cluster # 8905

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Schistosoma mansoni
cluster # 8905 cluster # 8905 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8905#0 length = 731 sequences # 6

consensus_8905#1 length = 281 sequences # 1

consensusID : consensus_8905#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 731
fasta sequence

                              [AGTAGTAGCAGTAGTATTATCACAACAATCTGACATCTCCATGCAAGTGATAGATGATGACGACGAATNTGATTCGGTTGGATAACAACTTACTAATGGTAATTTATTTTGTGGTTTGGTATTTGAATCTGATTCAGTGGAAGGAT-AAGCCA-GTTATACAAA-CATAAGGAA-TTGCTGG-CTATGCGCACAATGACAGC-TTTTTCTAGCACTGGTGTGGACAAGTTGTGTTGTCTAAATATAGTCGTAGCAAGACGATAAGTCGGGGCGAAATCAAGCTCTCCGATAGTATTTAACAATGAACCGGATTCTGTTAGACCGTCTAATATTTGCCCGTGGTTATCTCCTCCCAGTTGTCCAACCTTGTGACACTTATTCTTGAGAACATCAGCAGCCAGATTTTGTTGGATCGGTAGTGTTAAGTACAGTTCTACTAGTGCTTGATTTTCACGATGTCTTCTCTGCCTAGCTGCAATACGCGACTTCTCACGACGCTCATAAGTTTGCTTTCCCTTTGAATTATTCTCTGATTTGACTTGAAGATCACAGTTTTTAGAGATGATGGGATTATAATCTGAAGGTAGCGAAGGGTTGTATGATTGATTATCAACCTTGAGTTTTTCTTTTTCATGTGAAGATACATTTTTCTTCCTGGATTTATTGTAGTTTGTTGGGCAACCAGGTAAGCTTCGAGGAGCAGTAGTTGGTAAGCACATTGTACAATGTGGTACCGC]

[-] EMBL CD195956             [AGTAGTAGCAGTAGTATTATCACAACAATCTGACATCTCCATGCAAGTGATAGATGATGACGACGAATNTGATTCGGTTGGATAACAACTTACTAATGGTAATTTATTTTGTGGTTTGGTATTTGAATCTGATTCAGTGGAAGGATAAAGCCA GTTATACAAA CATAAGGAA TTGCTGG CTATGCGCACAATGACAGC TTTTTCTAGCACTGGTGTGGACAAGTTGTGTTGTCTAAATATAGTCGTAGCAAGACGATAAGTCGGGGCGAAATCAAGCTCTCCGATAGTATTTAACAATGAACCGGATTCTG                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CD179080             [                                                                                                                                                     GCCAGGTTATCCAAACCATAAGGAATTTGTTGG GTAGGCGCCCAATGACAGCTTTTTTTTAGCAATGGTGGGGACAAGTTGTGTGTTCTAAATATAGTCGTAGCAAGACGATAAGTCGGGGCGAAATCAAGCTCTCCGATAGTATTTAACAATGACCCGGACTCTGTTAGACCGTCTAATATTTGCCCGTGG TATCTCCTCCCAGTTGTCCAACCTTGTGACACTTATTCTTGAGAACATCAGCAGCCAGATTTTGTTGGATCGGTAGTGTTAAGTACAGTTCTACTAGTGCTTGATTTTCACGATGTCTTCTCTGCCTAGCTGCAATACGCGACTTCTCACGACGCTCATAAGTTTGCTTTCCCTTTGAATTATTCTCTGATTTGACTTGAAGATCACAGTTTTTAGAGATGATGGGATTATAATCTGAAGGTAGCGAAGGGTTGTATGATTGATTATCAACCTTGAGTTTTTCTTTTTCATGTGAAGATACATTTTTCTTCCTGGATTTATTGTAGTTTGTTGGGCAACCAGGTAAGCTTCGAGGAGCAGTAGTTGGTAAGCACATTGTACAATGT        ]
[+] EMBL CD178620             [                                                                                                                                                          GTTATACAAA CATAAGGAA TTGCTGG CTATGCGCACAATGACAGC TTTTTCTAGCACTGGTGTGGACAAGTTGTGTTGTCTAAATATAGTCGTAGCAAGACGATAAGTCGGGGCGAAATCAAGCTCTCCGATAGTATTTAACAATGAACCGGATTCTGTTAGACCGTCTAATATTTGCCCGTGGTTATCTCCTCCCAGTTGTCCAACCTTGTGACACTTATTCTTGAGAACATCAGCAGCCAGATTTTGTTAGATCGGTAGTGTTAAGTACAGTTCTACTAGTGCTTGATTTTCACGATGTCTTCTCTGCCTAGCTGCAATACGCGACTTCTCACGACGCTCATAAGTTTGCTTTCCCTTTGAATTATTCTCTGATTTGACTTGAAGATCACAGTTTTTAGAGATGATGGGATTATAATCTGAAGGTAGCGAAGGGTTGTATGATTGATTATCAACCTTGAGTTTTTCTTTTTCATGTGAAGATACATTTTTCTTCCTGGATTTATTGGAGTTTGTTGGGC ACCAGGTAAGCTTCGAGGAGCAGTAGTTGGTAAGCACATTGTACAATGTGGTACCGC]
[+] EMBL CD178614             [                                                                                                                                                          GTTATACAAA CATAAGGAA TTGCTGG CTATGCGCACAATGACAGC TTTTTCTAGCACTGGTGTGGACAAGTTGTGTTGTCTAAATATAGTCGTAGCAAGACGATAAGTCGGGGCGAAATCAAGCTCTCCGATAGTATTTAACAATGAACCGGATTCTGTTAGACCGTCTAATATTTGCCCGTGGTTATCTCCTCCCAGTTGTCCAACCTTGTGACACTTATTCTTGAGAACATCAGCAGCCAGATTTTGTTGGATCGGTAGTGTTAAGTACAGTTCTACTAGTGCTTGATTTTCACGATGTCTTCTCCGCCTAGCTGCAATACGCGACTTCTCACGACGCTCATAAGTTTGCTTTCCCTTTGAATTATTCTCTGATTTGACTTGAAGATCACAGTTTTTAGAGATGATGGGATTATAATCTGAAGGTAGCGAAGGGTTGTATGATTGATTATCAACCTTGAGTTTTTCTTTTTCATGTGAAGATACA                                                                                            ]
[-] EMBL CD178687             [                                                                                                                                                           TTATACAAA CATAAGGAA  TGCTGGNCTATGCGCACAATGACAGC TTTTTCTAGCACTGGTGTGGACAAGTTGTGTTGTCTAAATATAGTCGTAGCAAGACGATAAGTCGGGGCGAAATCAAGCTCTCCGATAGTATTTAACAATGAACCGGATTCTGTTAGACCGTCTAATATTTGCCCGTGGTTATCTCCTCCCAGTTGTCCAACCTTGTGACACTTATTCTTGAGAACATCAGCAGCCAGATTTTGTTGGATCGGTAGTGTTAAGTACAGTTCTACTAGTGCTTGATTTTCACGATGTCTTCTCTGCCTAGCTGCAATACGCGACTTCTCACGACGCTCATAAGTTTGCTTTCCCTTTGAATTATTCTCTGATTTGACTTGAAGATCACAGTTTTTAGAGATGATGGGATTATAATCTGAAGGTAGCGAAGGGTTGTATGATTGATTATCAACCTTGAGTTTTTCTTTTTCATGTGAAGATACTTT                                                                                          ]
[-] EMBL CD178919             [                                                                                                                                                           TTATACAAA CATAAGGAA TTGCTGG CTATGCGCACAATGACAGC TTTTTCTAGCACTGGTGTGGACGAGTTGTGTTGTCTAAATATAGTCGTAGCAAGACGATAAGTCGGGGCGAAATCAAGCTCTCCGATAGTATTTAACAATGAACCGGATTCTGTTAGACCGTCTAATATTTGCCCGTGGTTATCTCCTCCCAGTTGTCCAACCTTGTGACACTTATTCTTGAGAACATCAGCAGCCAGATTTTGTTGGATCGGTAGTGTTAAGTACAGTTCTACTAGTGCTTGATTTTCACGATGTCTTCTCTGCCTAGCTGCAATACGCGACTTCTCACGACGCTCATAAGTTTGCTTTCCCTTTGAATTATTCTCTGATTTGACTTGAAGATCACAGTTTTTAGAGATGATGGGATTATAATCTGAAGGTAGCGAAGGGTTGTATGATTGATTATCAACCTTGAGTTTTTCTTTTTC                                                                                                         ]




>consensus_8905#0
AGTAGTAGCAGTAGTATTATCACAACAATCTGACATCTCCATGCAAGTGATAGATGATGA
CGACGAATNTGATTCGGTTGGATAACAACTTACTAATGGTAATTTATTTTGTGGTTTGGT
ATTTGAATCTGATTCAGTGGAAGGATAAGCCAGTTATACAAACATAAGGAATTGCTGGCT
ATGCGCACAATGACAGCTTTTTCTAGCACTGGTGTGGACAAGTTGTGTTGTCTAAATATA
GTCGTAGCAAGACGATAAGTCGGGGCGAAATCAAGCTCTCCGATAGTATTTAACAATGAA
CCGGATTCTGTTAGACCGTCTAATATTTGCCCGTGGTTATCTCCTCCCAGTTGTCCAACC
TTGTGACACTTATTCTTGAGAACATCAGCAGCCAGATTTTGTTGGATCGGTAGTGTTAAG
TACAGTTCTACTAGTGCTTGATTTTCACGATGTCTTCTCTGCCTAGCTGCAATACGCGAC
TTCTCACGACGCTCATAAGTTTGCTTTCCCTTTGAATTATTCTCTGATTTGACTTGAAGA
TCACAGTTTTTAGAGATGATGGGATTATAATCTGAAGGTAGCGAAGGGTTGTATGATTGA
TTATCAACCTTGAGTTTTTCTTTTTCATGTGAAGATACATTTTTCTTCCTGGATTTATTG
TAGTTTGTTGGGCAACCAGGTAAGCTTCGAGGAGCAGTAGTTGGTAAGCACATTGTACAA
TGTGGTACCGC

consensusID : consensus_8905#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 281
fasta sequence

                              [CAACTTTCGCGGTACCACATTGTACAATGTGCTTACCAACTACTGCTCCTCGAAGCTTACCTGGTTGCCCAACGTATGTCAAGTCTTACCATTTGTTCAATTTATATAAATAGTTCGAGCTCCTGACTGCCGTAGAAATAGAGGATACTTCACCCATTATTTAATAAAAGTATAGTCCTATTTCATATTTATTCATGTTACTTTATCTGACATATTGTTAAGGAAATCTAACAATATAAAGATATGGTTTGAATCATTTATCTCGCAAATAGTTCGATTAC]

[+] EMBL CD090260             [CAACTTTCGCGGTACCACATTGTACAATGTGCTTACCAACTACTGCTCCTCGAAGCTTACCTGGTTGCCCAACGTATGTCAAGTCTTACCATTTGTTCAATTTATATAAATAGTTCGAGCTCCTGACTGCCGTAGAAATAGAGGATACTTCACCCATTATTTAATAAAAGTATAGTCCTATTTCATATTTATTCATGTTACTTTATCTGACATATTGTTAAGGAAATCTAACAATATAAAGATATGGTTTGAATCATTTATCTCGCAAATAGTTCGATTAC]




>consensus_8905#1
CAACTTTCGCGGTACCACATTGTACAATGTGCTTACCAACTACTGCTCCTCGAAGCTTAC
CTGGTTGCCCAACGTATGTCAAGTCTTACCATTTGTTCAATTTATATAAATAGTTCGAGC
TCCTGACTGCCGTAGAAATAGAGGATACTTCACCCATTATTTAATAAAAGTATAGTCCTA
TTTCATATTTATTCATGTTACTTTATCTGACATATTGTTAAGGAAATCTAACAATATAAA
GATATGGTTTGAATCATTTATCTCGCAAATAGTTCGATTAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8905#0      AGTAGTAGCAGTAGTATTATCACAACAATCTGACATCTCCATGCAAGTGATAGATGATGA 60
consensus_8905#1      ------------------------------------------------------------
                                                                                  

consensus_8905#0      CGACGAATNTGATTCGGTTGGATAACAACTTACTAATGGTAATTTATTTTGTGGTTTGGT 120
consensus_8905#1      ------------------------------------------------------------
                                                                                  

consensus_8905#0      ATTTGAATCTGATTCAGTGGAAGGATAAGCCAGTTATACAAACATAAGGAATTGCTGGCT 180
consensus_8905#1      ------------------------------------------------------------
                                                                                  

consensus_8905#0      ATGCGCACAATGACAGCTTTTTCTAGCACTGGTGTGGACAAGTTGTGTTGTCTAAATATA 240
consensus_8905#1      ------------------------------------------------------------
                                                                                  

consensus_8905#0      GTCGTAGCAAGACGATAAGTCGGGGCGAAATCAAGCTCTCCGATAGTATTTAACAATGAA 300
consensus_8905#1      ------------------------------------------------------------
                                                                                  

consensus_8905#0      CCGGATTCTGTTAGACCGTCTAATATTTGCCCGTGGTTATCTCCTCCCAGTTGTCCAACC 360
consensus_8905#1      ------------------------------------------------------------
                                                                                  

consensus_8905#0      TTGTGACACTTATTCTTGAGAACATCAGCAGCCAGATTTTGTTGGATCGGTAGTGTTAAG 420
consensus_8905#1      ------------------------------------------------------------
                                                                                  

consensus_8905#0      TACAGTTCTACTAGTGCTTGATTTTCACGATGTCTTCTCTGCCTAGCTGCAATACGCGAC 480
consensus_8905#1      --CAACTTTCGCGGTACCACATTGT-ACAATGTGCTTACCAACTA-CTGCTCCTCGAAGC 56
                        **  * *    ** *   *** * ** ****  *  *   *** ****    **   *

consensus_8905#0      TTCTCACGACGCTCATAAGTTTGCTTTCCCTTTGAATTATTCTCTGATTTGACTTGAAGA 540
consensus_8905#1      TTACCTGGTTGCCCA-ACGTATGTCAAGTCTT---ACCATTTGTTCAATTTATATAA--- 109
                      **  *  *  ** ** * ** **      ***   *  ***   * * ** *  * *   

consensus_8905#0      TCACAGTTTTTAGAGATGATGGGATTATAATCTGAAGGTAGCGAAGGGTTGTATGATTGA 600
consensus_8905#1      --ATAGTTC---GAGCTCCTGAC----TGCCGTAGAAATAGAGGATACTTCACCCATTAT 160
                        * ****    *** *  **      *    *  *  *** * *   **     ***  

consensus_8905#0      TTATCAACCTTGAGTTTTTCTTTTTCATGTGAAGATACATTTTTCTTCCTGGATTTATTG 660
consensus_8905#1      TTAATAAA--AGTATAGTCCTATTTCATATTTATTCATGTTACTTTATCTG-ACATATTG 217
                      ***  **    *  *  * ** ****** *  *   *  **  * *  *** *  *****

consensus_8905#0      T--AGTTTGTTGGGCAACCAGGTAAGCTTCGAGGAGCAGTAGTTGGTAAGCACATTGTAC 718
consensus_8905#1      TTAAGGAAATCTAACAATATA--AAGATATGGTTTGAATCATTTATCTCGCAAATAGTTC 275
                      *  **    *    ***      *** *  *    * *  * **     *** ** ** *

consensus_8905#0      AATGTGGTACCGC 731
consensus_8905#1      GAT----TAC--- 281
                       **    ***