACTGCAAGCAGATTTAATTGATCGTGACTCAAAGGGTGTAAAACTTGGTTTAGGCGATTTTGTATTTTATAGTTTACTGATTGGTCGTGCAACACTTGATGGCGATGCAGTCACTGTGGTCACATGTTATGTGGC ] [+] EMBL AI975474 [ TTCAACTACTACAGTTTATCTTGTCAAAAAACATCAACCAGTTGAGAAAGTTGAAAATGATCAACAATTTGTTGGATCCACTATTACATGTTCTGTTGATG CTCGGAATGAAGCGTTAAATATTAATTGTACTACACAACCTTGTCCTACTACATCGGAGTTGGTAGCTTCAGATAACAGTAACCAGCCGATGACAGGGAATTCAAGAAACATGTTAAATATTCCTAATAATACGTCCCGAACCGATGCAATTGTAGTTGATACTCCTGATGACAATACGATTAATAATGATGCCAGGAATAACAATGAAACTATATCACAGGCACCTCATGAAACAGATACACTTGTAGCAGGCCGACCCAATCGTTGGCAAGAACTGCAAGCAGATTTAATTGATCGTGACTCAAAGGGTGTAAAACTTGGTTTAGGCGATTTTGTATTTTATAGTT ] [+] EMBL BF936333 [ TTCAACTACTACAGTTTATCTTGTCAAAAAACATCAACCAGTTGAGAAAGTTGAAAATGATCAACAATTTGTTGGATCCACTATTACATGTTCTGTTGATG CTCGGAATGAAGCGTTAAATATTAATTGTACTACACAACCTTGTCCTACTACATCGGAGTTGGTAGCTTCAGATAACAGTAACCAGCCGATGACAGGGAATTCAAGAAACATGTTAAATATTCCTAATAATACGTCCCGAACCGATGCAATTGTAGTTGATACTCCTGATGACAATACGATTAATAATGATGCCAGGAATAACAATGAAACTATATCACAGGCACCTCATGAAA ] [+] EMBL BF936705 [ GTTGAGAAAGTTGAAAATGATCAACAATTTGTTGGATCCACTATTACATGTTCTGTTGATGCCTCGGAATGAAGCGTTAAATATTAATTGTACTACACAACCTTGTCCTACTACATCGGAGTTGGTAGCTTCAGATAACAGTAACCAGCCGATGACAGGGAATTCAAGAAACATGTTAAATATTCCTAATAATACGTCCCGAACCGATGCAATTGTAGTTGATACTCCTGATGACAATACGATTAATAATGATGCCAGGAATAACAATGAAACTATATCACAGGCACCTCATGAAACAGATACACTTGTAGCAGGCCGACCCAATCGTTGGCAAGAACTGCAAGCAGATTTAATTGATCGTGACTCAAAGGGTGTAAAACTTGGTTTAGGCGATTTTGTATTTTATAGTTTACTGATTGGTCGTGCAACACTTGATGGCGATGCAGTCACTGTGGTCACATGTTATGTGGCTATATTGGTTGGAATGTGTATTACTGTTATAGTATTGGGAATTACACGACAAGCATTACCAGCTTTACCAATAT CCATAACATGTGGTATATTATTTTATTTTGTCAGTTCAGCGACGATATCACCGTTTCTTGAAGCAACAGCCATTGAACGTGTGTTCTTCTGACGTGATTTGTTATTATTATTATTGGCACTACTGCTGGTA] [+] EMBL CD181714 [ ATTCAAGAAACATGTTAAATATTCCTAATAATACGTCCCGAACCGATGCAATTGTAGTTGATACTCCTGATGACAATACGATTAATAATGATGCCAGGAATAACAATGAAACTATATCACAGGCACCTCATGAAACAGATACACTTGTAGCAGGCCGACCCAATCGTTGGCAAGAACTGCAAGCAGATTTAATTGATCGTGACTCAAAGGGTGTAAAACTTGGTTTAGGCGATTTTGTATTTTATAGTTTACTGATTGGTCGTGCAACACTTGATGGCGATGCAGTCACTGTGGTCACATGTTATGTGGCTATATTGGTTGGAATGTGTATTACTGTTATAGTATTGGGAA TACACGACAAGCATTACCAGCTTTACCNATATCCCAT ACATGTGGNATATTANTTTt ] consensusID : consensus_8873#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 202 fasta sequence [GGCCGCCATGGCGGCCGTTTTTAATTCGATTATCTCATGCTTTTGACGATATCACCGTTTCTTGAAGCAACAGCAATTGAACGTGTGTTCTTCTGACGTGATTTGTTATTATTATTATTGTCACTACTGCTGTTATTATGATTGTTTTTTCGTTGTTTTTATACAATCTTCATTGTTACCGTTGATTTAAAATACTCATTAA] [+] EMBL CD092594 [GGCCGCCATGGCGGCCGTTTTTAATTCGATTATCTCATGCTTTTGACGATATCACCGTTTCTTGAAGCAACAGCAATTGAACGTGTGTTCTTCTGACGTGATTTGTTATTATTATTATTGTCACTACTGCTGTTATTATGATTGTTTTTTCGTTGTTTTTATACAATCTTCATTGTTACCGTTGATTTAAAATACTCATTAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8873#0 CGAGGAGAACCNTTAAGAAACATTCAAGCGTTCAGATAAAGACTTCTCATATTCACCTTA 60 consensus_8873#1 ------------------------------------------------------------ consensus_8873#0 CGAAGATTCGCTGACTTACATGGAGACTTGTATTTAAGTATGAATATTATTTCCAACTTA 120 consensus_8873#1 ------------------------------------------------------------ consensus_8873#0 TATATAATACTTTCTACTGTTTAAAGTAGCATTTAATATTCCTTTATTAATTTCCTGTTG 180 consensus_8873#1 ------------------------------------------------------------ consensus_8873#0 ACTAAACTTTACAATATCCCCTTCAGATATAGTAGCTGTTTTGTGTCCAAACGGACCATT 240 consensus_8873#1 ------------------------------------------------------------ consensus_8873#0 GCGATTGCTTGTAGAAATGGCTCATGAACGACAACAACCTCTTTTCCCTGCCCTTCTATA 300 consensus_8873#1 ------------------------------------------------------------ consensus_8873#0 TTCAACTACTACAGTTTATCTTGTCAAAAAACATCAACCAGTTGAGAAAGTTGAAAATGA 360 consensus_8873#1 ------------------------------------------------------------ consensus_8873#0 TCAACAATTTGTTGGATCCACTATTACATGTTCTGTTGATGCTCGGAATGAAGCGTTAAA 420 consensus_8873#1 ------------------------------------------------------------ consensus_8873#0 TATTAATTGTACTACACAACCTTGTCCTACTACATCGGAGTTGGTAGCTTCAGATAACAG 480 consensus_8873#1 ------------------------------------------------------------ consensus_8873#0 TAACCAGCCGATGACAGGGAATTCAAGAAACATGTTAAATATTCCTAATAATACGTCCCG 540 consensus_8873#1 ------------------------------------------------------------ consensus_8873#0 AACCGATGCAATTGTAGTTGATACTCCTGATGACAATACGATTAATAATGATGCCAGGAA 600 consensus_8873#1 ------------------------------------------------------------ consensus_8873#0 TAACAATGAAACTATATCACAGGCACCTCATGAAACAGATACACTTGTAGCAGGCCGACC 660 consensus_8873#1 ------------------------------------------------------------ consensus_8873#0 CAATCGTTGGCAAGAACTGCAAGCAGATTTAATTGATCGTGACTCAAAGGGTGTAAAACT 720 consensus_8873#1 ------------------------------------------------------------ consensus_8873#0 TGGTTTAGGCGATTTTGTATTTTATAGTTTACTGATTGGTCGTGCAACACTTGATGGCGA 780 consensus_8873#1 ------------------------------------------------------------ consensus_8873#0 TGCAGTCACTGTGGTCACATGTTATGTGGCTATATTGGTTGGAATGTGTATTACTGTTAT 840 consensus_8873#1 ------------------------------------------------------------ consensus_8873#0 AGTATTGGGAATTACACGACAAGCATTACCAGCTTTACCAATATCCATAACATGTGGTAT 900 consensus_8873#1 ---------------------------------------GGCCGCCATGGCG-GCCGTTT 20 **** * * ** * consensus_8873#0 ATTATTTTATTTTGTCAGTTCAGCGACGATATCACCGTTTCTTGAAGCAACAGCCATTGA 960 consensus_8873#1 TTAATTCGATTATCTCATGCTTTTGACGATATCACCGTTTCTTGAAGCAACAGCAATTGA 80 * *** *** * *** ****************************** ***** consensus_8873#0 ACGTGTGTTCTTCTGACGTGATTTGTTATTATTATTATTGGCACTACTGCTGGTA----- 1015 consensus_8873#1 ACGTGTGTTCTTCTGACGTGATTTGTTATTATTATTATTGTCACTACTGCTGTTATTATG 140 **************************************** *********** ** consensus_8873#0 ------------------------------------------------------------ consensus_8873#1 ATTGTTTTTTCGTTGTTTTTATACAATCTTCATTGTTACCGTTGATTTAAAATACTCATT 200 consensus_8873#0 -- consensus_8873#1 AA 202 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||