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Schistosoma mansoni
cluster # 8910 cluster # 8910       Sequences # 7       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8910#0 length = 731 sequences # 3  
consensus_8910#1 length = 612 sequences # 3  
consensus_8910#2 length = 534 sequences # 1  

consensusID : consensus_8910#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 731
fasta sequence
                              [AATATTATTATTGGTAGTAGTAGTAGTAACAATACTATCATCAGCTAAATCGAGTGGTGAATACACAATAAAACAAGTTAAATAACTTGGATGAAAAGAAAAATA-CTTGTCATTAGTAAAAACAATGATGAAGATTATAAGGATATTGAGAATATTATCACCTAGGTATGAATGAGAAAAAAAACAGCGGGACAAATGATAAACGACAAACTAGATAACAAAACAACAAGTACTAAATGCTTAGTT-AAAAATAGTGAGATAAAAATAAGCCATAATTATGGAGACGAAATCGAAGTAAAGAAATACAGATCACTAAATAATAAAAATGGATATTTCGTCATGTTAACGCCGACCACTGTGTGTTGGTAGAATTACTGGAGGTGGCGAAAATGTTTTTAAAATTGATTCACATTGCATGTTAAGCGTATAACTCAATGATTGATTAGGATTGCATGGAGTACAGTTGGTACAACTAGTACTAGTTGTAACATTGGGGATAATCCTACTGTTTGAAGTGGTCACATTAGCTGCTACATTCTGATTTAAGCAAACTGTACTTTCTTGTGATAAGCATGTTTGTGATTTGTTCTTTGATTCAGATCGTTTCAATGATGCTTTTGAACTAAATATAGAAAGAGGTAGGCTTTGTCGAGATAACTCAAATATGGAAGCATCTGTATATGTGAGTTTTGTTCTTGTTTTGCCTCGTGCCGATCATGGCCTCGAGGCCA]

[+] EMBL CD076170             [AATATTATTATTGGTAGTAGTAGTAGTAACAATACTATCATCAGCTAAATCGAGTGGTGAATACACAATAAAACAAGTTAAATAACTTGGATGAAAAGAAAAATA CTTGTCATTAGTAAAAACAATGATGAAGATTATAAGGATATTGAGAATATTATCACCTAGGTATGAATGAGAAAAAAAACAGCGGGACAAATGATAAACGACAAACTAGATAACAAAACAACAAGTACTAAATGCTTAGTT AAAAATAGTGAGATAAAAATAAGCCATAATTATGGAGACGAAATCGAAGTAAAGAAATACAGATCACTAAATAATAAAAATGGATATTTCGTCATGTTAACGCCGACCACTGTGTGTTGGTAGAATTACTGGAGGTGGCGAAAATGTTTTTAAAATTGATTCACATTGCATGTTAAGCGTATAACTCAATGATTGATTAGGATTGCATGGAGTACAGTTGGTACAACTAGTACTAGTTGTAACATTGGGGATAATCCTACTGTTTGAAGTGGTCACATTAGCTGCTACATTCTGATTTAAGCAAACTGTACTTTCTTGTGATAAGCATGTTTGTGATTTGTTCTTTGATTCAGATCGTTTCAATGATGCTTTTGA                                                                                                              ]
[+] EMBL AA999571             [AATATTATTATTGGTAGTAGTAGTAGTAACAATACTATCATCAGCTAAATCGAGTGGTGAATACACAATAAAACAAGTTAAATAACTTGGATGAAAAGAAAAATATCTTGTCATTAGTAAAAACAATGATGAAGATTATAAGGATATTGAGAATATTATCACCTAGGTATGAATGAGAAAAAAAACAGCGGGACAAATGATAAACGACAAACTAGATAACAAAACCACAAGTACTAAATGCTTAGTTAAAAAATAGTGAGATAAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CD083883             [                                                                                                                                                                                                                                                                          ATAAGCCATAATTATGGAGACGAAATCGAAGTAAAGAAATACAGATCACTAAATAATAAAAATGGATATTTCGTCATGTTAACGCCGACCACTGTGTGTTGGTAGAATTACTGGAGGTGGCGAAAATGTTTTTAAAATTGATTCACATTGCATGTTAAGCGTATAACTCAATGATTGATTAGGATTGCATGGAGTACAGTTGGTACAACTAGTACTAGTTGTAACATTGGGGATAATCCTACTGTTTGAAGTGGTCACATTAGCTGCTACATTCTGATTTAAGCAAACTGTACTTTCTTGTGATAAGCATGTTTGTGATTTGTTCTTTGATTCAGATCGTTTCAATGATGCTTTTGAACTAAATATAGAAAGAGGTAGGCTTTGTCGAGATAACTCAAATATGGAAGCATCTGTATATGTGAGTTTTGTTCTTGTTTTGCCTCGTGCCGATCATGGCCTCGAGGCCA]


>consensus_8910#0 AATATTATTATTGGTAGTAGTAGTAGTAACAATACTATCATCAGCTAAATCGAGTGGTGA ATACACAATAAAACAAGTTAAATAACTTGGATGAAAAGAAAAATACTTGTCATTAGTAAA AACAATGATGAAGATTATAAGGATATTGAGAATATTATCACCTAGGTATGAATGAGAAAA AAAACAGCGGGACAAATGATAAACGACAAACTAGATAACAAAACAACAAGTACTAAATGC TTAGTTAAAAATAGTGAGATAAAAATAAGCCATAATTATGGAGACGAAATCGAAGTAAAG AAATACAGATCACTAAATAATAAAAATGGATATTTCGTCATGTTAACGCCGACCACTGTG TGTTGGTAGAATTACTGGAGGTGGCGAAAATGTTTTTAAAATTGATTCACATTGCATGTT AAGCGTATAACTCAATGATTGATTAGGATTGCATGGAGTACAGTTGGTACAACTAGTACT AGTTGTAACATTGGGGATAATCCTACTGTTTGAAGTGGTCACATTAGCTGCTACATTCTG ATTTAAGCAAACTGTACTTTCTTGTGATAAGCATGTTTGTGATTTGTTCTTTGATTCAGA TCGTTTCAATGATGCTTTTGAACTAAATATAGAAAGAGGTAGGCTTTGTCGAGATAACTC AAATATGGAAGCATCTGTATATGTGAGTTTTGTTCTTGTTTTGCCTCGTGCCGATCATGG CCTCGAGGCCA



consensusID : consensus_8910#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 612
fasta sequence
                              [AAACTGTACTTTCTGTGNATAAGCATGTTTGTGATTTGTTCTTTGATTCAGATCGTTTCAATGATGCTTNTGAACTAAACATAGAAAGAGGTAGGCTTTGTCGAGATAACTCAAATATGGAAGCATCTGTTATATGTGAGTTTTGTTCTTGTTTTGAATACATACCCAATGATGTGGATAGAAATGATGTAGACGGCTTTTTAGGATATCGGAAATGTTGTAATAATGTTCGGCTTTCAACTGGTGATAGAATACCTTGACTACCTATTTGACAATCATTTTTTACGGAGTCCAATGTTCGATAACTGGGATGCGCCCATGAACTAGCGCAATATGCTTCAATAACTTGTAGGATTTTCGTATCATCCACTGTCCGAAGTTCATTTTCATGGATTTTCCCAGCTGAACGTAATACATCTTCCGCAGTGATAGCACTTTTCTGACGATCACCACGTTTACGACGTAATTCCTTACTTGAATCGGTAACCTTAGGACTTTGAGCTCTCACGCGGTTGTGTTGATTCTTGTGCAAAATAGAAAAATCTACCAACAGACCAGGAATATTTTGATCAATAAGTAATCCCAAGTTATTTAATACATTAACTGAGCCGA]

[-] EMBL CD082572             [AAACTGTACTTTCTGTGNATAAGCATGTTTGTGATTTGTTCTTTGATTCAGATCGTTTCAATGATGCTTNTGAACTAAACATAGAAAGAGGTAGGCTTTGTCGAGATAACTCAAATATGGAAGCATCTGTTATATGTGAGTTTTGTTCTTGTTTTGAATACATACCCAATGATGTGGATAGAAATGATGTAGACGGCTTTTTAGGATATCGGAAATGTTGTAATAATGTTCGGCTTTCAACTGGTGATAGAATACCTTGACTACCTATTTGACAATCATTTTTTACGGAGTCCAATGTTCGATAACTGGGATGCGCCCATGAACTAGCGCAATATGCTTCAATAACTTGTAGGATTTTCGTATCATCCACTGTCCGAAGTTCATTTTCATGGATTTTCCCAGCTGAACGTAATACATCTTCCGCAGTGATAGCACTTTTCTGACGATCACCACGTTTACGACGTAATTCCTTACTTGAATCGGTAACCTTAGGACTTTGAGCTCTCACGCGGTTGTGTTGATTCTTGTGCAAAATAGAAAAATCTACCAACAGACCAGGAATATTTTGATCAATAAGTAATCCCAAGTTATTTAATACATTAACTGAGCCGA]
[-] EMBL CD083750             [                                                                          CTAAACATAGAAAGAGGTAGGCTTTGTCGAGATAACTCAAATATGGAAGCATCTGTTATATGTGAGTTTTGTTCTTGTTTTGAATACATACCCAATGATGTGGATAGAAATGATGTAGACGGCTTTTTAGGATATCGGAAATGTTGTAATAATGTTCGGCTTTCAACTGGTGATAGAATACCTTGACTACCTATTTGACAATCATTTTTTACGGAGTCCAATGTTCGATAACTGGGATGCGCCCATGAACTAGCGCAATATGCTTCAATAACTTGTAGGATTTTCGTATCATCCACTGTCCGAAGTTCATTTTCATGGATTTTCCCAGCTGAACGTAATACATCTTCCGCAGTGATAGCACTTTTCTGACGATCACCACGTTTACGACGTAATTCCTTACTTGAATCGGTAACCTTAG                                                                                                                        ]
[+] EMBL CD144689             [                                                                                                                                                                                                                                                                                          ccACGGAGTCCAATGTTCGATAACTGGGATGCGCCCATGAACTAACGCAATATGCTTCAATAACTTGTAGGATTTTCGTATCATCCACTGTCCGAAGTTCATTTTCATGGATTTTCCCAGCTGAACGTAATACATCTTCCGCAGAGATAGCACTTTTCTGACGATCACCACGTTTACGACGTAATTCCTTACTTGctccgtgg                                                                                                                               ]


>consensus_8910#1 AAACTGTACTTTCTGTGNATAAGCATGTTTGTGATTTGTTCTTTGATTCAGATCGTTTCA ATGATGCTTNTGAACTAAACATAGAAAGAGGTAGGCTTTGTCGAGATAACTCAAATATGG AAGCATCTGTTATATGTGAGTTTTGTTCTTGTTTTGAATACATACCCAATGATGTGGATA GAAATGATGTAGACGGCTTTTTAGGATATCGGAAATGTTGTAATAATGTTCGGCTTTCAA CTGGTGATAGAATACCTTGACTACCTATTTGACAATCATTTTTTACGGAGTCCAATGTTC GATAACTGGGATGCGCCCATGAACTAGCGCAATATGCTTCAATAACTTGTAGGATTTTCG TATCATCCACTGTCCGAAGTTCATTTTCATGGATTTTCCCAGCTGAACGTAATACATCTT CCGCAGTGATAGCACTTTTCTGACGATCACCACGTTTACGACGTAATTCCTTACTTGAAT CGGTAACCTTAGGACTTTGAGCTCTCACGCGGTTGTGTTGATTCTTGTGCAAAATAGAAA AATCTACCAACAGACCAGGAATATTTTGATCAATAAGTAATCCCAAGTTATTTAATACAT TAACTGAGCCGA



consensusID : consensus_8910#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 534
fasta sequence
                              [CACGAGGTTTCCTTACAAACTTTCCTTGTAGTTATAAACATCCAATTTTATATGTCTAAAAATTTTGAAATGTAAATGGAGAATATTTTGCTAGTTTCTCGCAAATAACTCTTATCGATCATCTGATTTGTTTATAAATAATAATTTAGATCTCTCAAAATATTACTTAGTTCTGGGGTTAACATTTTAAATACCTCGTCTAATCTTTCTAGTTCTCTTCAATAATCCACTGTAATTTAAGCTATACTAATCTTGGCACTTTCTGATCCGTCTTTTTTCTATGCTTAAAATTAGTGGACTCCGTAAAAAATGATTGTCAAATAGGTAGTCAAGGTATTCTATCACCAGTTGAAAGCCGAACATTATTACAACATTTCCGATATCCTAAAAAGCCGTCTACATCATTTCTATCCACATCATTGGGTATGTATTCAAAACAAGAACAAAACTCACATATTACAGATGCTTCCATATTTGAGTTATCTCGACAAAGGCTAACTCTTTCTATGTTTAGTTCAAAAGCATCATTGAAAC]

[+] EMBL CD083806             [CACGAGGTTTCCTTACAAACTTTCCTTGTAGTTATAAACATCCAATTTTATATGTCTAAAAATTTTGAAATGTAAATGGAGAATATTTTGCTAGTTTCTCGCAAATAACTCTTATCGATCATCTGATTTGTTTATAAATAATAATTTAGATCTCTCAAAATATTACTTAGTTCTGGGGTTAACATTTTAAATACCTCGTCTAATCTTTCTAGTTCTCTTCAATAATCCACTGTAATTTAAGCTATACTAATCTTGGCACTTTCTGATCCGTCTTTTTTCTATGCTTAAAATTAGTGGACTCCGTAAAAAATGATTGTCAAATAGGTAGTCAAGGTATTCTATCACCAGTTGAAAGCCGAACATTATTACAACATTTCCGATATCCTAAAAAGCCGTCTACATCATTTCTATCCACATCATTGGGTATGTATTCAAAACAAGAACAAAACTCACATATTACAGATGCTTCCATATTTGAGTTATCTCGACAAAGGCTAACTCTTTCTATGTTTAGTTCAAAAGCATCATTGAAAC]


>consensus_8910#2 CACGAGGTTTCCTTACAAACTTTCCTTGTAGTTATAAACATCCAATTTTATATGTCTAAA AATTTTGAAATGTAAATGGAGAATATTTTGCTAGTTTCTCGCAAATAACTCTTATCGATC ATCTGATTTGTTTATAAATAATAATTTAGATCTCTCAAAATATTACTTAGTTCTGGGGTT AACATTTTAAATACCTCGTCTAATCTTTCTAGTTCTCTTCAATAATCCACTGTAATTTAA GCTATACTAATCTTGGCACTTTCTGATCCGTCTTTTTTCTATGCTTAAAATTAGTGGACT CCGTAAAAAATGATTGTCAAATAGGTAGTCAAGGTATTCTATCACCAGTTGAAAGCCGAA CATTATTACAACATTTCCGATATCCTAAAAAGCCGTCTACATCATTTCTATCCACATCAT TGGGTATGTATTCAAAACAAGAACAAAACTCACATATTACAGATGCTTCCATATTTGAGT TATCTCGACAAAGGCTAACTCTTTCTATGTTTAGTTCAAAAGCATCATTGAAAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8910#0      AATATTATTATTGGTAGTAGTAGTAGTAACAATACTATCATCAGCTAAATCGAGTGGTGA 60
consensus_8910#1      ------------------------------------------------------------
consensus_8910#2      ------------------------------------------------------------
                                                                                  

consensus_8910#0      ATACACAATAAAACAAGTTAAATAACTTGGATGAAAAGAAAAATACTTGTCATTAGTAAA 120
consensus_8910#1      -------------------------------------AAACTGTACTTTCTGTGNATAAG 23
consensus_8910#2      ----------------------------------------CACGAGGTTTCCTTACAAAC 20
                                                                  *  *    *    ** 

consensus_8910#0      AACAATGATGAAGATTATAAGGATATTGAGAATATTATCACC-TAGGTATGAATGAGAAA 179
consensus_8910#1      CATGTTTGTGA--TTTGTTCTTTGATTCAGATCGTTTCAATGATGCTTNTGAACTAAACA 81
consensus_8910#2      TTTCCTTGTAGTTATAAACATCCAATTTTATATGTCTAAAAATT--TTGAAATGTAAATG 78
                           *  *     *         ***       *    *   *   *   *   * *  

consensus_8910#0      AAAAACAGCGGGACAAATGATAAACGACAAACTAGAT--AACAAAACAACAAGTACTAAA 237
consensus_8910#1      TAGAA-AGAGGTAGGCTTTGTCGA-GATAACTCAAAT--ATGGAAGCATC---TGTTATA 134
consensus_8910#2      GAGAATATTTTGCTAGTTTCTCGCAAATAACTCTTATCGATCATCTGATTTGTTTATAAA 138
                       * ** *          *  *     * **     **  *       *     *  ** *

consensus_8910#0      TGCTTAGTTAAAAATAGTGAGATAAAAATAAGCCATAATTATGGAGACGAAATCGAAGTA 297
consensus_8910#1      TG-TGAGTTTTGT-TCTTGTTTTGAATACATACC-CAATGATGTGGATAGAAATGATGTA 191
consensus_8910#2      TAATAATTTAGAT------CTCTCAAAATATTACTTAGTTCTGGGGTTAACATTTTAAAT 192
                      *  * * **             * ** * *   *  * *  **  *     *        

consensus_8910#0      AAGAAATACAGATCACTAAATAATAAAAATGGATATTTCGTCATGTTAACGCCGACCACT 357
consensus_8910#1      GA------CGGCTTTTTAGGATAT-----CGGAAATGTTGTAATAATGTT--CGGCTTTC 238
consensus_8910#2      ACCTCGTCTAATCTTTCTAGTTCT---CTTCAATAATCCACTGTAATTTA---AGCTAT- 245
                                             *        * *        *  *        *    

consensus_8910#0      GTGTGTTGGTAGAATTACTGGAGGTGGCGAAAAT--GTTTTTAAAATTGATTCACATTGC 415
consensus_8910#1      AACTGGTGATAGAATACCTTGAC-TACCTA--------TTTGACAATCATTTTTTACGGA 289
consensus_8910#2      -ACTAATCTTGGCACTTTCTGATCCGTCTTTTTTCTATGCTTAAAATTAGTGGACTCCGT 304
                         *  *  * * *      **     *            * * ***   *       * 

consensus_8910#0      ATGTTAAGCGTATAACTCAATGATTGATTAGGATTGCATGGAGTACAGTTGGTACAACTA 475
consensus_8910#1      GTCCAATGTTCGATAACTGGGATGCGCCCATGAACTAGCGCAATATGCTTCA-ATAACTT 348
consensus_8910#2      AAAAAATGATTGTCA---AATAGGTAGTCAAGGTATTCTATCAC-CAGTTGA-AAGCCGA 359
                           * *      *              * *                **   *   *  

consensus_8910#0      GTACTAGTTGTAACATTGGGGATAATCCTA----CTGTTTGAAGTGGTCACATTAGCTGC 531
consensus_8910#1      GTAGGATTT-TCGTATCATCCACTGTCCGAAGT-TCATTTTCATGGATTTTCCCAGCTGA 406
consensus_8910#2      ACATTA-TTACAACATTTCCGATATCCTAAAAAGCCGTCTACATCATTTCTATCCACATC 418
                        *  * **     **     *    *  *       * *  *    *        *   

consensus_8910#0      -TACATTCTGATTTAAGCAA--ACTGTACTTTCTTG-TGATAAGCATGTTTGTGATTTGT 587
consensus_8910#1      ACGTAATACATCTTCCGCAGTGATAGCACTTTTCTGACGATCACCACGTTTACGACGTAA 466
consensus_8910#2      ATTGGGTATGTATTCAA-AACAAGAACA-----------AAACTCACATATTACAGATGC 466
                            *     **    *   *    *           *    **  * *   *  *  

consensus_8910#0      TCTTTGATTCAGATCGTTTCAATGATGCTTTTGAACTAAATATAGAAAGAGGT---AGGC 644
consensus_8910#1      TTCCTTACTTGAATCGGTAACCTTAGGACTTTGAGCTCTCACGCGGTTGTGTT---GATT 523
consensus_8910#2      TTCCATATTTGAGTTATCTCGACAAAGGCT---AACTCTTTCTATGTTTAGTTCAAAAGC 523
                      *     * *    *          * *  *   * **             * *       

consensus_8910#0      TTTGTCGAGATAACTCAAATATGGAAGCATCTGTATATGTGAGTTTTGTTCT-TGTTTTG 703
consensus_8910#1      CTTGTGCAAAATAGAAAAATCTACCAACA---GACCAGGAATATTTTGATCAATAAGTAA 580
consensus_8910#2      ATCATTGAAAC------------------------------------------------- 534
                       *  *  * *                                                  

consensus_8910#0      CCTCGTGCCGATCATGGCCTCGA---GGCCA- 731
consensus_8910#1      TCCCAAGTTATTTAATACATTAACTGAGCCGA 612
consensus_8910#2      --------------------------------
                                                      




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)