These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8905#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 731 fasta sequence [AGTAGTAGCAGTAGTATTATCACAACAATCTGACATCTCCATGCAAGTGATAGATGATGACGACGAATNTGATTCGGTTGGATAACAACTTACTAATGGTAATTTATTTTGTGGTTTGGTATTTGAATCTGATTCAGTGGAAGGAT-AAGCCA-GTTATACAAA-CATAAGGAA-TTGCTGG-CTATGCGCACAATGACAGC-TTTTTCTAGCACTGGTGTGGACAAGTTGTGTTGTCTAAATATAGTCGTAGCAAGACGATAAGTCGGGGCGAAATCAAGCTCTCCGATAGTATTTAACAATGAACCGGATTCTGTTAGACCGTCTAATATTTGCCCGTGGTTATCTCCTCCCAGTTGTCCAACCTTGTGACACTTATTCTTGAGAACATCAGCAGCCAGATTTTGTTGGATCGGTAGTGTTAAGTACAGTTCTACTAGTGCTTGATTTTCACGATGTCTTCTCTGCCTAGCTGCAATACGCGACTTCTCACGACGCTCATAAGTTTGCTTTCCCTTTGAATTATTCTCTGATTTGACTTGAAGATCACAGTTTTTAGAGATGATGGGATTATAATCTGAAGGTAGCGAAGGGTTGTATGATTGATTATCAACCTTGAGTTTTTCTTTTTCATGTGAAGATACATTTTTCTTCCTGGATTTATTGTAGTTTGTTGGGCAACCAGGTAAGCTTCGAGGAGCAGTAGTTGGTAAGCACATTGTACAATGTGGTACCGC] [-] EMBL CD195956 [AGTAGTAGCAGTAGTATTATCACAACAATCTGACATCTCCATGCAAGTGATAGATGATGACGACGAATNTGATTCGGTTGGATAACAACTTACTAATGGTAATTTATTTTGTGGTTTGGTATTTGAATCTGATTCAGTGGAAGGATAAAGCCA GTTATACAAA CATAAGGAA TTGCTGG CTATGCGCACAATGACAGC TTTTTCTAGCACTGGTGTGGACAAGTTGTGTTGTCTAAATATAGTCGTAGCAAGACGATAAGTCGGGGCGAAATCAAGCTCTCCGATAGTATTTAACAATGAACCGGATTCTG ] [-] EMBL CD179080 [ GCCAGGTTATCCAAACCATAAGGAATTTGTTGG GTAGGCGCCCAATGACAGCTTTTTTTTAGCAATGGTGGGGACAAGTTGTGTGTTCTAAATATAGTCGTAGCAAGACGATAAGTCGGGGCGAAATCAAGCTCTCCGATAGTATTTAACAATGACCCGGACTCTGTTAGACCGTCTAATATTTGCCCGTGG TATCTCCTCCCAGTTGTCCAACCTTGTGACACTTATTCTTGAGAACATCAGCAGCCAGATTTTGTTGGATCGGTAGTGTTAAGTACAGTTCTACTAGTGCTTGATTTTCACGATGTCTTCTCTGCCTAGCTGCAATACGCGACTTCTCACGACGCTCATAAGTTTGCTTTCCCTTTGAATTATTCTCTGATTTGACTTGAAGATCACAGTTTTTAGAGATGATGGGATTATAATCTGAAGGTAGCGAAGGGTTGTATGATTGATTATCAACCTTGAGTTTTTCTTTTTCATGTGAAGATACATTTTTCTTCCTGGATTTATTGTAGTTTGTTGGGCAACCAGGTAAGCTTCGAGGAGCAGTAGTTGGTAAGCACATTGTACAATGT ] [+] EMBL CD178620 [ GTTATACAAA CATAAGGAA TTGCTGG CTATGCGCACAATGACAGC TTTTTCTAGCACTGGTGTGGACAAGTTGTGTTGTCTAAATATAGTCGTAGCAAGACGATAAGTCGGGGCGAAATCAAGCTCTCCGATAGTATTTAACAATGAACCGGATTCTGTTAGACCGTCTAATATTTGCCCGTGGTTATCTCCTCCCAGTTGTCCAACCTTGTGACACTTATTCTTGAGAACATCAGCAGCCAGATTTTGTTAGATCGGTAGTGTTAAGTACAGTTCTACTAGTGCTTGATTTTCACGATGTCTTCTCTGCCTAGCTGCAATACGCGACTTCTCACGACGCTCATAAGTTTGCTTTCCCTTTGAATTATTCTCTGATTTGACTTGAAGATCACAGTTTTTAGAGATGATGGGATTATAATCTGAAGGTAGCGAAGGGTTGTATGATTGATTATCAACCTTGAGTTTTTCTTTTTCATGTGAAGATACATTTTTCTTCCTGGATTTATTGGAGTTTGTTGGGC ACCAGGTAAGCTTCGAGGAGCAGTAGTTGGTAAGCACATTGTACAATGTGGTACCGC] [+] EMBL CD178614 [ GTTATACAAA CATAAGGAA TTGCTGG CTATGCGCACAATGACAGC TTTTTCTAGCACTGGTGTGGACAAGTTGTGTTGTCTAAATATAGTCGTAGCAAGACGATAAGTCGGGGCGAAATCAAGCTCTCCGATAGTATTTAACAATGAACCGGATTCTGTTAGACCGTCTAATATTTGCCCGTGGTTATCTCCTCCCAGTTGTCCAACCTTGTGACACTTATTCTTGAGAACATCAGCAGCCAGATTTTGTTGGATCGGTAGTGTTAAGTACAGTTCTACTAGTGCTTGATTTTCACGATGTCTTCTCCGCCTAGCTGCAATACGCGACTTCTCACGACGCTCATAAGTTTGCTTTCCCTTTGAATTATTCTCTGATTTGACTTGAAGATCACAGTTTTTAGAGATGATGGGATTATAATCTGAAGGTAGCGAAGGGTTGTATGATTGATTATCAACCTTGAGTTTTTCTTTTTCATGTGAAGATACA ] [-] EMBL CD178687 [ TTATACAAA CATAAGGAA TGCTGGNCTATGCGCACAATGACAGC TTTTTCTAGCACTGGTGTGGACAAGTTGTGTTGTCTAAATATAGTCGTAGCAAGACGATAAGTCGGGGCGAAATCAAGCTCTCCGATAGTATTTAACAATGAACCGGATTCTGTTAGACCGTCTAATATTTGCCCGTGGTTATCTCCTCCCAGTTGTCCAACCTTGTGACACTTATTCTTGAGAACATCAGCAGCCAGATTTTGTTGGATCGGTAGTGTTAAGTACAGTTCTACTAGTGCTTGATTTTCACGATGTCTTCTCTGCCTAGCTGCAATACGCGACTTCTCACGACGCTCATAAGTTTGCTTTCCCTTTGAATTATTCTCTGATTTGACTTGAAGATCACAGTTTTTAGAGATGATGGGATTATAATCTGAAGGTAGCGAAGGGTTGTATGATTGATTATCAACCTTGAGTTTTTCTTTTTCATGTGAAGATACTTT ] [-] EMBL CD178919 [ TTATACAAA CATAAGGAA TTGCTGG CTATGCGCACAATGACAGC TTTTTCTAGCACTGGTGTGGACGAGTTGTGTTGTCTAAATATAGTCGTAGCAAGACGATAAGTCGGGGCGAAATCAAGCTCTCCGATAGTATTTAACAATGAACCGGATTCTGTTAGACCGTCTAATATTTGCCCGTGGTTATCTCCTCCCAGTTGTCCAACCTTGTGACACTTATTCTTGAGAACATCAGCAGCCAGATTTTGTTGGATCGGTAGTGTTAAGTACAGTTCTACTAGTGCTTGATTTTCACGATGTCTTCTCTGCCTAGCTGCAATACGCGACTTCTCACGACGCTCATAAGTTTGCTTTCCCTTTGAATTATTCTCTGATTTGACTTGAAGATCACAGTTTTTAGAGATGATGGGATTATAATCTGAAGGTAGCGAAGGGTTGTATGATTGATTATCAACCTTGAGTTTTTCTTTTTC ] consensusID : consensus_8905#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 281 fasta sequence [CAACTTTCGCGGTACCACATTGTACAATGTGCTTACCAACTACTGCTCCTCGAAGCTTACCTGGTTGCCCAACGTATGTCAAGTCTTACCATTTGTTCAATTTATATAAATAGTTCGAGCTCCTGACTGCCGTAGAAATAGAGGATACTTCACCCATTATTTAATAAAAGTATAGTCCTATTTCATATTTATTCATGTTACTTTATCTGACATATTGTTAAGGAAATCTAACAATATAAAGATATGGTTTGAATCATTTATCTCGCAAATAGTTCGATTAC] [+] EMBL CD090260 [CAACTTTCGCGGTACCACATTGTACAATGTGCTTACCAACTACTGCTCCTCGAAGCTTACCTGGTTGCCCAACGTATGTCAAGTCTTACCATTTGTTCAATTTATATAAATAGTTCGAGCTCCTGACTGCCGTAGAAATAGAGGATACTTCACCCATTATTTAATAAAAGTATAGTCCTATTTCATATTTATTCATGTTACTTTATCTGACATATTGTTAAGGAAATCTAACAATATAAAGATATGGTTTGAATCATTTATCTCGCAAATAGTTCGATTAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8905#0 AGTAGTAGCAGTAGTATTATCACAACAATCTGACATCTCCATGCAAGTGATAGATGATGA 60 consensus_8905#1 ------------------------------------------------------------ consensus_8905#0 CGACGAATNTGATTCGGTTGGATAACAACTTACTAATGGTAATTTATTTTGTGGTTTGGT 120 consensus_8905#1 ------------------------------------------------------------ consensus_8905#0 ATTTGAATCTGATTCAGTGGAAGGATAAGCCAGTTATACAAACATAAGGAATTGCTGGCT 180 consensus_8905#1 ------------------------------------------------------------ consensus_8905#0 ATGCGCACAATGACAGCTTTTTCTAGCACTGGTGTGGACAAGTTGTGTTGTCTAAATATA 240 consensus_8905#1 ------------------------------------------------------------ consensus_8905#0 GTCGTAGCAAGACGATAAGTCGGGGCGAAATCAAGCTCTCCGATAGTATTTAACAATGAA 300 consensus_8905#1 ------------------------------------------------------------ consensus_8905#0 CCGGATTCTGTTAGACCGTCTAATATTTGCCCGTGGTTATCTCCTCCCAGTTGTCCAACC 360 consensus_8905#1 ------------------------------------------------------------ consensus_8905#0 TTGTGACACTTATTCTTGAGAACATCAGCAGCCAGATTTTGTTGGATCGGTAGTGTTAAG 420 consensus_8905#1 ------------------------------------------------------------ consensus_8905#0 TACAGTTCTACTAGTGCTTGATTTTCACGATGTCTTCTCTGCCTAGCTGCAATACGCGAC 480 consensus_8905#1 --CAACTTTCGCGGTACCACATTGT-ACAATGTGCTTACCAACTA-CTGCTCCTCGAAGC 56 ** * * ** * *** * ** **** * * *** **** ** * consensus_8905#0 TTCTCACGACGCTCATAAGTTTGCTTTCCCTTTGAATTATTCTCTGATTTGACTTGAAGA 540 consensus_8905#1 TTACCTGGTTGCCCA-ACGTATGTCAAGTCTT---ACCATTTGTTCAATTTATATAA--- 109 ** * * ** ** * ** ** *** * *** * * ** * * * consensus_8905#0 TCACAGTTTTTAGAGATGATGGGATTATAATCTGAAGGTAGCGAAGGGTTGTATGATTGA 600 consensus_8905#1 --ATAGTTC---GAGCTCCTGAC----TGCCGTAGAAATAGAGGATACTTCACCCATTAT 160 * **** *** * ** * * * *** * * ** *** consensus_8905#0 TTATCAACCTTGAGTTTTTCTTTTTCATGTGAAGATACATTTTTCTTCCTGGATTTATTG 660 consensus_8905#1 TTAATAAA--AGTATAGTCCTATTTCATATTTATTCATGTTACTTTATCTG-ACATATTG 217 *** ** * * * ** ****** * * * ** * * *** * ***** consensus_8905#0 T--AGTTTGTTGGGCAACCAGGTAAGCTTCGAGGAGCAGTAGTTGGTAAGCACATTGTAC 718 consensus_8905#1 TTAAGGAAATCTAACAATATA--AAGATATGGTTTGAATCATTTATCTCGCAAATAGTTC 275 * ** * *** *** * * * * * ** *** ** ** * consensus_8905#0 AATGTGGTACCGC 731 consensus_8905#1 GAT----TAC--- 281 ** *** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||