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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8895#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1080 fasta sequence
[CTATCATCTCAGTCGTACAGTAGTTTGAATTTTAATAGTTCAGTATGTGACAACTTTACTAATATCAACCCACATTCAATATTCATGACATCTAATGAACCTAGTTGTTTTCAATTCGGGATGAGAAGTCCCACTGATGATAAGCCCAACTCTTTTGATTTCACTACATTTGGTCCCGTTGGGTCTTCATCACCAGCCGGTGCTTTCATCCACTCAAATTTAATTAGTTCTAACTGCAATAGTTCTATCTTGTCAAATTTATCTTCAACAGGTTTACAGAGTAGACAAGTGTGTTTAGATTCACAAAATACTGATACCTTAATTTTTCCTATGATGTCTCCATCAGTTTCGCATTCAGATGCCACCTCGAATTCATCTACGATGTAGTAGCGATCAGACACTATAAGAATTGAGTTGTTTTTGTCTTATCATACGTTTACATCAAAAATTCTTA-TTTTTGCTGTATTTCCGTTATTAATTTTTATCTGGACAGCAGTATGGAAAGAAAACTAAGTTTTATCAACTGTTTAAGAGCTTTTCGAAACTCGTGATTCGTCTTACGGGGACCCAACTTTGCATTTTGATAACTTTCAGAGAGTTTGACCTTTTTTCTGGAGTTTATGTACCCAAATTTTATTGTTACTATTATTACTCTTGATATATTTTTT-TGCGTTATTATATCGTAATCGGTCAACATAACAGCAGAATCTGCTTTAAATGGTTTGTCTCAGCTGCCTATTTGTCTCTTCTAAGATTTGTCTTCTAGACCCTTCCAATCACTTTCTTTAATATCTTCATACGAATTTTGCTATTTCTTTTGTTTCCGAACTAAATATTATGGTCTAGTCGTTGCGTTTTCGTGTTAATTTCTTGTGTTATCCTTTATGATTTTGTTCTTACCTTTCCCTTTTTCAATGTGTTGCTTAACGCTTTGTAGTCGATACTAAAATTGTGGTCTTTGTTTTGTATTCACAACTTATGCACACTTTTCCAACTCATATTTAATATTCATACGTTTAAGAGTGTCTCAATGGTTGGCTAGTCATCTTTTTTCCTGTTTCTTATCTTTCATGTTCAGTT]
[+] EMBL CD124583 [CTATCATCTCAGTCGTACAGTAGTTTGAATTTTAATAGTTCAGTATGTGACAACTTTACTAATATCAACCCACATTCAATATTCATGACATCTAATGAACCTAGTTGTTTTCAATTCGGGATGAGAAGTCCCACTGATGATAAGCCCAACTCTTTTGATTTCACTACATTTGGTCCCGTTGGGTCTTCATCACCAGCCGGTGCTTTCATCCACTCAAATTTAATTAGTTCTAACTGCAATAGTTCTATCTTGTCAAATTTATCTTCAACAGGTTTACAGAGTAGGCAAGTGTGTTTAGATTCACAAAATACTGATACCTTAATTTTTCCTATGATGTCTCCATCAGTTTCGCATTCAGATGCCACCTCGAATTCATCTACGATGTAGTAGCGATCAGACACTATAAGAATTGAGTTGTTTTTGTCTTATCATACGTTTACATCAAAAATTCTTA TTTTTGCTGTATTTCCGTTATTAATTTTTATCTGGACAGCAGTATGGAAAGAAAACTAAGTTTTATCAACTGTTTAAGAGCTTTTCGAAA ]
[-] EMBL CD160741 [ GCAATAGTTCTATCTTGTCAAATTTATCTTCAACAGGTTTACAGAGTAGACAAGTGTGTTTAGATTCACAAAATACTGATACCTTAATTTTTCCTATGATGTCTCCATCAGTTTCGCATTCAGATGCCACCTCGAATTCATCTACGATGTAGTAGCGATCAGACACTATAAGAATTGAGTGGTTTTTGTCTTATCATACGTTTACATCAAAAATTCTTA TTTTTGCTGTATTTCCGTTATTAATTTTTATCTGGACAGCAGTATGGAAAGAAAACTAAGTTTTATCAACTGTTTAAGAGCTTTTCGAAACTCGTGATTCGTCTTACGGGGACCCAACTTTGCATTTTGATAACTTTCAGAGAGTTTGACCTTTTTTCTGGAGTTTATGTACCCAAATTTTATTGTTACTATTATTACTCTTGATATATTTTTT TGCGTTATTATATCGTAATCGGTCAACATAACAGCAGAATCTGCTTTAAATGGTTTGTCTCAGCTGCCTATTTGTCTCTTCTAAGATTTGTCTTCTAGACCCTTCCA ]
[-] EMBL CD160714 [ GCAATAGTTCTATCTTGTCAAATTTATCTTCAACAGGTTTACAGAGTAGACAAGTGTGTTTAGATTCACAAAATACTGATACCTTAATTTTTCCTATGATGTCTCCATCAGTTTCGCATTCAGATGCCACCTCGAATTCATCTACGATGTAGTAGCGATCAGACACTATAAGAATTGAGTTGTTTTTGTCTTATCATACGTTTACATCAAAAATTCTTATTTTTTGCTGTATTTCCGTTATTAGTTTTTATCTGGACAGCAGTATGGAAAGAAAACTAAGTTTTATCAACTGTTTAAGAGCTTTTCGAAACTCGTGATTCGTCTTACGGGGACCCAACTTTGCATTTTGATAACTTTCAGAGAGTTTGACCTTTTTTCTGGAGTTTATGTACCCAAATTTTATTGTTACTATTATTACTCTTGATATATTTTTTNTGCGTTATTATATCGTAATCGGTCAACATAACAGCAGAATCTGCTTTAAATGGTTTGTCTCAGCTGCCTATTTGTCTCTTCTAAGATTTGT ]
[-] EMBL CD160721 [ GCAATAGTTCTATCTTGTCAAATTTATCTTCAACAGGTTTACAGAGTAGACAAGTGTGTTTAGATTCACAAAATACTGATACCTTAATTTTTCCTATGATGTCTCCATCAGTTTCGCATTCAGATGCCACCTCGAATTCATCTACGATGTAGTAGCGATCAGACACTATAAGAATTGAGTTGTTTTTGTCTTATCATACGTTTACATCAAAAGTTCTTA TTTTTGCTGTATTTCCGTTATTAATTTTTATCTGGACAGCAGTATGGAAAGAAAACTAAGTTTTATCAACTGTTTAAGAGCTTTTCGAAACTCGTGATTCGTCTTACGGGGACCCAACTTTGCATTTTGATAACTTTCAGAGAGTTTGACCTTTTTTCTGGAGTTTATGTACCCAAATTTTATTGTTACTATTATTACTCTTGATATATTTTTT TGCGTTATTATATCGTAATCGGTCAACATAACAGCAGAATCTGCTTTAAATGGTTTGTCTCAGCTGCCTATTTGTCTCTTCTAAGATTTGT ]
[+] EMBL CD084053 [ acgaggCAAATTTATCTTCAACAGGTTTACAGAGTAGACAAGTGTGTTTAGATTCACAAAATACTGATACCTTAATTTTTCCTATGATGTCTCCATCAGTTTCGCATTCAGATGCCACCTCGAATTCATCTACGATGTAGTAGCGATCAGACACTATAAGAATTTAGTTGTTTTTGTCTTATCATACGTTTACATCAAAAATTCTTA TTTTTGCTGTATTTCCGTTATTAATTTTTATCTGGACAGCAGTATGGAAAGAAAACTAAGTTTTATCAACTGTTTAAGAGCTTTTCGAAACTCGTGATTCGTCTTACGGGGACCCAACTTTGCATTTTGATAACTTTCAGAGAGTTTGACCTTTTTTCTGGAGTTTATGTACCCNAATTTTATTGTTACTATTATTACTCTT ]
[-] EMBL CD151663 [ TTTTTTCTGGAGTTTATGAACCCAAATTTTATTGTTACTATTATTACTCTTGATATATTTTTN TGCGTTATTATATCGTAATCGGTCAACATAACAGCAGAATCTGCTTTAAATGGTTTGTCTCAGCTGCCTATTTGTCTCTTCTAAGATTTGTCTTCTAGACCCTTCCAATCACTTTCTTTAATATCTTCATACGAATTTTGCTATTTCTTTTGTTTCCGAACTAAATATTATGGTCTAGTCGTTGCGTTTTCGTGTTAATTTCTTGTGTTATCCTTTATGATTTTGTTCTTACCTTTCCCTTTTTCAATGTGTTGCTTAACGCTTTGTAGTCGATACTAAAATTGTGGTCTTTGTTTTGTATTCACAACTTATGCACACTTTTCCAACTCATATTTAATATTCATACGTTTAAGAGTGTCTCAATGGTTGGCTAGTCATCTTTTTTCCTGTTTCTTATCTTTCATGTTCAGTT]
consensusID : consensus_8895#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 315 fasta sequence
[TATGGAAACAAACTAAAGTTTTATCAACTGTTTAAGAGCTTTCCGAAACTAGTGATTCGTCTTACGGGGACCCAACTGTGCGTTTTGATCCCTTTCAGAGAGTGTGACCTTTTTTCTGGAGTTTATGTACCCAAATTTTACTGTTGCTACTATGACTCTTGATATATTTTTTTGCGTTATTATATCGTAATCGGTCAACATAACAGCAGAATCTGCTTTAAATGGTTTGTCTCAGCTGCCTATTTGTCTCTTCTAAAAAATGTCTTCTAGACCCGCCGTCTATCTCAATACATTATTTAACTCGGACCCTGCAAC]
[-] EMBL BG930157 [TATGGAAACAAACTAAAGTTTTATCAACTGTTTAAGAGCTTTCCGAAACTAGTGATTCGTCTTACGGGGACCCAACTGTGCGTTTTGATCCCTTTCAGAGAGTGTGACCTTTTTTCTGGAGTTTATGTACCCAAATTTTACTGTTGCTACTATGACTCTTGATATATTTTTTTGCGTTATTATATCGTAATCGGTCAACATAACAGCAGAATCTGCTTTAAATGGTTTGTCTCAGCTGCCTATTTGTCTCTTCTAAAAAATGTCTTCTAGACCCGCCGTCTATCTCAATACATTATTTAACTCGGACCCTGCAAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8895#0 CTATCATCTCAGTCGTACAGTAGTTTGAATTTTAATAGTTCAGTATGTGACAACTTTACT 60
consensus_8895#1 ------------------------------------------------------------
consensus_8895#0 AATATCAACCCACATTCAATATTCATGACATCTAATGAACCTAGTTGTTTTCAATTCGGG 120
consensus_8895#1 ------------------------------------------------------------
consensus_8895#0 ATGAGAAGTCCCACTGATGATAAGCCCAACTCTTTTGATTTCACTACATTTGGTCCCGTT 180
consensus_8895#1 ------------------------------------------------------------
consensus_8895#0 GGGTCTTCATCACCAGCCGGTGCTTTCATCCACTCAAATTTAATTAGTTCTAACTGCAAT 240
consensus_8895#1 ------------------------------------------------------------
consensus_8895#0 AGTTCTATCTTGTCAAATTTATCTTCAACAGGTTTACAGAGTAGACAAGTGTGTTTAGAT 300
consensus_8895#1 ------------------------------------------------------------
consensus_8895#0 TCACAAAATACTGATACCTTAATTTTTCCTATGATGTCTCCATCAGTTTCGCATTCAGAT 360
consensus_8895#1 ------------------------------------------------------------
consensus_8895#0 GCCACCTCGAATTCATCTACGATGTAGTAGCGATCAGACACTATAAGAATTGAGTTGTTT 420
consensus_8895#1 ------------------------------------------------------------
consensus_8895#0 TTGTCTTATCATACGTTTACATCAAAAATTCTTATTTTTGCTGTATTTCCGTTATTAATT 480
consensus_8895#1 ------------------------------------------------------------
consensus_8895#0 TTTATCTGGACAGCAGTATGGAAAGAAAACTAAGTTTTATCAACTGTTTAAGAGCTTTTC 540
consensus_8895#1 ----------------TATGGAAACAAACTAAAGTTTTATCAACTGTTTAAGAGCTTTCC 44
******** *** *************************** *
consensus_8895#0 GAAACTCGTGATTCGTCTTACGGGGACCCAACTTTGCATTTTGATAACTTTCAGAGAGTT 600
consensus_8895#1 GAAACTAGTGATTCGTCTTACGGGGACCCAACTGTGCGTTTTGATCCCTTTCAGAGAGTG 104
****** ************************** *** ******* ************
consensus_8895#0 TGACCTTTTTTCTGGAGTTTATGTACCCAAATTTTATTGTTACTATTATTACTCTTGATA 660
consensus_8895#1 TGACCTTTTTTCTGGAGTTTATGTACCCAAATTTTACTGTTGCTACTATGACTCTTGATA 164
************************************ **** *** *** **********
consensus_8895#0 TATTTTTTTGCGTTATTATATCGTAATCGGTCAACATAACAGCAGAATCTGCTTTAAATG 720
consensus_8895#1 TATTTTTTTGCGTTATTATATCGTAATCGGTCAACATAACAGCAGAATCTGCTTTAAATG 224
************************************************************
consensus_8895#0 GTTTGTCTCAGCTGCCTATTTGTCTCTTCTAAGATTTGTCTTCTAGACCCTTCCAATCAC 780
consensus_8895#1 GTTTGTCTCAGCTGCCTATTTGTCTCTTCTAAAAAATGTCTTCTAGACCCG-CCGTCTAT 283
******************************** * ************** ** *
consensus_8895#0 TTTCTTTAATATCTTCATACGAATTTTGCTATTTCTTTTGTTTCCGAACTAAATATTATG 840
consensus_8895#1 CTCAATACATTATTTAACTCGGACCCTGCAAC---------------------------- 315
* * ** ** * ** * *** *
consensus_8895#0 GTCTAGTCGTTGCGTTTTCGTGTTAATTTCTTGTGTTATCCTTTATGATTTTGTTCTTAC 900
consensus_8895#1 ------------------------------------------------------------
consensus_8895#0 CTTTCCCTTTTTCAATGTGTTGCTTAACGCTTTGTAGTCGATACTAAAATTGTGGTCTTT 960
consensus_8895#1 ------------------------------------------------------------
consensus_8895#0 GTTTTGTATTCACAACTTATGCACACTTTTCCAACTCATATTTAATATTCATACGTTTAA 1020
consensus_8895#1 ------------------------------------------------------------
consensus_8895#0 GAGTGTCTCAATGGTTGGCTAGTCATCTTTTTTCCTGTTTCTTATCTTTCATGTTCAGTT 1080
consensus_8895#1 ------------------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||