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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8885#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1046 fasta sequence
[CGGAGCCAATATTCGGCACGAGGGCAAAAATGGAAATTTGCAAAGAAGAACTTATGAATCCTATCAAACAAGATGTTAAAAATAATAAACTGCGCTATGTAAATAATGTATTTCCACATAAAGGTTATATCTGGAATTATGGTGCCCTACCTCAAACATGGGAAGATCCAAACCATGTAGATGAAAATACTAAAGCTAAAGGAGATAACGATCCTATTGATGTGTGTGAAATAGGTTCGAAAATATGGCCTCCTGGATCAATAATACCTGTCAAAGTATTAGGCATATTGGCAATGATAGATGAAGGTGAAACTGACTGGAAAGTTATAGTTATAAATGCAGCTGATCCAATGGCTGATAAACTAAATGACATTCATGATGTGGATACTCATATGCCGGGACTTCTGAAGGCTACACGAGACTGGTTTAAGTACTACAAGGTTCCTACAGGAAAGCCCGAAAATACATTTGCCTTCAATGGAGAGTTCAAGAACA-AAGAATTCGCCACAAAAATTATCTCCCAAACACATGAACAGTGGCAGAAACTGATATCTACCAAAGTTGAAGCTGGTTCTATCATACGAGCAAATGTTACTGTGAAAGGAAGTCCCTACATGGTATCAAAAGAAGATTTTCTCGATGCTTTGCAGAAGCACGACGCTTTTACACGCGGAAGTGAACCAACGG-ATCAAGCGA-TTGATCAATGGCATTTTTGCAACCCAAATATTTAATTCTGCTTCAATGGTCGACTATTATAATCATCGTTGTGAACTAATCATGGTCCACTCCACAAAAG-ATAATTGCAAATCAAAATCTACTCATCTTATAGTATTTAATAAAAAAAAACTCAGCGTATGACTGTTATTTACCTTTTTTGGTTGTAACCCT-AATACTCGTCTGTATA-GTCTATNGATATG-TTTTTTAAAAAATTATTCCAG-TAAAG-TATACAAA-ATACACATATGTTTGGGAATGAATTCTTCTTTTTCCCCCTTAAACAATTGAAGTATATAGGCGTAACCTAATTGACTAAATTGAATTTTATTTCT]
[+] EMBL CD081563 [CGGAGCCAATATTCGGCACGAGGGCAAAAATGGAAATTTGCAAAGAAGAACTTATGAATCCTATCAAACAAGATGTTAAAAATAATAAACTGCGCTATGTAAATAATGTATTTCCACATAAAGGTTATATCTGGAATTATGGTGCCCTACCTCAAACATGGGAAGATCCAAACCATGTAGATGAAAATACTAAAGCTAAAGGAGATAACGATCCTATTGATGTGTGTGAAATAGGTTCGAAAATATGGCCTCCTGGATCAATAATACCTGTCAAAGTATTAGGCATATTGGCAATGATAGATGAAGGTGAAACTGACTGGAAAGTTATAGTTATAAATGCAGCTGATCCAATGGCTGATAAACTAAATGACATTCATGATGTGGATACTCATATGCCGGGACTTCTGAAGGCTACACGAGACTGGTTTAAGTACTACAAGGTTCCTACAGGAAAGCCCGAAAATACATTTGCCTTCAATGGAGAGTTCAAGAACA AAGAATTCGCCACAAAAATTATCTCCCAAACACATGAACAGTGGCAGAAACTGATATCTACCAAAGTTGAAGCTGGTTCTATCATACGAGCAAATGTTACTGTGAAAGGAAGTCCCTACATGGTATCAAAAGAAGATTTTCTCGATGCTTTGCAGAAGCACGACGCTTTTACACGCGGAAGTGAACCAACGG ATCAAGCGA TTGATCAATGGCATTTTTGCAACCCAAATATTTAATTCTGCTTCAATGGTCGACTATTATAATCATCGTTGTGAACTAATCATGGTCCACTCCACAAAAGAATAATTGC AATCAAAATCTACTCATCTTATAGTATTTAATAAAAAAAAACTCAGCGTATGACTGTTATTTACCTTTTTTGGTTGTAACCCT AATACTCGTCTGTATA GTCTATNGATATG TTTTTTAAAAAATTATTCCAG TAAAG TATACAAA ATACACA ]
[-] EMBL CD162906 [ ACAAGATGTTAAAAATAATAAACTGCGCTATGTAAATAATGTATTTCCACATAAAGGTTATATCTGGAATTATGGTGCCCTACCTCAAACATGGGAAGATCCAAACCATGTAGATGAAAATACTAAAACTAAAGGAGATAACGATCCTATTGATGTGTGTGAAATAGGTTCGAAAATATGGCCTTCCGGATCAATAATACCCGTCAAAGTATTAGGCATATTGGCAATGATAGATGAAGGTGAAACTGACTGGAAAGTTATAGTTATAAATGCAGCTGATCCAATGGCTGATAAACTAAATGACATTCATGATGTGGATACTCATATGCCGGGACTTCTGAAGGCTACACGAGACTGGTTTAAGTACTACAAGGTTCCTACAGGAAAGCCCGAAAATACATTTGCCTTCAATGGAGAGTTCAAGAACA AAGAATTCGCCACAAAAATTATCTCCCAAACACATGAACAGTGGCAGAAACTGATATCTACCA ]
[+] EMBL CD165111 [ AAATACTAAAGCTAAAGGAGATAACGATCCTATTGATGTGTGTGAAATAGGTTCGAAAATATGGCCTCCTGGATCAATAATACCTGTCAAAGTATTAGGCATATTGGCAATGATAGATGAAGGTGAAACTGACTGGAAAGTTATAGTTATAAATGCAGCTGATCCAATGGCTGATAAACTAAATGACATTCATGATGTGGATACTCATATGCCGGGACTTCTGAAGGC ]
[+] EMBL CD181404 [ tgaaGCTGATAAACTAAATGACATTCATGATGTGGATACTCATATGCCGGGACTTCTGAAGGCTACACGAGACTGGTTTAAGTACTACAAGGTTCCTACAGGAAAGCCCGAAAATACATATGCCTTCAATGGAGAGTTCAAGAACA AAGAATTCGCCACAAAAATTATCTCCCAAACACATGAACAGTGGCAGAAACTGATATCTACCAAAGTTGAAGCTGGTTCTATCATACGAGCAAATGTTACTGTGAAAGGAAGTCCCTACATGGTATCAAAAGAAGATTTTCTCGATGCTTTGCAGAAGCACGACGCTTTTACACGCGGAAGTGAACCAACGGNATC AGCGATTTGATC ATGGCATTTTTGCActc ]
[-] EMBL CD145375 [ ATNTGCCTCNAATGNAGAGTTCAAG ACANAAGATTTCG CACAAAAATTATCTCCCAAACACATGAACAGTGGCAGAAACTGATATCTACCANAGTTGAAGCTGGTTCTATCATACGAGCAAATGTTACTGTGAAAGGAAGTCCCTACATGGTATCAAAAGAAGATTTTCTCGATGCTTTGCAGAAGCACGACGCTTTTACACGCGGAAGTGAACCAACGG ATCAAGCGA TTGATCAATGGCATTTTTGCAACCCAAATATTTAATTCTGCTTCAATGGTCGACTATTATAATCATCGTTGTGAACTAATCATGGTCCACTCCACAAAAG ATAATTGCAAATCAAAATCTACTCATCTTATAGTATTTAATAAAAAAAAACTCAGCGTATGACTGTTATTTACCTTTTTTGGTTGTAACCCTAAATACTCGTCTGTATAGGTCTATTGATATGTTTTTTTAAAAAATTAGTTCAGTTAAAGTTATACAAATATACACATATGTTTGGGAATGAATTCTTCTTTTTCCCCCTTAAACAATTGAAGTATATAGGCGTAACCTAATTGACTAAATTGAATTTTATTTCT]
[-] EMBL CD142578 [ TGGTTCTATCATACGAGCAAATGTTACTGTGAAAGGAAGTCCCTACATGGTATCAAAAGAAGATTTTCTCGATGCTTTGCAGAAGCACGACGCTTTTACACGCGGAAGTGAACCAACGG ATCAAGCGA TTGATCAATGGCATTTTTGCAACCCAAATATTTAATTCTGCTTCAATGGTCGACTATTATAATCATCGTTGTGAACTAATCATGGTCCACTCCACAAAAG ATAATTGCAAATCAAAATCTACTCATCTTATAGTATTTAATAAAAAAAAACTCAGCGTATGACTGTTATTTACCTTTTTTGGTTGTAAC ]
consensusID : consensus_8885#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 236 fasta sequence
[CCTCGCTGGACAAATGCAAAAATGGAAATTTGCAAAGAAGAACTTATGAATCCTATCAAACAAGATGTTAAAAATAATAAACTGCGCTATGTAAATAATGTATTTCCACATAAAGGTTATATCTGGAATTATGGTGCCCTACCTCAAACATGGGAAGATCCAAACCATGTAGATGAAAATACTAAAGCTAAAGGAGATAACGATCCTATTGATGTGTGTGAAATAGGTTCGAAAAT]
[+] EMBL CD078192 [CCTCGCTGGACAAATGCAAAAATGGAAATTTGCAAAGAAGAACTTATGAATCCTATCAAACAAGATGTTAAAAATAATAAACTGCGCTATGTAAATAATGTATTTCCACATAAAGGTTATATCTGGAATTATGGTGCCCTACCTCAAACATGGGAAGATCCAAACCATGTAGATGAAAATACTAAAGCTAAAGGAGATAACGATCCTATTGATGTGTGTGAAATAGGTTCGAAAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8885#0 CGGAGCCAATATTCGGCACGAGGGCAAAAATGGAAATTTGCAAAGAAGAACTTATGAATC 60
consensus_8885#1 --------CCTCGCTGGACAAATGCAAAAATGGAAATTTGCAAAGAAGAACTTATGAATC 52
* * ** * *************************************
consensus_8885#0 CTATCAAACAAGATGTTAAAAATAATAAACTGCGCTATGTAAATAATGTATTTCCACATA 120
consensus_8885#1 CTATCAAACAAGATGTTAAAAATAATAAACTGCGCTATGTAAATAATGTATTTCCACATA 112
************************************************************
consensus_8885#0 AAGGTTATATCTGGAATTATGGTGCCCTACCTCAAACATGGGAAGATCCAAACCATGTAG 180
consensus_8885#1 AAGGTTATATCTGGAATTATGGTGCCCTACCTCAAACATGGGAAGATCCAAACCATGTAG 172
************************************************************
consensus_8885#0 ATGAAAATACTAAAGCTAAAGGAGATAACGATCCTATTGATGTGTGTGAAATAGGTTCGA 240
consensus_8885#1 ATGAAAATACTAAAGCTAAAGGAGATAACGATCCTATTGATGTGTGTGAAATAGGTTCGA 232
************************************************************
consensus_8885#0 AAATATGGCCTCCTGGATCAATAATACCTGTCAAAGTATTAGGCATATTGGCAATGATAG 300
consensus_8885#1 AAAT-------------------------------------------------------- 236
****
consensus_8885#0 ATGAAGGTGAAACTGACTGGAAAGTTATAGTTATAAATGCAGCTGATCCAATGGCTGATA 360
consensus_8885#1 ------------------------------------------------------------
consensus_8885#0 AACTAAATGACATTCATGATGTGGATACTCATATGCCGGGACTTCTGAAGGCTACACGAG 420
consensus_8885#1 ------------------------------------------------------------
consensus_8885#0 ACTGGTTTAAGTACTACAAGGTTCCTACAGGAAAGCCCGAAAATACATTTGCCTTCAATG 480
consensus_8885#1 ------------------------------------------------------------
consensus_8885#0 GAGAGTTCAAGAACAAAGAATTCGCCACAAAAATTATCTCCCAAACACATGAACAGTGGC 540
consensus_8885#1 ------------------------------------------------------------
consensus_8885#0 AGAAACTGATATCTACCAAAGTTGAAGCTGGTTCTATCATACGAGCAAATGTTACTGTGA 600
consensus_8885#1 ------------------------------------------------------------
consensus_8885#0 AAGGAAGTCCCTACATGGTATCAAAAGAAGATTTTCTCGATGCTTTGCAGAAGCACGACG 660
consensus_8885#1 ------------------------------------------------------------
consensus_8885#0 CTTTTACACGCGGAAGTGAACCAACGGATCAAGCGATTGATCAATGGCATTTTTGCAACC 720
consensus_8885#1 ------------------------------------------------------------
consensus_8885#0 CAAATATTTAATTCTGCTTCAATGGTCGACTATTATAATCATCGTTGTGAACTAATCATG 780
consensus_8885#1 ------------------------------------------------------------
consensus_8885#0 GTCCACTCCACAAAAGATAATTGCAAATCAAAATCTACTCATCTTATAGTATTTAATAAA 840
consensus_8885#1 ------------------------------------------------------------
consensus_8885#0 AAAAAACTCAGCGTATGACTGTTATTTACCTTTTTTGGTTGTAACCCTAATACTCGTCTG 900
consensus_8885#1 ------------------------------------------------------------
consensus_8885#0 TATAGTCTATNGATATGTTTTTTAAAAAATTATTCCAGTAAAGTATACAAAATACACATA 960
consensus_8885#1 ------------------------------------------------------------
consensus_8885#0 TGTTTGGGAATGAATTCTTCTTTTTCCCCCTTAAACAATTGAAGTATATAGGCGTAACCT 1020
consensus_8885#1 ------------------------------------------------------------
consensus_8885#0 AATTGACTAAATTGAATTTTATTTCT 1046
consensus_8885#1 --------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||