These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8884#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1097 fasta sequence [TTTTATGGTGGCGGGGGAGCTTCTATCGGTATAGCACGTTTGTTAGTACAAGCAATTATGGAGGAGGGTTTCTCTGAAGATGAAGCTAAATCACGTATTTTTATAATGGATTCTAAAGGTTTAATTGTTACAAGTCGTGAACTTAGTGCAGCAAAATCAGAATTCGCTCGTTCTGATTATCCTCAAATAGATTCACTTTTGGAAGCTATTCGATTCATTCGACCTTCTGTTTTGATTGGTGCTTCTGCACAAAGCGGTGCATTCACGCGTGATATTCTTCGTGAACTGTCGACAATCCATAAGACTCCTATCATATTTGTCCTGAGCAATCAATCAAATCTAGGAGAATGCACTTCCCAGATGGCTTATAAGGCTACAGAATGGCGATGTATATTTGTCAGTGGTTCTCCTTCAGAACCTGTTCGAACACCAGATAATCGTATATTAAAACCGAGTCAAGGAAATAACTGCTATGTTTTTCCAAGTTTGGTTAATGCATTATCGTTGGCTGCGATTCGTCCGCTGACCAATAAATTGTTATTGACTGCGGCAAAGAAACTATCTGAATTAGTTACAGACGATGATATACGTCAAGGTAGTATGTATCCATCAATTGCTCGATTGCCAACAA-TTACAAAAGAAGTCTCTTGCGCTATTATGGAACAAGCATACAAGGATAAAATTGCATTTTTTACTCCAGAACCAGATAATAAGATGGAATTTATTGAATCTTACTATTATGATCATAGATATATTAATTTTACACCCGACCAATATGTTTGGTAGCCATTTTGACTCATTTCTATTCCGTGTTTCCTCTATCTATTTGAACAGAACTCGATTGATTACTTAAATTTTATCTTCAAACTGGTAAGAATGATTTCAACATATGTATTGATAATGTATGGCTATTTCTTACTATCTATTCGTTTTAAAGTGTTGATCTAAATATCGATATTCGTTGTATTCATACCTTTCTTCTGTAAGACTATTTTTCTGTCAAACGGTTTGTACGATCTGTGAAAAATGTTTTTTAGTAAATAACTATACCTTTCAACTGTGGTAATTAAAAAAGTAATAACGTATGCCTTAGATGT] [+] EMBL CD082453 [TTTTATGGTGGCGGGGGAGCTTCTATCGGTATAGCACGTTTGTTAGTACAAGCAATTATGGAGGAGGGTTTCTCTGAAGATGAAGCTAAATCACGTATTTTTATAATGGATTCTAAAGGTTTAATTGTTACAAGTCGTGAACTTAGTGCAGCAAAATCAGAATTCGCTCGTTCTGATTATCCTCAAATAGATTCACTTTTGGAAGCTATTCGATTCATTCGACCTTCTGTTTTGATTGGTGCTTCTGCACAAAGCGGTGCATTCACGCGTGATATTCTTCGTGAACTGTCGACAATCCATAAGACTCCTATCATATTTGTCCTGAGCAATCAATCAAATCTAGGAGAATGCACTTCCCAGATGGCTTATAAGGCTACAGAATGGCGATGTATATTTGTCAGTGGTTCTCCTTCAGAACCTGTTCGAACACCAGATAATCGTATATTAAAACCGAGTCAAGGAAATAACTGCTATGTTTTTCCAAGTTTGGTTAATGCATTATCGTTGGCTGCGATTCGTCCGCTGACCAATAAATTGTTATTGACTGCGGCAAAGAAACTATCTGAATTAGTTACAGACGATGATATACGTCAAGGTAGTATGTATCCATCAATTGCTCGATTGCCAACAANTTAC AAAGAAGTCTC ] [+] EMBL CD132086 [ GTGCATTCACGCGTGATATTCTTCGTGAACTGTCGACAATCCATAAGACTCCTATCATATTTGTCCTGAGCAATCAATCAAATCTAGGAGAATGCACTTCCCAGATGGCTTATAAGGCTACAGAATGGCGATGTATATTTGTCAGTGGTTCTCCTTCAGAACCTGTTCGAACACCAGATAATCGTATATTAAAACCGAGTCAAGGAAATAACTGCTATGTTTTTCCAAGTTTGGTTAATGCATTATCGTTGGCTGCGATTCGTCCGCTGACCAATAAATTGTTATTGACTGCGGCAAAGAAACTATCTGAATTAGTTACAGACGATGATATACGTCAAGGTAGTATGTATCCATCAATTGCTCGATTGCCAACAA TTACAAAAGAAGTCTCTTGCGCTATTATGGAACAAGCATACAAGGAT ] [+] EMBL CD146347 [ GAGAATGCACTTCCCAGATGGCTTATAAGGCTACAGAATGGCGATGTATATTTGTCAGTGGTTCTCCTTCAGAACCTGTTCGAACATCAGATAATCGTATATTAAAACCGAGTCAAGGAAATAACTGCTACGTTTTTCCGAGTTTGGTTAATGCATTATCGTTGGCTGCGATTCGTCCGCTGACCAATAAATTGTTATTGACTGCGGCAAAGAAACTATCTGAATTAGTTACAGACGATGATATACGTCAAGGTAGTATGTATCCATCAATTGCTCGATTGCCAACAA TTACAAAAGAAGTCTCTTGCGCTATTATGGAACAAGCATACAAGGATAAAATTGCATTTTTTACTCCAGAACCAGATAATAA ] [-] EMBL CD076051 [ CGTATATTANAACCGAGTCAAGGAAATAACTGCTATGTTTTTCCAAGTTTGGTTAATGCATTATCGTTGGCTGCGATTCGTCCGCTGACCAATAAATTGTTATTGACTGCGGCAAAGAAACTATCTGAATTAGTTACAGACGATGATATACGTCAAGGTAGTATGTATCCATCAATTGCTCGATTGCCAACAA TTACAAAAGAAGTCTCTTGCGCTATTATGGAACAAGCATACAAGGATAAAATTGCATTTTTTACTCCAGAACCAGATAATAAGATGGAATTTATTGAATCTTACTATTATGATCATAGATATATTAATTTTACACCCGACCAATATGTTTGGTAGCCATTTTGACTCATTTCTATTCCGTGTTTCCTCTATCTATTTGAACAGAACTCGATTGATTACTTAAATTTTATCTTCAAACTGGTAAGAATGATTTCAACATATGTATTAATAATGTATGGCTATTTCTTACTATCTATTCGTTTTAAAGTGTTGATTTAAATATCGATATTCGTTGTATTCATACCTTTCTTCTGTAAGACTATTTTTCTGTCAAACGGTTTGTACGATCTGTGAAAAATGTTTTTTAGTAAATAACT ] [-] EMBL AI977322 [ gGGTAGTATGTATCCATCAATTGCTCGATTGCCAACAA TTACAAAAGAAGTCTCTTGCGCTATTATGGAACAAGCATACAAGGATAAAATTGCATTTTTTACTCCAGAACCAGATAATAAGATGGAATTTATTGAATCTTACTATTATGATCATAGATATATTAATTTTACACCCGACCAATATGTTTGGTAGCCATTTTGACTCATTTCTATTCCGTGTTTCCTCTATCTATTTGAACAGAACTCGATTGATTACTTAAATTTTATCTTCAAACTGGTAAGAATGATTTCAACATATGTATTGATAATGTATGGCTATTTCTTACTATCTATTCGTTTTAAAGTGTTGATCTAAATATCGATATTCGTTGTATTCATACCTTTCTTCTGTAAGACTATTTTTCTGTCAAACGGTTTGTACGATCTGTGAAAAATGTTTTTTAGTAAATAACTATACCTTTCAACTGTGGTAATTAAAAAAGTAATAACGTATGCCTTAGATGT] [-] EMBL AI977520 [ TATGGAACAAGCATTCAAGGATAAAATTGCATTTTTTACTCCAGAACCAGATAATAAGATGGAATTTATTGAATCTTACTATTATGATCATAGATATATTAATTTTACACCCGACCAATATGTTTGGTAGCCATTTTGACTCATTTCTATTCCGTGTTTCCTCTATCTATTTGAACAGAACTCGATTGATTACTTAAATTTTATCTTCAAACTGGTAAGAATGATTTCAACATATGTATTGATAATGTATGGCTATTTCTTACTATCTATTCGTTTTAAAGTGTTGATCTAAATATCGATATTCGTTGTATTCATACCTTTCTTCTGTAAGACTATTTTTCTGTCAAACGGTTTGTACGATCTGTGAAAAATGTTTTTTAGTAAATAACTATACCTTTCAACTGTGGTAATTAAAAAAGTAATAACGTATGCCTTAGATGT] consensusID : consensus_8884#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 444 fasta sequence [ACAGAACTGCAGCTCCCCGCGGTGGCTGTCGATCTAGAGCTAGCGGATCCCTGAGGTAGATGCATGCCGGTTAAATATGGTGTTGGGATGGACGGGTTTTCGATGGCTGCGATTCGTCCGCTGACCAATAAATTGTTATTGACTGCGGCAAAGAAACTATCTGAATTAGTTACAGACGATGATATACGTCAAGGTAGTATGTATACATCAATTGCTCGATTGCCAACAATTACAAAAGAAGTCTCTTGCGCTATTATGGAACAAGCATACAAGGATAAAATTGCATTTTTTTACTCCAGAACCAGATAATAAGATGGAATTTATTGAATCTTACTATTATGATCATAGATATATTAATTTTACACCCGACCAATATGTTTGGTAGCCATTTTGACTCATTTCTATTCCGTGTTTCCTCTATCTATTTGAACAGAACTCGATTGA] [+] EMBL BG931682 [ACAGAACTGCAGCTCCCCGCGGTGGCTGTCGATCTAGAGCTAGCGGATCCCTGAGGTAGATGCATGCCGGTTAAATATGGTGTTGGGATGGACGGGTTTTCGATGGCTGCGATTCGTCCGCTGACCAATAAATTGTTATTGACTGCGGCAAAGAAACTATCTGAATTAGTTACAGACGATGATATACGTCAAGGTAGTATGTATACATCAATTGCTCGATTGCCAACAATTACAAAAGAAGTCTCTTGCGCTATTATGGAACAAGCATACAAGGATAAAATTGCATTTTTTTACTCCAGAACCAGATAATAAGATGGAATTTATTGAATCTTACTATTATGATCATAGATATATTAATTTTACACCCGACCAATATGTTTGGTAGCCATTTTGACTCATTTCTATTCCGTGTTTCCTCTATCTATTTGAACAGAACTCGATTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8884#0 TTTTATGGTGGCGGGGGAGCTTCTATCGGTATAGCACGTTTGTTAGTACAAGCAATTATG 60 consensus_8884#1 ------------------------------------------------------------ consensus_8884#0 GAGGAGGGTTTCTCTGAAGATGAAGCTAAATCACGTATTTTTATAATGGATTCTAAAGGT 120 consensus_8884#1 ------------------------------------------------------------ consensus_8884#0 TTAATTGTTACAAGTCGTGAACTTAGTGCAGCAAAATCAGAATTCGCTCGTTCTGATTAT 180 consensus_8884#1 ------------------------------------------------------------ consensus_8884#0 CCTCAAATAGATTCACTTTTGGAAGCTATTCGATTCATTCGACCTTCTGTTTTGATTGGT 240 consensus_8884#1 ------------------------------------------------------------ consensus_8884#0 GCTTCTGCACAAAGCGGTGCATTCACGCGTGATATTCTTCGTGAACTGTCGACAATCCAT 300 consensus_8884#1 ------------------------------------------------------------ consensus_8884#0 AAGACTCCTATCATATTTGTCCTGAGCAATCAATCAAATCTAGGAGAATGCACTTCCCAG 360 consensus_8884#1 ------------------------------------------------------------ consensus_8884#0 ATGGCTTATAAGGCTACAGAATGGCGATGTATATTTGTCAGTGGTTCTCCTTCAGAACCT 420 consensus_8884#1 --------------------------------ACAGAACTGCAGCTCCCCG-CGGTGGCT 27 * * * * ** ** * * ** consensus_8884#0 GTTCGAACACCAGATAATCGTATATTAAAACCGAGTCAAGGAAATAACTGCTATGTTTTT 480 consensus_8884#1 GT-CGATCTAGAGCTAGCGGATCCCTGAGGTAGATGCATGCCGGTTA--AATATGGTGTT 84 ** *** * ** ** * * * ** ** * * * **** * ** consensus_8884#0 CCAAGTTTGGTTAATGCATTATCGTTGGCTGCGATTCGTCCGCTGACCAATAAATTGTTA 540 consensus_8884#1 G------GGATGGACGGGTTTTCGATGGCTGCGATTCGTCCGCTGACCAATAAATTGTTA 138 * * * * ** *** *********************************** consensus_8884#0 TTGACTGCGGCAAAGAAACTATCTGAATTAGTTACAGACGATGATATACGTCAAGGTAGT 600 consensus_8884#1 TTGACTGCGGCAAAGAAACTATCTGAATTAGTTACAGACGATGATATACGTCAAGGTAGT 198 ************************************************************ consensus_8884#0 ATGTATCCATCAATTGCTCGATTGCCAACAATTACAAAAGAAGTCTCTTGCGCTATTATG 660 consensus_8884#1 ATGTATACATCAATTGCTCGATTGCCAACAATTACAAAAGAAGTCTCTTGCGCTATTATG 258 ****** ***************************************************** consensus_8884#0 GAACAAGCATACAAGGATAAAATTGCATTTTTT-ACTCCAGAACCAGATAATAAGATGGA 719 consensus_8884#1 GAACAAGCATACAAGGATAAAATTGCATTTTTTTACTCCAGAACCAGATAATAAGATGGA 318 ********************************* ************************** consensus_8884#0 ATTTATTGAATCTTACTATTATGATCATAGATATATTAATTTTACACCCGACCAATATGT 779 consensus_8884#1 ATTTATTGAATCTTACTATTATGATCATAGATATATTAATTTTACACCCGACCAATATGT 378 ************************************************************ consensus_8884#0 TTGGTAGCCATTTTGACTCATTTCTATTCCGTGTTTCCTCTATCTATTTGAACAGAACTC 839 consensus_8884#1 TTGGTAGCCATTTTGACTCATTTCTATTCCGTGTTTCCTCTATCTATTTGAACAGAACTC 438 ************************************************************ consensus_8884#0 GATTGATTACTTAAATTTTATCTTCAAACTGGTAAGAATGATTTCAACATATGTATTGAT 899 consensus_8884#1 GATTGA------------------------------------------------------ 444 ****** consensus_8884#0 AATGTATGGCTATTTCTTACTATCTATTCGTTTTAAAGTGTTGATCTAAATATCGATATT 959 consensus_8884#1 ------------------------------------------------------------ consensus_8884#0 CGTTGTATTCATACCTTTCTTCTGTAAGACTATTTTTCTGTCAAACGGTTTGTACGATCT 1019 consensus_8884#1 ------------------------------------------------------------ consensus_8884#0 GTGAAAAATGTTTTTTAGTAAATAACTATACCTTTCAACTGTGGTAATTAAAAAAGTAAT 1079 consensus_8884#1 ------------------------------------------------------------ consensus_8884#0 AACGTATGCCTTAGATGT 1097 consensus_8884#1 ------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||