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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8896#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1020 fasta sequence
[TCACAAACTGTCTGACAACCTCGCCATGTTCATTTTCAACTACAAGTACTTCTTCAGGACGAGCCATGCGTGAGATCATGATTCTTCGAAGATTAGACAAAATTGGTGCACATTGTCTACTTCGACCTTCACCAGTGGTGGAATCAGCCAATGTTCCAACTACCGTAGTTGTAAGACTTTCTCGATATAGATCAGAAACCAAAATATTCCAGTATTCTAAGCAAATCTTGAATATTTCCCTTTCCTCGACTTCGGAGAGCATCAAGAGGTAAGCATAAGCATCTTGTAATTTC-CAAATAAGCTCAGGTTTTTCGACGAGACTGATATGACCTTTGAGGAATGTTGTGT-AAAAAAATGCCAGGTTTTGGATGAAACTCTGTTCATCATTACTTCCGCGCTCATATGCTTCTTTTAGCCGTGTTTCTAAAGGCAACATTTCTTTTAGTTTATCGGTAGTAGAAACAAACAATTCTACTAGCTGGGTCTCGTATTCGTCAACTAATACACCCGCTATTTCAGCAAGGCATTTCAAAGTAACATTTCGGAACAGAGGGACATTGAAGAATTTAAATACTAAGGTTTGTATTAGATTAGTTTCAAATATATATCCTAAGGGAATCCAGTGCATAAAACGAAGTAACGTCTCCAGCGTCGACACAACTAGAGATGCATTTTGGGAATTTTCCAAGACATATTGACAAAGCTGAAAAATCAAACTGAACTGTTGACACATAGAGTCTTTTAAATGTCTGGCTTTTGTTTGAGTCATTTGACCCAAAGAGAAGTCGAAAACTTCTTCGCTTAAAAGACGCAAGATGACCATATTGTTTTGACATAAAGATTCGTTTGTCTTACTTGCCCCAACAATGTCACTAATGAATGTTGACCAGTTAATAGGCCATTCATGTTTTAATATCTCAACCAGAATCATATTTAACTTGCCAAGATACGTCTTCTCCGACTCCAAGAGCTCCGAACTAGACGATGTTTGGATTATCAAACCAACAATGAGGAAGCCAG]
[-] EMBL CD113360 [TCACAAACTGTCTGACAACCTCGCCATGTTCATTTTCAACTACAAGTACTTCTTCAGGACGAGCCATGCGTGAGATCATGATTCTTCGAAGATTAGACAAAATTGGTGCACATTGTCTACTTCGACCTTCACCAGTGGTGGAATCAGCCAATGTTCCAAGTACCGTAGTTGTAAGACTTTCTCGATATAGATCAGCAACCACAATATTCCAGTATTCTAAGCAAATCTTGAATATTTCCCTTTCCTGGAGTTCGGAGAGCACCAAGAGGTAAGCATAAGCATCTTGTAATTTCACAAATAAGCTCAGGTTTTTCGACGAGACTGATATGACCTTTGAGGAATGTTGTGTCAAAAAAATGCCAGGTTTTG ]
[+] EMBL CD094035 [ CCATGCGTGAAATCATGATCCTTCGAAGCTTAGACAAAATTGGTGCATATTGTTTACTTCGACCTTCACCAGTGGTGGATTCAGCCAATGTCCCAACTACCGTAGTTGTAAGACTTTCTCGATATAGATCAGAAACCAAAATATTCCAGTATTCTAAGCAAATCTTGAATATTTCCCTTTCCTCGACTTCGGGGAGCATCAAGAGGTAAGCATAAGCATCTCGTAATTTC CAAATAAGCTCAGGTTTTTCGACGAGACTGCTATGACCTTTGAGGAATGTTGTGT AAAAAATTGCCAGGTTTTGGATGAAACTCTGTTCATCATTACTTCCGCGCTCATATGCTTCTTTTAGCCGTGTTTCTAAAGGCAACATTTCTTTTAGTTTATCGGTAGTAGAAACAAACAATTCTACTAGCTGGGTCTCGTATTCGTCAACTAA ]
[+] EMBL CD072585 [ AATGTTCCAACTACCGTAGTTGTAAGACTTTCTCGATATAGATCAGAAACCAAAATATTCCAGTATTCTAAGCAAATCTTGAATATTTCCCTTTCCTCGACTTCGGAGAGCATCAAGAGGTAAGCAT ]
[-] EMBL CD153645 [ CGGTAGTAGAAACAAACAATTCTACTAGCTGGGTCTCATATTCGTCAACTAATACACCCGCTATTTCAGCAAGGCATTTCAAAGTAACATTTCGGAACAGAGGGACATTGAAGAATTTAAATACTAAGGTTTGTATTAGATTAGTTTCAAATATATATCCTAAGGGAATCCAGTGCATAAAACGAAGTAACGTCTCCAGCGTCGACACAACTAGAGATGCATTTTGGGAATTTTCCAAGACATATTGACAAAGCTGAAAAATCAAACTGAACTGTTGACACATAGAGTCTTTTAAATGTCTGGCTTTTGTTTGAGTCATTTGACCCAAAGAGAAGTCGAAAACTTCTTCGCTTAAAAGACGCAAGATGACCATATTGTTTTGACATAAAGATTCGTTTGTCTTACTTGCCCCAACAATGTCACTAATGAATGTTGACCAGTTAATAGGCCATTCATGTTTTAATATCTCAACCAGAATCATATTTAACTTGCCAAGATACGTCTTCTCCGACTCCAAGAGCTCCGAACTAGACGATGTTTGGATTATCAAACCAACAATGAGGAAGCCAG]
consensusID : consensus_8896#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 673 fasta sequence
[TCTTTAAAATGTTTGGCTTNTGTNTGAGTCATNTGACNCAAAGAGAAGTCGANAACTTCTTCGCTTAAAAGACGCAAGATGACCATATTGTTNTGACATAAAGATTCGTTTGTCTTACTTGCCCCAACAATGTCACTAATGAATGTTGACCAGTTATTAGGCCATTCATGTTTTAATATCTCAACCAGAATCATATTTAACTTGCCAAGATACGTCTTCTCCGACTCCAAGAGCTCCGAACTAGACGATGTTTGGATTATCAAACCAACAATGTACTTCTTGATACCTTCACACTGTGGTCGAGCTAGGACTTTCCAACGTGTTTTGATTAATGCTTCAAGTATCTGAAGGGCGAAATATTTCGTTTCTTGGTTTGAACTGAATTCTAGAATCGAATCTACACGCATCCATGCATCTGGATGTTCCTTGAGTGTATTCAGGACTTTTTCTGCGATTTTCTGTTGATCGCCTGCTTCATGATACATACAGTTTACAACACGGTCTAGAAGTCCAATATCGAGGCGCTGAGAAAAATCTAAAAGTTGGGCGGCAGCAGACTCCGATATTACTGCCATCGGTGACGTTGGTGGCATGTATCGTGAAGTTGTAAGTCTGCTAGGAAAACCGGTTTGTGACCGGTCTCACGTGCGAAATACCAGACTCCTCAAGGCCA]
[-] EMBL CD153291 [TCTTTAAAATGTTTGGCTTNTGTNTGAGTCATNTGACNCAAAGAGAAGTCGANAACTTCTTCGCTTAAAAGACGCAAGATGACCATATTGTTNTGACATAAAGATTCGTTTGTCTTACTTGCCCCAACAATGTCACTAATGAATGTTGACCAGTTATTAGGCCATTCATGTTTTAATATCTCAACCAGAATCATATTTAACTTGCCAAGATACGTCTTCTCCGACTCCAAGAGCTCCGAACTAGACGATGTTTGGATTATCAAACCAACAATGTACTTCTTGATACCTTCACACTGTGGTCGAGCTAGGACTTTCCAACGTGTTTTGATTAATGCTTCAAGTATCTGAAGGGCGAAATATTTCGTTTCTTGGTTTGAACTGAATTCTAGAATCGAATCTACACGCATCCATGCATCTGGATGTTCCTTGAGTGTATTCAGGACTTTTTCTGCGATTTTCTGTTGATCGCCTGCTTCATGATACATACAGTTTACAACACGGTCTAGAAGTCCAATATCGAGGCGCTGAGAAAAATCTAAAAGTTGGGCGGCAGCAGACTCCGATATTACTG ]
[+] EMBL CD163012 [ TAACTTGCCAAGATACGTCTTCTCCGACTCCAAGAGCTCCGAACTAGACGATGTTTGGATTATCAAACCAACAATGTACTTCTTGATACCTTCACACTGTGGTCGAGCTAGGACTTTCCAACGTGTTTTGATTAATGCTTCAAGTATCTGAAGGGCGAAATATTTCGTTTCTTGGTTTGAACTGAATTCTAGAATCGAATCTACACGCATCCATGCATCTGGATGTTCCTTGAGTGTATTCAGGACTTTTTCTGCGATTTTCTGTTGATCGCCTGCTTCATGATACATACAGTTTACAACACGGTCTAGAAGTCCAATATCGAGGCGCTGAGAAAAATCTAAAAGTTGGGCGGCAGCAGACTCCGATATTACTGCCATCGGTGACGTTGGTGGCATGTATCGTGAAGTTGTAAGTCTGCTAGGAAAACCGGTTTGTGACCGGTCTCACGTGCGAAATACCAGACTCCTCAAGGCCA]
[-] EMBL CD069047 [ CAAGAGCTCCGAACTAGACGATGTTTGGATTATCAAACCAACAATGTACTTCTTGATACCTTCACACTGTGGTCGAGCTAGGACTTTCCAACGTGTTTTGATTAATGCTTCAAGTATCTGAAGGGCGAAATATTTCGTTTCTTGGCTTGAACTGAATTCTAGAATCGAATCTACACGCATCCATGCATCTGGATGTTCCTTGAGTGTATTCAGGACTTTTTCTGCGATTTTCTGTTGATCGCCTGCTTCATGATACATACAGTTTACAACACGGTCTAGAAGTCCAATATCGAGGCGCTGAGAAAAATCTAAAAGTTGGACGGCAGCAGACTCCGATATTACTGC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8896#0 TCACAAACTGTCTGACAACCTCGCCATGTTCATTTTCAACTACAAGTACTTCTTCAGGAC 60
consensus_8896#1 ------------------------------------------------------------
consensus_8896#0 GAGCCATGCGTGAGATCATGATTCTTCGAAGATTAGACAAAATTGGTGCACATTGTCTAC 120
consensus_8896#1 ------------------------------------------------------------
consensus_8896#0 TTCGACCTTCACCAGTGGTGGAATCAGCCAATGTTCCAACTACCGTAGTTGTAAGACTTT 180
consensus_8896#1 ------------------------------------------------------------
consensus_8896#0 CTCGATATAGATCAGAAACCAAAATATTCCAGTATTCTAAGCAAATCTTGAATATTTCCC 240
consensus_8896#1 ------------------------------------------------------------
consensus_8896#0 TTTCCTCGACTTCGGAGAGCATCAAGAGGTAAGCATAAGCATCTTGTAATTTCCAAATAA 300
consensus_8896#1 --------TCTTTAAAATGTTT-----GGCTTNTGTNTGAGTCATNTGACNCAAAGAGAA 47
*** * * * ** * * ** * * * * * **
consensus_8896#0 GCTCAGGTTTTTCGACGAGACTGATATGACCTTTGAGGAATGTTGTGTAAAAAAATGCCA 360
consensus_8896#1 G-TCGANAACTTCTTCG---CTTAAAAGACGCAAGATGACCATATTGTTNTGACATA--A 101
* ** *** ** ** * * *** ** ** * *** * ** *
consensus_8896#0 GGTTTTGGATGAAACTCTGTTCATCATTACTTCCGCGCTCATATGCTTCTTTTAGCCGTG 420
consensus_8896#1 AGATTCGTTTG---TCTTACTTGCCCCAACAATGTCACTAATGAA----TGTTGACCA-G 153
* ** * ** * * * ** * ** ** * ** ** *
consensus_8896#0 TTTCTAAAGGCAACATTTCTTTTAGTTTATCGGTAGTAGAAACAAACAATTCTACTAGCT 480
consensus_8896#1 TTATTA--GGCCATTCATGTTTTAATATCTCAAC--CAGAATCATA---TTTAACTTGCC 206
** ** *** * * ***** * * ** **** ** * ** *** **
consensus_8896#0 GGGTCTCGTATTCGTCAACTAATACACCCGCTATTTCAGCAAGGCATTTCAAAGTAACAT 540
consensus_8896#1 AAGATACGTCTTCTCCGACTCCAAGAGCTCCGAACTAGACGATG---TTTGGATTATCAA 263
* *** *** * *** * * * * * * * * * ** * ** **
consensus_8896#0 TTCGGAACAGAGGGACATTGAAGAATTTAAATACTAAGGTTTGTATTAGATTAGTTTCAA 600
consensus_8896#1 ACC--AACA-ATGTACTTCTTGATACCTTCACACTGTGGTC-GAGCTAGG--ACTTTCCA 317
* **** * * ** * * * * *** *** * *** * **** *
consensus_8896#0 ATATATATCC-TAAGGGAATCCAGTGCATAAAACGAAGTAACGTCTCCAGCGTCGACACA 659
consensus_8896#1 ACGTGTTTTGATTAATGCTTCAAGTATCTGAAG-GGCGAAATATTTCGTTTCTTGGT--- 373
* * * * * * * ** *** * ** * * ** * ** * *
consensus_8896#0 ACTAGAGATGCATTTTGGGAATTTTCCAAGACATATTGACAAAGCTGAAAAATCA--AAC 717
consensus_8896#1 --TTGAACTGAATTCTAGAATCGAATCTACACGCATCCATGCATCTGGATGTTCCTTGAG 431
* ** ** *** * * * * * ** ** * * *** * ** *
consensus_8896#0 TGAACTGTTGACACATA--GAGTCTTTTAAATGTCTGGCTTTTGTTTGAGTCATTTGACC 775
consensus_8896#1 TGTATTCAGGACTTTTTCTGCGATTTTCTGTTGATCGCCTGCTTCATGATACATACAGTT 491
** * * *** * * * *** ** * ** * *** ***
consensus_8896#0 CAAAGAGAAGTCGAAAACTTCTTCGCTTAAAAGACGCAAGATGACCATATTGTTTTGACA 835
consensus_8896#1 TACAACACGGTCTAGAAGTCCAATATCGAGGCGCTGAGAAAAATCTAAA--AGTTGGGCG 549
* * *** * ** * * * * * * * * * * ** * *
consensus_8896#0 TAAAGATTCGTTTGTCTTACTTGCCCCAACAATGTCACTAATGAATGTTGACCAGTTAAT 895
consensus_8896#1 GCAGCAGACTCCGATATTACTGCCATCGGTGACGTTGGTGGCATGTATCGTGAAGTTGTA 609
* * * * ***** * * * ** * * * * ****
consensus_8896#0 AGGCCATTCATGTTTTAATATCTCAACCAGAATCATATTTAACTTGCCAAGATACGTCTT 955
consensus_8896#1 AGTCTGCTAGGAAAACCGGTTTGTGACCGGTCTCACGTGCGAAATACCA-GACTCCTCAA 668
** * * * *** * *** * * * *** ** * **
consensus_8896#0 CTCCGACTCCAAGAGCTCCGAACTAGACGATGTTTGGATTATCAAACCAACAATGAGGAA 1015
consensus_8896#1 GGCCA------------------------------------------------------- 673
**
consensus_8896#0 GCCAG 1020
consensus_8896#1 -----
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||